data_6QDJ # _model_server_result.job_id sTUNGVN8SVSQiCQ6c0cPLA _model_server_result.datetime_utc '2024-10-19 16:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qdj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 6QDJ # _exptl.entry_id 6QDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.44 _cell.angle_gamma 90 _cell.entry_id 6QDJ _cell.length_a 54.11 _cell.length_b 111.96 _cell.length_c 84.74 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 188 n n C1 C2 GOL sing 189 n n C1 H11 GOL sing 190 n n C1 H12 GOL sing 191 n n O1 HO1 GOL sing 192 n n C2 O2 GOL sing 193 n n C2 C3 GOL sing 194 n n C2 H2 GOL sing 195 n n O2 HO2 GOL sing 196 n n C3 O3 GOL sing 197 n n C3 H31 GOL sing 198 n n C3 H32 GOL sing 199 n n O3 HO3 GOL sing 200 n n # _atom_sites.entry_id 6QDJ _atom_sites.fract_transf_matrix[1][1] 0.018481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 801 1 ADP ADP . C 3 GOL A 1 802 1 GOL GOL . D 3 GOL A 1 803 2 GOL GOL . E 3 GOL A 1 804 3 GOL GOL . F 3 GOL A 1 805 4 GOL GOL . G 3 GOL A 1 806 6 GOL GOL . H 3 GOL A 1 807 7 GOL GOL . I 3 GOL A 1 808 8 GOL GOL . J 3 GOL A 1 809 9 GOL GOL . K 3 GOL A 1 810 10 GOL GOL . L 3 GOL A 1 811 11 GOL GOL . M 4 BU1 A 1 812 1 BU1 BU1 . N 5 PGO A 1 813 2 PGO PGO . O 5 PGO A 1 814 3 PGO PGO . P 6 HEZ A 1 815 2 HEZ HEZ . Q 7 P15 A 1 816 2 P15 15P . R 8 HOH A 1 901 350 HOH HOH . R 8 HOH A 2 902 545 HOH HOH . R 8 HOH A 3 903 436 HOH HOH . R 8 HOH A 4 904 85 HOH HOH . R 8 HOH A 5 905 140 HOH HOH . R 8 HOH A 6 906 141 HOH HOH . R 8 HOH A 7 907 212 HOH HOH . R 8 HOH A 8 908 89 HOH HOH . R 8 HOH A 9 909 156 HOH HOH . R 8 HOH A 10 910 123 HOH HOH . R 8 HOH A 11 911 662 HOH HOH . R 8 HOH A 12 912 205 HOH HOH . R 8 HOH A 13 913 217 HOH HOH . R 8 HOH A 14 914 71 HOH HOH . R 8 HOH A 15 915 165 HOH HOH . R 8 HOH A 16 916 211 HOH HOH . R 8 HOH A 17 917 621 HOH HOH . R 8 HOH A 18 918 9 HOH HOH . R 8 HOH A 19 919 7 HOH HOH . R 8 HOH A 20 920 69 HOH HOH . R 8 HOH A 21 921 33 HOH HOH . R 8 HOH A 22 922 37 HOH HOH . R 8 HOH A 23 923 4 HOH HOH . R 8 HOH A 24 924 48 HOH HOH . R 8 HOH A 25 925 118 HOH HOH . R 8 HOH A 26 926 653 HOH HOH . R 8 HOH A 27 927 45 HOH HOH . R 8 HOH A 28 928 295 HOH HOH . R 8 HOH A 29 929 291 HOH HOH . R 8 HOH A 30 930 119 HOH HOH . R 8 HOH A 31 931 259 HOH HOH . R 8 HOH A 32 932 169 HOH HOH . R 8 HOH A 33 933 190 HOH HOH . R 8 HOH A 34 934 74 HOH HOH . R 8 HOH A 35 935 116 HOH HOH . R 8 HOH A 36 936 184 HOH HOH . R 8 HOH A 37 937 17 HOH HOH . R 8 HOH A 38 938 53 HOH HOH . R 8 HOH A 39 939 30 HOH HOH . R 8 HOH A 40 940 83 HOH HOH . R 8 HOH A 41 941 6 HOH HOH . R 8 HOH A 42 942 198 HOH HOH . R 8 HOH A 43 943 109 HOH HOH . R 8 HOH A 44 944 59 HOH HOH . R 8 HOH A 45 945 10 HOH HOH . R 8 HOH A 46 946 40 HOH HOH . R 8 HOH A 47 947 203 HOH HOH . R 8 HOH A 48 948 111 HOH HOH . R 8 HOH A 49 949 75 HOH HOH . R 8 HOH A 50 950 201 HOH HOH . R 8 HOH A 51 951 302 HOH HOH . R 8 HOH A 52 952 3 HOH HOH . R 8 HOH A 53 953 317 HOH HOH . R 8 HOH A 54 954 159 HOH HOH . R 8 HOH A 55 955 164 HOH HOH . R 8 HOH A 56 956 110 HOH HOH . R 8 HOH A 57 957 35 HOH HOH . R 8 HOH A 58 958 147 HOH HOH . R 8 HOH A 59 959 322 HOH HOH . R 8 HOH A 60 960 12 HOH HOH . R 8 HOH A 61 961 58 HOH HOH . R 8 HOH A 62 962 238 HOH HOH . R 8 HOH A 63 963 234 HOH HOH . R 8 HOH A 64 964 94 HOH HOH . R 8 HOH A 65 965 114 HOH HOH . R 8 HOH A 66 966 41 HOH HOH . R 8 HOH A 67 967 5 HOH HOH . R 8 HOH A 68 968 363 HOH HOH . R 8 HOH A 69 969 78 HOH HOH . R 8 HOH A 70 970 101 HOH HOH . R 8 HOH A 71 971 102 HOH HOH . R 8 HOH A 72 972 656 HOH HOH . R 8 HOH A 73 973 2 HOH HOH . R 8 HOH A 74 974 241 HOH HOH . R 8 HOH A 75 975 8 HOH HOH . R 8 HOH A 76 976 193 HOH HOH . R 8 HOH A 77 977 174 HOH HOH . R 8 HOH A 78 978 215 HOH HOH . R 8 HOH A 79 979 28 HOH HOH . R 8 HOH A 80 980 129 HOH HOH . R 8 HOH A 81 981 117 HOH HOH . R 8 HOH A 82 982 24 HOH HOH . R 8 HOH A 83 983 60 HOH HOH . R 8 HOH A 84 984 371 HOH HOH . R 8 HOH A 85 985 1 HOH HOH . R 8 HOH A 86 986 126 HOH HOH . R 8 HOH A 87 987 230 HOH HOH . R 8 HOH A 88 988 333 HOH HOH . R 8 HOH A 89 989 209 HOH HOH . R 8 HOH A 90 990 208 HOH HOH . R 8 HOH A 91 991 23 HOH HOH . R 8 HOH A 92 992 288 HOH HOH . R 8 HOH A 93 993 142 HOH HOH . R 8 HOH A 94 994 42 HOH HOH . R 8 HOH A 95 995 231 HOH HOH . R 8 HOH A 96 996 66 HOH HOH . R 8 HOH A 97 997 276 HOH HOH . R 8 HOH A 98 998 200 HOH HOH . R 8 HOH A 99 999 63 HOH HOH . R 8 HOH A 100 1000 351 HOH HOH . R 8 HOH A 101 1001 13 HOH HOH . R 8 HOH A 102 1002 70 HOH HOH . R 8 HOH A 103 1003 25 HOH HOH . R 8 HOH A 104 1004 72 HOH HOH . R 8 HOH A 105 1005 182 HOH HOH . R 8 HOH A 106 1006 336 HOH HOH . R 8 HOH A 107 1007 326 HOH HOH . R 8 HOH A 108 1008 36 HOH HOH . R 8 HOH A 109 1009 14 HOH HOH . R 8 HOH A 110 1010 659 HOH HOH . R 8 HOH A 111 1011 50 HOH HOH . R 8 HOH A 112 1012 107 HOH HOH . R 8 HOH A 113 1013 144 HOH HOH . R 8 HOH A 114 1014 173 HOH HOH . R 8 HOH A 115 1015 84 HOH HOH . R 8 HOH A 116 1016 20 HOH HOH . R 8 HOH A 117 1017 282 HOH HOH . R 8 HOH A 118 1018 57 HOH HOH . R 8 HOH A 119 1019 612 HOH HOH . R 8 HOH A 120 1020 112 HOH HOH . R 8 HOH A 121 1021 26 HOH HOH . R 8 HOH A 122 1022 245 HOH HOH . R 8 HOH A 123 1023 223 HOH HOH . R 8 HOH A 124 1024 280 HOH HOH . R 8 HOH A 125 1025 206 HOH HOH . R 8 HOH A 126 1026 39 HOH HOH . R 8 HOH A 127 1027 46 HOH HOH . R 8 HOH A 128 1028 154 HOH HOH . R 8 HOH A 129 1029 146 HOH HOH . R 8 HOH A 130 1030 91 HOH HOH . R 8 HOH A 131 1031 220 HOH HOH . R 8 HOH A 132 1032 47 HOH HOH . R 8 HOH A 133 1033 68 HOH HOH . R 8 HOH A 134 1034 166 HOH HOH . R 8 HOH A 135 1035 21 HOH HOH . R 8 HOH A 136 1036 152 HOH HOH . R 8 HOH A 137 1037 661 HOH HOH . R 8 HOH A 138 1038 99 HOH HOH . R 8 HOH A 139 1039 56 HOH HOH . R 8 HOH A 140 1040 290 HOH HOH . R 8 HOH A 141 1041 64 HOH HOH . R 8 HOH A 142 1042 216 HOH HOH . R 8 HOH A 143 1043 365 HOH HOH . R 8 HOH A 144 1044 54 HOH HOH . R 8 HOH A 145 1045 100 HOH HOH . R 8 HOH A 146 1046 179 HOH HOH . R 8 HOH A 147 1047 31 HOH HOH . R 8 HOH A 148 1048 652 HOH HOH . R 8 HOH A 149 1049 88 HOH HOH . R 8 HOH A 150 1050 19 HOH HOH . R 8 HOH A 151 1051 487 HOH HOH . R 8 HOH A 152 1052 133 HOH HOH . R 8 HOH A 153 1053 29 HOH HOH . R 8 HOH A 154 1054 232 HOH HOH . R 8 HOH A 155 1055 153 HOH HOH . R 8 HOH A 156 1056 228 HOH HOH . R 8 HOH A 157 1057 18 HOH HOH . R 8 HOH A 158 1058 97 HOH HOH . R 8 HOH A 159 1059 44 HOH HOH . R 8 HOH A 160 1060 445 HOH HOH . R 8 HOH A 161 1061 244 HOH HOH . R 8 HOH A 162 1062 180 HOH HOH . R 8 HOH A 163 1063 605 HOH HOH . R 8 HOH A 164 1064 157 HOH HOH . R 8 HOH A 165 1065 624 HOH HOH . R 8 HOH A 166 1066 253 HOH HOH . R 8 HOH A 167 1067 270 HOH HOH . R 8 HOH A 168 1068 113 HOH HOH . R 8 HOH A 169 1069 82 HOH HOH . R 8 HOH A 170 1070 373 HOH HOH . R 8 HOH A 171 1071 475 HOH HOH . R 8 HOH A 172 1072 447 HOH HOH . R 8 HOH A 173 1073 634 HOH HOH . R 8 HOH A 174 1074 127 HOH HOH . R 8 HOH A 175 1075 52 HOH HOH . R 8 HOH A 176 1076 278 HOH HOH . R 8 HOH A 177 1077 16 HOH HOH . R 8 HOH A 178 1078 32 HOH HOH . R 8 HOH A 179 1079 311 HOH HOH . R 8 HOH A 180 1080 148 HOH HOH . R 8 HOH A 181 1081 187 HOH HOH . R 8 HOH A 182 1082 171 HOH HOH . R 8 HOH A 183 1083 183 HOH HOH . R 8 HOH A 184 1084 105 HOH HOH . R 8 HOH A 185 1085 250 HOH HOH . R 8 HOH A 186 1086 579 HOH HOH . R 8 HOH A 187 1087 602 HOH HOH . R 8 HOH A 188 1088 210 HOH HOH . R 8 HOH A 189 1089 321 HOH HOH . R 8 HOH A 190 1090 15 HOH HOH . R 8 HOH A 191 1091 233 HOH HOH . R 8 HOH A 192 1092 285 HOH HOH . R 8 HOH A 193 1093 218 HOH HOH . R 8 HOH A 194 1094 38 HOH HOH . R 8 HOH A 195 1095 416 HOH HOH . R 8 HOH A 196 1096 73 HOH HOH . R 8 HOH A 197 1097 243 HOH HOH . R 8 HOH A 198 1098 186 HOH HOH . R 8 HOH A 199 1099 136 HOH HOH . R 8 HOH A 200 1100 163 HOH HOH . R 8 HOH A 201 1101 655 HOH HOH . R 8 HOH A 202 1102 248 HOH HOH . R 8 HOH A 203 1103 654 HOH HOH . R 8 HOH A 204 1104 145 HOH HOH . R 8 HOH A 205 1105 202 HOH HOH . R 8 HOH A 206 1106 378 HOH HOH . R 8 HOH A 207 1107 27 HOH HOH . R 8 HOH A 208 1108 175 HOH HOH . R 8 HOH A 209 1109 162 HOH HOH . R 8 HOH A 210 1110 534 HOH HOH . R 8 HOH A 211 1111 627 HOH HOH . R 8 HOH A 212 1112 274 HOH HOH . R 8 HOH A 213 1113 514 HOH HOH . R 8 HOH A 214 1114 539 HOH HOH . R 8 HOH A 215 1115 268 HOH HOH . R 8 HOH A 216 1116 622 HOH HOH . R 8 HOH A 217 1117 331 HOH HOH . R 8 HOH A 218 1118 263 HOH HOH . R 8 HOH A 219 1119 176 HOH HOH . R 8 HOH A 220 1120 452 HOH HOH . R 8 HOH A 221 1121 660 HOH HOH . R 8 HOH A 222 1122 246 HOH HOH . R 8 HOH A 223 1123 239 HOH HOH . R 8 HOH A 224 1124 599 HOH HOH . R 8 HOH A 225 1125 366 HOH HOH . R 8 HOH A 226 1126 374 HOH HOH . R 8 HOH A 227 1127 553 HOH HOH . R 8 HOH A 228 1128 192 HOH HOH . R 8 HOH A 229 1129 303 HOH HOH . R 8 HOH A 230 1130 492 HOH HOH . R 8 HOH A 231 1131 240 HOH HOH . R 8 HOH A 232 1132 155 HOH HOH . R 8 HOH A 233 1133 224 HOH HOH . R 8 HOH A 234 1134 356 HOH HOH . R 8 HOH A 235 1135 457 HOH HOH . R 8 HOH A 236 1136 149 HOH HOH . R 8 HOH A 237 1137 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 5.822 11.779 125.948 1 44.94 ? C1 GOL 802 A 1 HETATM 2 O O1 GOL . . . C 3 6.962 12.691 125.865 1 47.38 ? O1 GOL 802 A 1 HETATM 3 C C2 GOL . . . C 3 5.416 11.748 127.483 1 51.21 ? C2 GOL 802 A 1 HETATM 4 O O2 GOL . . . C 3 4.054 11.799 127.678 1 34.07 ? O2 GOL 802 A 1 HETATM 5 C C3 GOL . . . C 3 6.155 10.521 128.141 1 42.44 ? C3 GOL 802 A 1 HETATM 6 O O3 GOL . . . C 3 5.564 10.202 129.423 1 33.26 ? O3 GOL 802 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #