data_6QEF # _model_server_result.job_id hD8kvF-EXXXw4z2yGBIw8g _model_server_result.datetime_utc '2024-11-27 02:47:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 6QEF # _exptl.entry_id 6QEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QEF _cell.length_a 88.36 _cell.length_b 99.4 _cell.length_c 100.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 145 A ASP 251 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A OD2 ASP 145 A ASP 251 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc3 A OD2 ASP 156 A ASP 262 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 A OD1 ASP 156 A ASP 262 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc5 A NE2 HIS 225 A HIS 331 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 A OE2 GLU 258 A GLU 364 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc7 A OE2 GLU 353 A GLU 459 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc8 A OE1 GLU 353 A GLU 459 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc9 H O12 HZW . A HZW 507 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc10 H O13 HZW . A HZW 507 1_555 I MN MN . A MN 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc11 H O5 HZW . A HZW 507 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc12 H O13 HZW . A HZW 507 1_555 J MN MN . A MN 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 6QEF _atom_sites.fract_transf_matrix[1][1] 0.011317 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 2 EDO A 1 502 3 EDO EDO . D 2 EDO A 1 503 4 EDO EDO . E 2 EDO A 1 504 5 EDO EDO . F 2 EDO A 1 505 6 EDO EDO . G 3 GOL A 1 506 1 GOL GOL . H 4 HZW A 1 507 1 HZW INH . I 5 MN A 1 508 501 MN MN2 . J 5 MN A 1 509 502 MN MN2 . K 6 HOH A 1 601 166 HOH HOH . K 6 HOH A 2 602 7 HOH HOH . K 6 HOH A 3 603 1 HOH HOH . K 6 HOH A 4 604 141 HOH HOH . K 6 HOH A 5 605 2 HOH HOH . K 6 HOH A 6 606 70 HOH HOH . K 6 HOH A 7 607 23 HOH HOH . K 6 HOH A 8 608 3 HOH HOH . K 6 HOH A 9 609 152 HOH HOH . K 6 HOH A 10 610 66 HOH HOH . K 6 HOH A 11 611 106 HOH HOH . K 6 HOH A 12 612 83 HOH HOH . K 6 HOH A 13 613 99 HOH HOH . K 6 HOH A 14 614 81 HOH HOH . K 6 HOH A 15 615 51 HOH HOH . K 6 HOH A 16 616 5 HOH HOH . K 6 HOH A 17 617 121 HOH HOH . K 6 HOH A 18 618 20 HOH HOH . K 6 HOH A 19 619 44 HOH HOH . K 6 HOH A 20 620 47 HOH HOH . K 6 HOH A 21 621 9 HOH HOH . K 6 HOH A 22 622 57 HOH HOH . K 6 HOH A 23 623 124 HOH HOH . K 6 HOH A 24 624 158 HOH HOH . K 6 HOH A 25 625 21 HOH HOH . K 6 HOH A 26 626 28 HOH HOH . K 6 HOH A 27 627 38 HOH HOH . K 6 HOH A 28 628 24 HOH HOH . K 6 HOH A 29 629 110 HOH HOH . K 6 HOH A 30 630 86 HOH HOH . K 6 HOH A 31 631 78 HOH HOH . K 6 HOH A 32 632 130 HOH HOH . K 6 HOH A 33 633 10 HOH HOH . K 6 HOH A 34 634 6 HOH HOH . K 6 HOH A 35 635 52 HOH HOH . K 6 HOH A 36 636 56 HOH HOH . K 6 HOH A 37 637 133 HOH HOH . K 6 HOH A 38 638 14 HOH