data_6QED # _model_server_result.job_id 5V0XT9WA0pItQExAmdOBwg _model_server_result.datetime_utc '2024-11-27 05:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qed # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6QED # _exptl.entry_id 6QED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QED _cell.length_a 89.3 _cell.length_b 99.67 _cell.length_c 101.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QED _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 145 A ASP 251 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A OD2 ASP 145 A ASP 251 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A OD2 ASP 156 A ASP 262 1_555 H MN MN . A MN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 A OD1 ASP 156 A ASP 262 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 A NE2 HIS 225 A HIS 331 1_555 H MN MN . A MN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc6 A OE2 GLU 258 A GLU 364 1_555 H MN MN . A MN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc7 A OE2 GLU 353 A GLU 459 1_555 H MN MN . A MN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc8 A OE1 GLU 353 A GLU 459 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc9 G O14 HZK . A HZK 506 1_555 H MN MN . A MN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc10 G O14 HZK . A HZK 506 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc11 G O18 HZK . A HZK 506 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 147 n n C1 C2 GOL sing 148 n n C1 H11 GOL sing 149 n n C1 H12 GOL sing 150 n n O1 HO1 GOL sing 151 n n C2 O2 GOL sing 152 n n C2 C3 GOL sing 153 n n C2 H2 GOL sing 154 n n O2 HO2 GOL sing 155 n n C3 O3 GOL sing 156 n n C3 H31 GOL sing 157 n n C3 H32 GOL sing 158 n n O3 HO3 GOL sing 159 n n # _atom_sites.entry_id 6QED _atom_sites.fract_transf_matrix[1][1] 0.011198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 2 EDO A 1 502 2 EDO EDO . D 2 EDO A 1 503 3 EDO EDO . E 3 DMS A 1 504 1 DMS DMS . F 4 GOL A 1 505 1 GOL GOL . G 5 HZK A 1 506 1 HZK INH . H 6 MN A 1 507 501 MN MN2 . I 6 MN A 1 508 502 MN MN2 . J 7 HOH A 1 601 121 HOH HOH . J 7 HOH A 2 602 173 HOH HOH . J 7 HOH A 3 603 204 HOH HOH . J 7 HOH A 4 604 1 HOH HOH . J 7 HOH A 5 605 163 HOH HOH . J 7 HOH A 6 606 2 HOH HOH . J 7 HOH A 7 607 6 HOH HOH . J 7 HOH A 8 608 147 HOH HOH . J 7 HOH A 9 609 179 HOH HOH . J 7 HOH A 10 610 20 HOH HOH . J 7 HOH A 11 611 94 HOH HOH . J 7 HOH A 12 612 123 HOH HOH . J 7 HOH A 13 613 101 HOH HOH . J 7 HOH A 14 614 49 HOH HOH . J 7 HOH A 15 615 24 HOH HOH . J 7 HOH A 16 616 10 HOH HOH . J 7 HOH A 17 617 3 HOH HOH . J 7 HOH A 18 618 158 HOH HOH . J 7 HOH A 19 619 60 HOH HOH . J 7 HOH A 20 620 103 HOH HOH . J 7 HOH A 21 621 84 HOH HOH . J 7 HOH A 22 622 122 HOH HOH . J 7 HOH A 23 623 198 HOH HOH . J 7 HOH A 24 624 30 HOH HOH . J 7 HOH A 25 625 161 HOH HOH . J 7 HOH A 26 626 61 HOH HOH . J 7 HOH A 27 627 27 HOH HOH . J 7 HOH A 28 628 77 HOH HOH . J 7 HOH A 29 629 89 HOH HOH . J 7 HOH A 30 630 17 HOH HOH . J 7 HOH A 31 631 72 HOH HOH . J 7 HOH A 32 632 35 HOH HOH . J 7 HOH A 33 633 9 HOH HOH . J 7 HOH A 34 634 212 HOH HOH . J 7 HOH A 35 635 156 HOH HOH . J 7 HOH A 36 636 82 HOH HOH . J 7 HOH A 37 637 171 HOH HOH . J 7 HOH A 38 638 218 HOH HOH . J 7 HOH A 39 639 65 HOH HOH . J 7 HOH A 40 640 66 HOH HOH . J 7 HOH A 41 641 8 HOH HOH . J 7 HOH A 42 642 109 HOH HOH . J 7 HOH A 43 643 79 HOH HOH . J 7 HOH A 44 644 105 HOH HOH . J 7 HOH A 45 645 93 HOH HOH . J 7 HOH A 46 646 102 HOH HOH . J 7 HOH A 47 647 170 HOH HOH . J 7 HOH A 48 648 149 HOH HOH . J 7 HOH A 49 649 148 HOH HOH . J 7 HOH A 50 650 74 HOH HOH . J 7 HOH A 51 651 128 HOH HOH . J 7 HOH A 52 652 28 HOH HOH . J 7 HOH A 53 653 16 HOH HOH . J 7 HOH A 54 654 166 HOH HOH . J 7 HOH A 55 655 50 HOH HOH . J 7 HOH A 56 656 32 HOH HOH . J 7 HOH A 57 657 4 HOH HOH . J 7 HOH A 58 658 177 HOH HOH . J 7 HOH A 59 659 47 HOH HOH . J 7 HOH A 60 660 73 HOH HOH . J 7 HOH A 61 661 69 HOH HOH . J 7 HOH A 62 662 51 HOH HOH . J 7 HOH A 63 663 22 HOH HOH . J 7 HOH A 64 664 117 HOH HOH . J 7 HOH A 65 665 38 HOH HOH . J 7 HOH A 66 666 116 HOH HOH . J 7 HOH A 67 667 70 HOH HOH . J 7 HOH A 68 668 222 HOH HOH . J 7 HOH A 69 669 36 HOH HOH . J 7 HOH A 70 670 63 HOH HOH . J 7 HOH A 71 671 75 HOH HOH . J 7 HOH A 72 672 98 HOH HOH . J 7 HOH A 73 673 13 HOH HOH . J 7 HOH A 74 674 52 HOH HOH . J 7 HOH A 75 675 111 HOH HOH . J 7 HOH A 76 676 164 HOH HOH . J 7 HOH A 77 677 78 HOH HOH . J 7 HOH A 78 678 91 HOH HOH . J 7 HOH A 79 679 55 HOH HOH . J 7 HOH A 80 680 95 HOH HOH . J 7 HOH A 81 681 44 HOH HOH . J 7 HOH A 82 682 115 HOH HOH . J 7 HOH A 83 683 145 HOH HOH . J 7 HOH A 84 684 25 HOH HOH . J 7 HOH A 85 685 23 HOH HOH . J 7 HOH A 86 686 159 HOH HOH . J 7 HOH A 87 687 76 HOH HOH . J 7 HOH A 88 688 224 HOH HOH . J 7 HOH A 89 689 127 HOH HOH . J 7 HOH A 90 690 155 HOH HOH . J 7 HOH A 91 691 53 HOH HOH . J 7 HOH A 92 692 110 HOH HOH . J 7 HOH A 93 693 39 HOH HOH . J 7 HOH A 94 694 86 HOH HOH . J 7 HOH A 95 695 42 HOH HOH . J 7 HOH A 96 696 106 HOH HOH . J 7 HOH A 97 697 54 HOH HOH . J 7 HOH A 98 698 223 HOH HOH . J 7 HOH A 99 699 157 HOH HOH . J 7 HOH A 100 700 14 HOH HOH . J 7 HOH A 101 701 178 HOH HOH . J 7 HOH A 102 702 46 HOH HOH . J 7 HOH A 103 703 29 HOH HOH . J 7 HOH A 104 704 5 HOH HOH . J 7 HOH A 105 705 217 HOH HOH . J 7 HOH A 106 706 64 HOH HOH . J 7 HOH A 107 707 87 HOH HOH . J 7 HOH A 108 708 219 HOH HOH . J 7 HOH A 109 709 21 HOH HOH . J 7 HOH A 110 710 11 HOH HOH . J 7 HOH A 111 711 7 HOH HOH . J 7 HOH A 112 712 118 HOH HOH . J 7 HOH A 113 713 31 HOH HOH . J 7 HOH A 114 714 162 HOH HOH . J 7 HOH A 115 715 182 HOH HOH . J 7 HOH A 116 716 107 HOH HOH . J 7 HOH A 117 717 19 HOH HOH . J 7 HOH A 118 718 126 HOH HOH . J 7 HOH A 119 719 194 HOH HOH . J 7 HOH A 120 720 37 HOH HOH . J 7 HOH A 121 721 134 HOH HOH . J 7 HOH A 122 722 45 HOH HOH . J 7 HOH A 123 723 40 HOH HOH . J 7 HOH A 124 724 67 HOH HOH . J 7 HOH A 125 725 97 HOH HOH . J 7 HOH A 126 726 181 HOH HOH . J 7 HOH A 127 727 15 HOH HOH . J 7 HOH A 128 728 172 HOH HOH . J 7 HOH A 129 729 68 HOH HOH . J 7 HOH A 130 730 202 HOH HOH . J 7 HOH A 131 731 153 HOH HOH . J 7 HOH A 132 732 146 HOH HOH . J 7 HOH A 133 733 114 HOH HOH . J 7 HOH A 134 734 132 HOH HOH . J 7 HOH A 135 735 96 HOH HOH . J 7 HOH A 136 736 85 HOH HOH . J 7 HOH A 137 737 137 HOH HOH . J 7 HOH A 138 738 175 HOH HOH . J 7 HOH A 139 739 183 HOH HOH . J 7 HOH A 140 740 197 HOH HOH . J 7 HOH A 141 741 56 HOH HOH . J 7 HOH A 142 742 41 HOH HOH . J 7 HOH A 143 743 203 HOH HOH . J 7 HOH A 144 744 131 HOH HOH . J 7 HOH A 145 745 34 HOH HOH . J 7 HOH A 146 746 12 HOH HOH . J 7 HOH A 147 747 191 HOH HOH . J 7 HOH A 148 748 168 HOH HOH . J 7 HOH A 149 749 152 HOH HOH . J 7 HOH A 150 750 176 HOH HOH . J 7 HOH A 151 751 48 HOH HOH . J 7 HOH A 152 752 43 HOH HOH . J 7 HOH A 153 753 180 HOH HOH . J 7 HOH A 154 754 160 HOH HOH . J 7 HOH A 155 755 112 HOH HOH . J 7 HOH A 156 756 26 HOH HOH . J 7 HOH A 157 757 140 HOH HOH . J 7 HOH A 158 758 100 HOH HOH . J 7 HOH A 159 759 33 HOH HOH . J 7 HOH A 160 760 108 HOH HOH . J 7 HOH A 161 761 124 HOH HOH . J 7 HOH A 162 762 214 HOH HOH . J 7 HOH A 163 763 142 HOH HOH . J 7 HOH A 164 764 165 HOH HOH . J 7 HOH A 165 765 18 HOH HOH . J 7 HOH A 166 766 151 HOH HOH . J 7 HOH A 167 767 201 HOH HOH . J 7 HOH A 168 768 92 HOH HOH . J 7 HOH A 169 769 130 HOH HOH . J 7 HOH A 170 770 71 HOH HOH . J 7 HOH A 171 771 154 HOH HOH . J 7 HOH A 172 772 120 HOH HOH . J 7 HOH A 173 773 62 HOH HOH . J 7 HOH A 174 774 205 HOH HOH . J 7 HOH A 175 775 206 HOH HOH . J 7 HOH A 176 776 135 HOH HOH . J 7 HOH A 177 777 213 HOH HOH . J 7 HOH A 178 778 81 HOH HOH . J 7 HOH A 179 779 144 HOH HOH . J 7 HOH A 180 780 90 HOH HOH . J 7 HOH A 181 781 83 HOH HOH . J 7 HOH A 182 782 139 HOH HOH . J 7 HOH A 183 783 113 HOH HOH . J 7 HOH A 184 784 99 HOH HOH . J 7 HOH A 185 785 88 HOH HOH . J 7 HOH A 186 786 200 HOH HOH . J 7 HOH A 187 787 57 HOH HOH . J 7 HOH A 188 788 125 HOH HOH . J 7 HOH A 189 789 174 HOH HOH . J 7 HOH A 190 790 129 HOH HOH . J 7 HOH A 191 791 58 HOH HOH . J 7 HOH A 192 792 104 HOH HOH . J 7 HOH A 193 793 136 HOH HOH . J 7 HOH A 194 794 133 HOH HOH . J 7 HOH A 195 795 216 HOH HOH . J 7 HOH A 196 796 220 HOH HOH . J 7 HOH A 197 797 80 HOH HOH . J 7 HOH A 198 798 59 HOH HOH . J 7 HOH A 199 799 186 HOH HOH . J 7 HOH A 200 800 187 HOH HOH . J 7 HOH A 201 801 141 HOH HOH . J 7 HOH A 202 802 150 HOH HOH . J 7 HOH A 203 803 119 HOH HOH . J 7 HOH A 204 804 199 HOH HOH . J 7 HOH A 205 805 143 HOH HOH . J 7 HOH A 206 806 167 HOH HOH . J 7 HOH A 207 807 185 HOH HOH . J 7 HOH A 208 808 210 HOH HOH . J 7 HOH A 209 809 190 HOH HOH . J 7 HOH A 210 810 192 HOH HOH . J 7 HOH A 211 811 207 HOH HOH . J 7 HOH A 212 812 169 HOH HOH . J 7 HOH A 213 813 209 HOH HOH . J 7 HOH A 214 814 138 HOH HOH . J 7 HOH A 215 815 211 HOH HOH . J 7 HOH A 216 816 221 HOH HOH . J 7 HOH A 217 817 189 HOH HOH . J 7 HOH A 218 818 196 HOH HOH . J 7 HOH A 219 819 188 HOH HOH . J 7 HOH A 220 820 208 HOH HOH . J 7 HOH A 221 821 195 HOH HOH . J 7 HOH A 222 822 193 HOH HOH . J 7 HOH A 223 823 184 HOH HOH . J 7 HOH A 224 824 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . F 4 17.684 36.446 12.68 0.5 63.26 ? C1 GOL 505 A 1 HETATM 2 C C1 GOL . B . F 4 18.765 38.402 13.816 0.5 39.94 ? C1 GOL 505 A 1 HETATM 3 O O1 GOL . A . F 4 16.383 35.857 12.777 0.5 62.28 ? O1 GOL 505 A 1 HETATM 4 O O1 GOL . B . F 4 19.818 37.812 14.575 0.5 36.56 ? O1 GOL 505 A 1 HETATM 5 C C2 GOL . A . F 4 17.649 37.834 13.31 0.5 63.23 ? C2 GOL 505 A 1 HETATM 6 C C2 GOL . B . F 4 17.527 37.519 13.846 0.5 43.38 ? C2 GOL 505 A 1 HETATM 7 O O2 GOL . A . F 4 16.987 37.78 14.573 0.5 63.13 ? O2 GOL 505 A 1 HETATM 8 O O2 GOL . B . F 4 16.373 38.316 13.586 0.5 43.72 ? O2 GOL 505 A 1 HETATM 9 C C3 GOL . A . F 4 19.064 38.372 13.484 0.5 62.38 ? C3 GOL 505 A 1 HETATM 10 C C3 GOL . B . F 4 17.62 36.445 12.769 0.5 43.46 ? C3 GOL 505 A 1 HETATM 11 O O3 GOL . A . F 4 19.686 37.811 14.637 0.5 61.16 ? O3 GOL 505 A 1 HETATM 12 O O3 GOL . B . F 4 16.377 35.738 12.749 0.5 42.86 ? O3 GOL 505 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #