data_6QE9
#
_model_server_result.job_id            j2WDMUoT7XatKe_t7-EylA 
_model_server_result.datetime_utc      '2024-10-19 17:20:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qe9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6QE9 
#
_exptl.entry_id    6QE9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              459.423 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'pentacoordinate Pt(II) compound' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.97 
_cell.angle_gamma         90 
_cell.entry_id            6QE9 
_cell.length_a            99.005 
_cell.length_b            30.655 
_cell.length_c            68.68 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QE9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc1 A NE2 HIS 105 A HIS 105 1_555 D PT J9H . A J9H 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc2 B NE2 HIS 105 B HIS 105 1_555 E PT J9H . B J9H 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
#
_chem_comp.formula           'C17 H18 N3 Pt 1' 
_chem_comp.formula_weight    459.423 
_chem_comp.id                J9H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'pentacoordinate Pt(II) compound' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 C3 J9H sing 173 n n 
C4 C4A J9H sing 174 n n 
C3 C2 J9H doub 175 n n 
C5 C4A J9H doub 176 n y 
C5 C6 J9H sing 177 n y 
C4A C1A J9H sing 178 n y 
C2 C2A J9H sing 179 n n 
C2 N1 J9H sing 180 n n 
C6 C6A J9H doub 181 n y 
C1A N1 J9H sing 182 n n 
C1A C10 J9H doub 183 n y 
C22 C21 J9H doub 184 n n 
N1 PT J9H sing 185 n n 
C6A C10 J9H sing 186 n y 
C6A C7 J9H sing 187 n y 
C10 N10 J9H sing 188 n y 
PT N10 J9H sing 189 n n 
C7 C8 J9H doub 190 n y 
N10 C9 J9H doub 191 n y 
C8 C9 J9H sing 192 n y 
C9 C9A J9H sing 193 n n 
PT C22 J9H sing 194 n n 
C9A H1 J9H sing 195 n n 
C9A H2 J9H sing 196 n n 
C9A H3 J9H sing 197 n n 
C8 H4 J9H sing 198 n n 
C7 H5 J9H sing 199 n n 
C5 H6 J9H sing 200 n n 
C6 H7 J9H sing 201 n n 
C2A H8 J9H sing 202 n n 
C2A H9 J9H sing 203 n n 
C2A H10 J9H sing 204 n n 
C3 H11 J9H sing 205 n n 
C4 H12 J9H sing 206 n n 
C4 H13 J9H sing 207 n n 
CP H14 J9H sing 208 n n 
CP H15 J9H sing 209 n n 
CP H16 J9H sing 210 n n 
C21 PT J9H sing 211 n n 
CP PT J9H sing 212 n n 
PT N2 J9H sing 213 n n 
N2 H17 J9H sing 214 n n 
N2 H18 J9H sing 215 n n 
#
_atom_sites.entry_id                     6QE9 
_atom_sites.fract_transf_matrix[1][1]    0.0101 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000524 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032621 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01458 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 201 1 SO4 SO4 . 
D 3 J9H A 1 202 202 J9H WWW . 
E 3 J9H B 1 201 202 J9H WWW . 
F 4 HOH A 1 301 126 HOH HOH . 
F 4 HOH A 2 302 136 HOH HOH . 
F 4 HOH A 3 303 133 HOH HOH . 
F 4 HOH A 4 304 118 HOH HOH . 
F 4 HOH A 5 305 29 HOH HOH . 
F 4 HOH A 6 306 32 HOH HOH . 
F 4 HOH A 7 307 40 HOH HOH . 
F 4 HOH A 8 308 104 HOH HOH . 
F 4 HOH A 9 309 120 HOH HOH . 
F 4 HOH A 10 310 93 HOH HOH . 
F 4 HOH A 11 311 125 HOH HOH . 
F 4 HOH A 12 312 127 HOH HOH . 
F 4 HOH A 13 313 14 HOH HOH . 
F 4 HOH A 14 314 132 HOH HOH . 
F 4 HOH A 15 315 119 HOH HOH . 
F 4 HOH A 16 316 3 HOH HOH . 
F 4 HOH A 17 317 70 HOH HOH . 
F 4 HOH A 18 318 108 HOH HOH . 
F 4 HOH A 19 319 110 HOH HOH . 
F 4 HOH A 20 320 1 HOH HOH . 
F 4 HOH A 21 321 21 HOH HOH . 
F 4 HOH A 22 322 76 HOH HOH . 
F 4 HOH A 23 323 37 HOH HOH . 
F 4 HOH A 24 324 79 HOH HOH . 
F 4 HOH A 25 325 47 HOH HOH . 
F 4 HOH A 26 326 46 HOH HOH . 
F 4 HOH A 27 327 124 HOH HOH . 
F 4 HOH A 28 328 87 HOH HOH . 
F 4 HOH A 29 329 112 HOH HOH . 
F 4 HOH A 30 330 57 HOH HOH . 
F 4 HOH A 31 331 15 HOH HOH . 
F 4 HOH A 32 332 98 HOH HOH . 
F 4 HOH A 33 333 50 HOH HOH . 
F 4 HOH A 34 334 49 HOH HOH . 
F 4 HOH A 35 335 26 HOH HOH . 
F 4 HOH A 36 336 131 HOH HOH . 
F 4 HOH A 37 337 114 HOH HOH . 
F 4 HOH A 38 338 122 HOH HOH . 
F 4 HOH A 39 339 38 HOH HOH . 
F 4 HOH A 40 340 18 HOH HOH . 
F 4 HOH A 41 341 86 HOH HOH . 
F 4 HOH A 42 342 95 HOH HOH . 
F 4 HOH A 43 343 121 HOH HOH . 
F 4 HOH A 44 344 107 HOH HOH . 
F 4 HOH A 45 345 11 HOH HOH . 
F 4 HOH A 46 346 19 HOH HOH . 
F 4 HOH A 47 347 117 HOH HOH . 
F 4 HOH A 48 348 111 HOH HOH . 
F 4 HOH A 49 349 39 HOH HOH . 
F 4 HOH A 50 350 2 HOH HOH . 
F 4 HOH A 51 351 72 HOH HOH . 
F 4 HOH A 52 352 116 HOH HOH . 
F 4 HOH A 53 353 75 HOH HOH . 
F 4 HOH A 54 354 73 HOH HOH . 
F 4 HOH A 55 355 65 HOH HOH . 
F 4 HOH A 56 356 74 HOH HOH . 
F 4 HOH A 57 357 78 HOH HOH . 
F 4 HOH A 58 358 148 HOH HOH . 
F 4 HOH A 59 359 115 HOH HOH . 
F 4 HOH A 60 360 83 HOH HOH . 
F 4 HOH A 61 361 145 HOH HOH . 
F 4 HOH A 62 362 146 HOH HOH . 
F 4 HOH A 63 363 89 HOH HOH . 
F 4 HOH A 64 364 152 HOH HOH . 
F 4 HOH A 65 365 94 HOH HOH . 
F 4 HOH A 66 366 66 HOH HOH . 
F 4 HOH A 67 367 84 HOH HOH . 
F 4 HOH A 68 368 113 HOH HOH . 
F 4 HOH A 69 369 35 HOH HOH . 
F 4 HOH A 70 370 97 HOH HOH . 
F 4 HOH A 71 371 137 HOH HOH . 
G 4 HOH B 1 301 123 HOH HOH . 
G 4 HOH B 2 302 149 HOH HOH . 
G 4 HOH B 3 303 99 HOH HOH . 
G 4 HOH B 4 304 147 HOH HOH . 
G 4 HOH B 5 305 54 HOH HOH . 
G 4 HOH B 6 306 24 HOH HOH . 
G 4 HOH B 7 307 22 HOH HOH . 
G 4 HOH B 8 308 150 HOH HOH . 
G 4 HOH B 9 309 68 HOH HOH . 
G 4 HOH B 10 310 12 HOH HOH . 
G 4 HOH B 11 311 9 HOH HOH . 
G 4 HOH B 12 312 102 HOH HOH . 
G 4 HOH B 13 313 41 HOH HOH . 
G 4 HOH B 14 314 90 HOH HOH . 
G 4 HOH B 15 315 10 HOH HOH . 
G 4 HOH B 16 316 67 HOH HOH . 
G 4 HOH B 17 317 140 HOH HOH . 
G 4 HOH B 18 318 16 HOH HOH . 
G 4 HOH B 19 319 53 HOH HOH . 
G 4 HOH B 20 320 77 HOH HOH . 
G 4 HOH B 21 321 27 HOH HOH . 
G 4 HOH B 22 322 64 HOH HOH . 
G 4 HOH B 23 323 71 HOH HOH . 
G 4 HOH B 24 324 25 HOH HOH . 
G 4 HOH B 25 325 13 HOH HOH . 
G 4 HOH B 26 326 52 HOH HOH . 
G 4 HOH B 27 327 63 HOH HOH . 
G 4 HOH B 28 328 34 HOH HOH . 
G 4 HOH B 29 329 31 HOH HOH . 
G 4 HOH B 30 330 36 HOH HOH . 
G 4 HOH B 31 331 100 HOH HOH . 
G 4 HOH B 32 332 130 HOH HOH . 
G 4 HOH B 33 333 128 HOH HOH . 
G 4 HOH B 34 334 28 HOH HOH . 
G 4 HOH B 35 335 92 HOH HOH . 
G 4 HOH B 36 336 23 HOH HOH . 
G 4 HOH B 37 337 42 HOH HOH . 
G 4 HOH B 38 338 45 HOH HOH . 
G 4 HOH B 39 339 8 HOH HOH . 
G 4 HOH B 40 340 62 HOH HOH . 
G 4 HOH B 41 341 58 HOH HOH . 
G 4 HOH B 42 342 60 HOH HOH . 
G 4 HOH B 43 343 138 HOH HOH . 
G 4 HOH B 44 344 129 HOH HOH . 
G 4 HOH B 45 345 51 HOH HOH . 
G 4 HOH B 46 346 109 HOH HOH . 
G 4 HOH B 47 347 135 HOH HOH . 
G 4 HOH B 48 348 153 HOH HOH . 
G 4 HOH B 49 349 91 HOH HOH . 
G 4 HOH B 50 350 61 HOH HOH . 
G 4 HOH B 51 351 88 HOH HOH . 
G 4 HOH B 52 352 48 HOH HOH . 
G 4 HOH B 53 353 103 HOH HOH . 
G 4 HOH B 54 354 141 HOH HOH . 
G 4 HOH B 55 355 17 HOH HOH . 
G 4 HOH B 56 356 105 HOH HOH . 
G 4 HOH B 57 357 101 HOH HOH . 
G 4 HOH B 58 358 33 HOH HOH . 
G 4 HOH B 59 359 106 HOH HOH . 
G 4 HOH B 60 360 69 HOH HOH . 
G 4 HOH B 61 361 80 HOH HOH . 
G 4 HOH B 62 362 139 HOH HOH . 
G 4 HOH B 63 363 20 HOH HOH . 
G 4 HOH B 64 364 59 HOH HOH . 
G 4 HOH B 65 365 134 HOH HOH . 
G 4 HOH B 66 366 151 HOH HOH . 
G 4 HOH B 67 367 44 HOH HOH . 
G 4 HOH B 68 368 143 HOH HOH . 
G 4 HOH B 69 369 81 HOH HOH . 
G 4 HOH B 70 370 142 HOH HOH . 
G 4 HOH B 71 371 96 HOH HOH . 
G 4 HOH B 72 372 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 PT PT J9H . . . D 3 24.015 -14.97 87.124 0.6 40 ? PT J9H 202 A 1 
HETATM 2 C CP J9H . . . D 3 26.349 -14.266 87.751 0.6 19.48 ? CP J9H 202 A 1 
HETATM 3 C C21 J9H . . . D 3 21.068 -15.37 86.233 0.6 20.02 ? C21 J9H 202 A 1 
HETATM 4 C C22 J9H . . . D 3 21.374 -16.614 86.993 0.6 18.91 ? C22 J9H 202 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#