HOH . K 6 HOH A 39 639 46 HOH HOH . K 6 HOH A 40 640 58 HOH HOH . K 6 HOH A 41 641 12 HOH HOH . K 6 HOH A 42 642 50 HOH HOH . K 6 HOH A 43 643 96 HOH HOH . K 6 HOH A 44 644 64 HOH HOH . K 6 HOH A 45 645 53 HOH HOH . K 6 HOH A 46 646 17 HOH HOH . K 6 HOH A 47 647 37 HOH HOH . K 6 HOH A 48 648 71 HOH HOH . K 6 HOH A 49 649 74 HOH HOH . K 6 HOH A 50 650 42 HOH HOH . K 6 HOH A 51 651 155 HOH HOH . K 6 HOH A 52 652 87 HOH HOH . K 6 HOH A 53 653 119 HOH HOH . K 6 HOH A 54 654 137 HOH HOH . K 6 HOH A 55 655 138 HOH HOH . K 6 HOH A 56 656 170 HOH HOH . K 6 HOH A 57 657 139 HOH HOH . K 6 HOH A 58 658 34 HOH HOH . K 6 HOH A 59 659 61 HOH HOH . K 6 HOH A 60 660 35 HOH HOH . K 6 HOH A 61 661 126 HOH HOH . K 6 HOH A 62 662 123 HOH HOH . K 6 HOH A 63 663 108 HOH HOH . K 6 HOH A 64 664 116 HOH HOH . K 6 HOH A 65 665 147 HOH HOH . K 6 HOH A 66 666 13 HOH HOH . K 6 HOH A 67 667 159 HOH HOH . K 6 HOH A 68 668 8 HOH HOH . K 6 HOH A 69 669 41 HOH HOH . K 6 HOH A 70 670 91 HOH HOH . K 6 HOH A 71 671 73 HOH HOH . K 6 HOH A 72 672 15 HOH HOH . K 6 HOH A 73 673 25 HOH HOH . K 6 HOH A 74 674 89 HOH HOH . K 6 HOH A 75 675 144 HOH HOH . K 6 HOH A 76 676 79 HOH HOH . K 6 HOH A 77 677 68 HOH HOH . K 6 HOH A 78 678 4 HOH HOH . K 6 HOH A 79 679 183 HOH HOH . K 6 HOH A 80 680 45 HOH HOH . K 6 HOH A 81 681 43 HOH HOH . K 6 HOH A 82 682 175 HOH HOH . K 6 HOH A 83 683 31 HOH HOH . K 6 HOH A 84 684 107 HOH HOH . K 6 HOH A 85 685 55 HOH HOH . K 6 HOH A 86 686 97 HOH HOH . K 6 HOH A 87 687 11 HOH HOH . K 6 HOH A 88 688 30 HOH HOH . K 6 HOH A 89 689 98 HOH HOH . K 6 HOH A 90 690 77 HOH HOH . K 6 HOH A 91 691 161 HOH HOH . K 6 HOH A 92 692 165 HOH HOH . K 6 HOH A 93 693 129 HOH HOH . K 6 HOH A 94 694 19 HOH HOH . K 6 HOH A 95 695 120 HOH HOH . K 6 HOH A 96 696 22 HOH HOH . K 6 HOH A 97 697 26 HOH HOH . K 6 HOH A 98 698 72 HOH HOH . K 6 HOH A 99 699 18 HOH HOH . K 6 HOH A 100 700 132 HOH HOH . K 6 HOH A 101 701 36 HOH HOH . K 6 HOH A 102 702 75 HOH HOH . K 6 HOH A 103 703 94 HOH HOH . K 6 HOH A 104 704 76 HOH HOH . K 6 HOH A 105 705 115 HOH HOH . K 6 HOH A 106 706 88 HOH HOH . K 6 HOH A 107 707 118 HOH HOH . K 6 HOH A 108 708 148 HOH HOH . K 6 HOH A 109 709 164 HOH HOH . K 6 HOH A 110 710 134 HOH HOH . K 6 HOH A 111 711 92 HOH HOH . K 6 HOH A 112 712 150 HOH HOH . K 6 HOH A 113 713 101 HOH HOH . K 6 HOH A 114 714 103 HOH HOH . K 6 HOH A 115 715 128 HOH HOH . K 6 HOH A 116 716 33 HOH HOH . K 6 HOH A 117 717 27 HOH HOH . K 6 HOH A 118 718 102 HOH HOH . K 6 HOH A 119 719 100 HOH HOH . K 6 HOH A 120 720 40 HOH HOH . K 6 HOH A 121 721 146 HOH HOH . K 6 HOH A 122 722 16 HOH HOH . K 6 HOH A 123 723 82 HOH HOH . K 6 HOH A 124 724 29 HOH HOH . K 6 HOH A 125 725 85 HOH HOH . K 6 HOH A 126 726 143 HOH HOH . K 6 HOH A 127 727 135 HOH HOH . K 6 HOH A 128 728 65 HOH HOH . K 6 HOH A 129 729 48 HOH HOH . K 6 HOH A 130 730 84 HOH HOH . K 6 HOH A 131 731 169 HOH HOH . K 6 HOH A 132 732 172 HOH HOH . K 6 HOH A 133 733 54 HOH HOH . K 6 HOH A 134 734 95 HOH HOH . K 6 HOH A 135 735 60 HOH HOH . K 6 HOH A 136 736 90 HOH HOH . K 6 HOH A 137 737 142 HOH HOH . K 6 HOH A 138 738 49 HOH HOH . K 6 HOH A 139 739 182 HOH HOH . K 6 HOH A 140 740 122 HOH HOH . K 6 HOH A 141 741 113 HOH HOH . K 6 HOH A 142 742 174 HOH HOH . K 6 HOH A 143 743 39 HOH HOH . K 6 HOH A 144 744 117 HOH HOH . K 6 HOH A 145 745 93 HOH HOH . K 6 HOH A 146 746 63 HOH HOH . K 6 HOH A 147 747 32 HOH HOH . K 6 HOH A 148 748 162 HOH HOH . K 6 HOH A 149 749 179 HOH HOH . K 6 HOH A 150 750 136 HOH HOH . K 6 HOH A 151 751 145 HOH HOH . K 6 HOH A 152 752 185 HOH HOH . K 6 HOH A 153 753 67 HOH HOH . K 6 HOH A 154 754 176 HOH HOH . K 6 HOH A 155 755 105 HOH HOH . K 6 HOH A 156 756 104 HOH HOH . K 6 HOH A 157 757 109 HOH HOH . K 6 HOH A 158 758 127 HOH HOH . K 6 HOH A 159 759 140 HOH HOH . K 6 HOH A 160 760 59 HOH HOH . K 6 HOH A 161 761 114 HOH HOH . K 6 HOH A 162 762 62 HOH HOH . K 6 HOH A 163 763 168 HOH HOH . K 6 HOH A 164 764 167 HOH HOH . K 6 HOH A 165 765 154 HOH HOH . K 6 HOH A 166 766 111 HOH HOH . K 6 HOH A 167 767 69 HOH HOH . K 6 HOH A 168 768 149 HOH HOH . K 6 HOH A 169 769 177 HOH HOH . K 6 HOH A 170 770 112 HOH HOH . K 6 HOH A 171 771 153 HOH HOH . K 6 HOH A 172 772 163 HOH HOH . K 6 HOH A 173 773 131 HOH HOH . K 6 HOH A 174 774 173 HOH HOH . K 6 HOH A 175 775 160 HOH HOH . K 6 HOH A 176 776 151 HOH HOH . K 6 HOH A 177 777 125 HOH HOH . K 6 HOH A 178 778 156 HOH HOH . K 6 HOH A 179 779 80 HOH HOH . K 6 HOH A 180 780 157 HOH HOH . K 6 HOH A 181 781 180 HOH HOH . K 6 HOH A 182 782 184 HOH HOH . K 6 HOH A 183 783 178 HOH HOH . K 6 HOH A 184 784 181 HOH HOH . K 6 HOH A 185 785 171 HOH HOH . K 6 HOH A 186 786 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . G 3 -18.692 -38.019 13.321 0.5 34.19 ? C1 GOL 506 A 1 HETATM 2 C C1 GOL . B . G 3 -17.546 -36.341 12.576 0.5 49.14 ? C1 GOL 506 A 1 HETATM 3 O O1 GOL . A . G 3 -19.491 -37.8 14.48 0.5 29.73 ? O1 GOL 506 A 1 HETATM 4 O O1 GOL . B . G 3 -16.241 -35.767 12.668 0.5 48.7 ? O1 GOL 506 A 1 HETATM 5 C C2 GOL . A . G 3 -17.22 -38.071 13.707 0.5 36.48 ? C2 GOL 506 A 1 HETATM 6 C C2 GOL . B . G 3 -17.503 -37.794 13.035 0.5 50.25 ? C2 GOL 506 A 1 HETATM 7 O O2 GOL . A . G 3 -16.491 -38.721 12.665 0.5 36.28 ? O2 GOL 506 A 1 HETATM 8 O O2 GOL . B . G 3 -16.764 -37.89 14.252 0.5 51.45 ? O2 GOL 506 A 1 HETATM 9 C C3 GOL . A . G 3 -16.662 -36.668 13.9 0.5 38.55 ? C3 GOL 506 A 1 HETATM 10 C C3 GOL . B . G 3 -18.922 -38.308 13.246 0.5 47.79 ? C3 GOL 506 A 1 HETATM 11 O O3 GOL . A . G 3 -16.598 -35.98 12.645 0.5 42.23 ? O3 GOL 506 A 1 HETATM 12 O O3 GOL . B . G 3 -19.454 -37.774 14.457 0.5 45.6 ? O3 GOL 506 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #