data_6QEF
#
_model_server_result.job_id            j99wveovNJPZsO3i4R82yg 
_model_server_result.datetime_utc      '2024-11-05 23:15:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qef 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":506}' 
#
_entry.id    6QEF 
#
_exptl.entry_id    6QEF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QEF 
_cell.length_a            88.36 
_cell.length_b            99.4 
_cell.length_c            100.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QEF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 145 A ASP 251 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc2 A OD2 ASP 145 A ASP 251 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc3 A OD2 ASP 156 A ASP 262 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc4 A OD1 ASP 156 A ASP 262 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? 
metalc ? metalc5 A NE2 HIS 225 A HIS 331 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc6 A OE2 GLU 258 A GLU 364 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc7 A OE2 GLU 353 A GLU 459 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc8 A OE1 GLU 353 A GLU 459 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc9 H O12 HZW . A HZW 507 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc10 H O13 HZW . A HZW 507 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc11 H O5 HZW . A HZW 507 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc12 H O13 HZW . A HZW 507 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     6QEF 
_atom_sites.fract_transf_matrix[1][1]    0.011317 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01006 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00994 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 501 1 EDO EDO . 
C 2 EDO A 1 502 3 EDO EDO . 
D 2 EDO A 1 503 4 EDO EDO . 
E 2 EDO A 1 504 5 EDO EDO . 
F 2 EDO A 1 505 6 EDO EDO . 
G 3 GOL A 1 506 1 GOL GOL . 
H 4 HZW A 1 507 1 HZW INH . 
I 5 MN A 1 508 501 MN MN2 . 
J 5 MN A 1 509 502 MN MN2 . 
K 6 HOH A 1 601 166 HOH HOH . 
K 6 HOH A 2 602 7 HOH HOH . 
K 6 HOH A 3 603 1 HOH HOH . 
K 6 HOH A 4 604 141 HOH HOH . 
K 6 HOH A 5 605 2 HOH HOH . 
K 6 HOH A 6 606 70 HOH HOH . 
K 6 HOH A 7 607 23 HOH HOH . 
K 6 HOH A 8 608 3 HOH HOH . 
K 6 HOH A 9 609 152 HOH HOH . 
K 6 HOH A 10 610 66 HOH HOH . 
K 6 HOH A 11 611 106 HOH HOH . 
K 6 HOH A 12 612 83 HOH HOH . 
K 6 HOH A 13 613 99 HOH HOH . 
K 6 HOH A 14 614 81 HOH HOH . 
K 6 HOH A 15 615 51 HOH HOH . 
K 6 HOH A 16 616 5 HOH HOH . 
K 6 HOH A 17 617 121 HOH HOH . 
K 6 HOH A 18 618 20 HOH HOH . 
K 6 HOH A 19 619 44 HOH HOH . 
K 6 HOH A 20 620 47 HOH HOH . 
K 6 HOH A 21 621 9 HOH HOH . 
K 6 HOH A 22 622 57 HOH HOH . 
K 6 HOH A 23 623 124 HOH HOH . 
K 6 HOH A 24 624 158 HOH HOH . 
K 6 HOH A 25 625 21 HOH HOH . 
K 6 HOH A 26 626 28 HOH HOH . 
K 6 HOH A 27 627 38 HOH HOH . 
K 6 HOH A 28 628 24 HOH HOH . 
K 6 HOH A 29 629 110 HOH HOH . 
K 6 HOH A 30 630 86 HOH HOH . 
K 6 HOH A 31 631 78 HOH HOH . 
K 6 HOH A 32 632 130 HOH HOH . 
K 6 HOH A 33 633 10 HOH HOH . 
K 6 HOH A 34 634 6 HOH HOH . 
K 6 HOH A 35 635 52 HOH HOH . 
K 6 HOH A 36 636 56 HOH HOH . 
K 6 HOH A 37 637 133 HOH HOH . 
K 6 HOH A 38 638 14 HOH HOH . 
K 6 HOH A 39 639 46 HOH HOH . 
K 6 HOH A 40 640 58 HOH HOH . 
K 6 HOH A 41 641 12 HOH HOH . 
K 6 HOH A 42 642 50 HOH HOH . 
K 6 HOH A 43 643 96 HOH HOH . 
K 6 HOH A 44 644 64 HOH HOH . 
K 6 HOH A 45 645 53 HOH HOH . 
K 6 HOH A 46 646 17 HOH HOH . 
K 6 HOH A 47 647 37 HOH HOH . 
K 6 HOH A 48 648 71 HOH HOH . 
K 6 HOH A 49 649 74 HOH HOH . 
K 6 HOH A 50 650 42 HOH HOH . 
K 6 HOH A 51 651 155 HOH HOH . 
K 6 HOH A 52 652 87 HOH HOH . 
K 6 HOH A 53 653 119 HOH HOH . 
K 6 HOH A 54 654 137 HOH HOH . 
K 6 HOH A 55 655 138 HOH HOH . 
K 6 HOH A 56 656 170 HOH HOH . 
K 6 HOH A 57 657 139 HOH HOH . 
K 6 HOH A 58 658 34 HOH HOH . 
K 6 HOH A 59 659 61 HOH HOH . 
K 6 HOH A 60 660 35 HOH HOH . 
K 6 HOH A 61 661 126 HOH HOH . 
K 6 HOH A 62 662 123 HOH HOH . 
K 6 HOH A 63 663 108 HOH HOH . 
K 6 HOH A 64 664 116 HOH HOH . 
K 6 HOH A 65 665 147 HOH HOH . 
K 6 HOH A 66 666 13 HOH HOH . 
K 6 HOH A 67 667 159 HOH HOH . 
K 6 HOH A 68 668 8 HOH HOH . 
K 6 HOH A 69 669 41 HOH HOH . 
K 6 HOH A 70 670 91 HOH HOH . 
K 6 HOH A 71 671 73 HOH HOH . 
K 6 HOH A 72 672 15 HOH HOH . 
K 6 HOH A 73 673 25 HOH HOH . 
K 6 HOH A 74 674 89 HOH HOH . 
K 6 HOH A 75 675 144 HOH HOH . 
K 6 HOH A 76 676 79 HOH HOH . 
K 6 HOH A 77 677 68 HOH HOH . 
K 6 HOH A 78 678 4 HOH HOH . 
K 6 HOH A 79 679 183 HOH HOH . 
K 6 HOH A 80 680 45 HOH HOH . 
K 6 HOH A 81 681 43 HOH HOH . 
K 6 HOH A 82 682 175 HOH HOH . 
K 6 HOH A 83 683 31 HOH HOH . 
K 6 HOH A 84 684 107 HOH HOH . 
K 6 HOH A 85 685 55 HOH HOH . 
K 6 HOH A 86 686 97 HOH HOH . 
K 6 HOH A 87 687 11 HOH HOH . 
K 6 HOH A 88 688 30 HOH HOH . 
K 6 HOH A 89 689 98 HOH HOH . 
K 6 HOH A 90 690 77 HOH HOH . 
K 6 HOH A 91 691 161 HOH HOH . 
K 6 HOH A 92 692 165 HOH HOH . 
K 6 HOH A 93 693 129 HOH HOH . 
K 6 HOH A 94 694 19 HOH HOH . 
K 6 HOH A 95 695 120 HOH HOH . 
K 6 HOH A 96 696 22 HOH HOH . 
K 6 HOH A 97 697 26 HOH HOH . 
K 6 HOH A 98 698 72 HOH HOH . 
K 6 HOH A 99 699 18 HOH HOH . 
K 6 HOH A 100 700 132 HOH HOH . 
K 6 HOH A 101 701 36 HOH HOH . 
K 6 HOH A 102 702 75 HOH HOH . 
K 6 HOH A 103 703 94 HOH HOH . 
K 6 HOH A 104 704 76 HOH HOH . 
K 6 HOH A 105 705 115 HOH HOH . 
K 6 HOH A 106 706 88 HOH HOH . 
K 6 HOH A 107 707 118 HOH HOH . 
K 6 HOH A 108 708 148 HOH HOH . 
K 6 HOH A 109 709 164 HOH HOH . 
K 6 HOH A 110 710 134 HOH HOH . 
K 6 HOH A 111 711 92 HOH HOH . 
K 6 HOH A 112 712 150 HOH HOH . 
K 6 HOH A 113 713 101 HOH HOH . 
K 6 HOH A 114 714 103 HOH HOH . 
K 6 HOH A 115 715 128 HOH HOH . 
K 6 HOH A 116 716 33 HOH HOH . 
K 6 HOH A 117 717 27 HOH HOH . 
K 6 HOH A 118 718 102 HOH HOH . 
K 6 HOH A 119 719 100 HOH HOH . 
K 6 HOH A 120 720 40 HOH HOH . 
K 6 HOH A 121 721 146 HOH HOH . 
K 6 HOH A 122 722 16 HOH HOH . 
K 6 HOH A 123 723 82 HOH HOH . 
K 6 HOH A 124 724 29 HOH HOH . 
K 6 HOH A 125 725 85 HOH HOH . 
K 6 HOH A 126 726 143 HOH HOH . 
K 6 HOH A 127 727 135 HOH HOH . 
K 6 HOH A 128 728 65 HOH HOH . 
K 6 HOH A 129 729 48 HOH HOH . 
K 6 HOH A 130 730 84 HOH HOH . 
K 6 HOH A 131 731 169 HOH HOH . 
K 6 HOH A 132 732 172 HOH HOH . 
K 6 HOH A 133 733 54 HOH HOH . 
K 6 HOH A 134 734 95 HOH HOH . 
K 6 HOH A 135 735 60 HOH HOH . 
K 6 HOH A 136 736 90 HOH HOH . 
K 6 HOH A 137 737 142 HOH HOH . 
K 6 HOH A 138 738 49 HOH HOH . 
K 6 HOH A 139 739 182 HOH HOH . 
K 6 HOH A 140 740 122 HOH HOH . 
K 6 HOH A 141 741 113 HOH HOH . 
K 6 HOH A 142 742 174 HOH HOH . 
K 6 HOH A 143 743 39 HOH HOH . 
K 6 HOH A 144 744 117 HOH HOH . 
K 6 HOH A 145 745 93 HOH HOH . 
K 6 HOH A 146 746 63 HOH HOH . 
K 6 HOH A 147 747 32 HOH HOH . 
K 6 HOH A 148 748 162 HOH HOH . 
K 6 HOH A 149 749 179 HOH HOH . 
K 6 HOH A 150 750 136 HOH HOH . 
K 6 HOH A 151 751 145 HOH HOH . 
K 6 HOH A 152 752 185 HOH HOH . 
K 6 HOH A 153 753 67 HOH HOH . 
K 6 HOH A 154 754 176 HOH HOH . 
K 6 HOH A 155 755 105 HOH HOH . 
K 6 HOH A 156 756 104 HOH HOH . 
K 6 HOH A 157 757 109 HOH HOH . 
K 6 HOH A 158 758 127 HOH HOH . 
K 6 HOH A 159 759 140 HOH HOH . 
K 6 HOH A 160 760 59 HOH HOH . 
K 6 HOH A 161 761 114 HOH HOH . 
K 6 HOH A 162 762 62 HOH HOH . 
K 6 HOH A 163 763 168 HOH HOH . 
K 6 HOH A 164 764 167 HOH HOH . 
K 6 HOH A 165 765 154 HOH HOH . 
K 6 HOH A 166 766 111 HOH HOH . 
K 6 HOH A 167 767 69 HOH HOH . 
K 6 HOH A 168 768 149 HOH HOH . 
K 6 HOH A 169 769 177 HOH HOH . 
K 6 HOH A 170 770 112 HOH HOH . 
K 6 HOH A 171 771 153 HOH HOH . 
K 6 HOH A 172 772 163 HOH HOH . 
K 6 HOH A 173 773 131 HOH HOH . 
K 6 HOH A 174 774 173 HOH HOH . 
K 6 HOH A 175 775 160 HOH HOH . 
K 6 HOH A 176 776 151 HOH HOH . 
K 6 HOH A 177 777 125 HOH HOH . 
K 6 HOH A 178 778 156 HOH HOH . 
K 6 HOH A 179 779 80 HOH HOH . 
K 6 HOH A 180 780 157 HOH HOH . 
K 6 HOH A 181 781 180 HOH HOH . 
K 6 HOH A 182 782 184 HOH HOH . 
K 6 HOH A 183 783 178 HOH HOH . 
K 6 HOH A 184 784 181 HOH HOH . 
K 6 HOH A 185 785 171 HOH HOH . 
K 6 HOH A 186 786 186 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . A . G 3 -18.692 -38.019 13.321 0.5 34.19 ? C1 GOL 506 A 1 
HETATM 2 C C1 GOL . B . G 3 -17.546 -36.341 12.576 0.5 49.14 ? C1 GOL 506 A 1 
HETATM 3 O O1 GOL . A . G 3 -19.491 -37.8 14.48 0.5 29.73 ? O1 GOL 506 A 1 
HETATM 4 O O1 GOL . B . G 3 -16.241 -35.767 12.668 0.5 48.7 ? O1 GOL 506 A 1 
HETATM 5 C C2 GOL . A . G 3 -17.22 -38.071 13.707 0.5 36.48 ? C2 GOL 506 A 1 
HETATM 6 C C2 GOL . B . G 3 -17.503 -37.794 13.035 0.5 50.25 ? C2 GOL 506 A 1 
HETATM 7 O O2 GOL . A . G 3 -16.491 -38.721 12.665 0.5 36.28 ? O2 GOL 506 A 1 
HETATM 8 O O2 GOL . B . G 3 -16.764 -37.89 14.252 0.5 51.45 ? O2 GOL 506 A 1 
HETATM 9 C C3 GOL . A . G 3 -16.662 -36.668 13.9 0.5 38.55 ? C3 GOL 506 A 1 
HETATM 10 C C3 GOL . B . G 3 -18.922 -38.308 13.246 0.5 47.79 ? C3 GOL 506 A 1 
HETATM 11 O O3 GOL . A . G 3 -16.598 -35.98 12.645 0.5 42.23 ? O3 GOL 506 A 1 
HETATM 12 O O3 GOL . B . G 3 -19.454 -37.774 14.457 0.5 45.6 ? O3 GOL 506 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           39 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#