data_6QEX # _model_server_result.job_id W-EPv5sslkdK_rT1nANyqw _model_server_result.datetime_utc '2025-08-31 10:58:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1302}' # _entry.id 6QEX # _exptl.entry_id 6QEX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QEX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 23 B CYS 23 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 140 B CYS 140 1_555 B SG CYS 200 B CYS 200 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 140 B CYS 140 1_555 B SG CYS 200 B CYS 200 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 220 B CYS 220 1_555 C SG CYS 137 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 C SG CYS 149 C CYS 149 1_555 C SG CYS 204 C CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 91 A ASN 91 1_555 D C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale2 A ND2 ASN 94 A ASN 94 1_555 E C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale3 A ND2 ASN 99 A ASN 99 1_555 F C1 NAG . A NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.205 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 444 n n C1 O1 NAG sing 445 n n C1 O5 NAG sing 446 n n C1 H1 NAG sing 447 n n C2 C3 NAG sing 448 n n C2 N2 NAG sing 449 n n C2 H2 NAG sing 450 n n C3 C4 NAG sing 451 n n C3 O3 NAG sing 452 n n C3 H3 NAG sing 453 n n C4 C5 NAG sing 454 n n C4 O4 NAG sing 455 n n C4 H4 NAG sing 456 n n C5 C6 NAG sing 457 n n C5 O5 NAG sing 458 n n C5 H5 NAG sing 459 n n C6 O6 NAG sing 460 n n C6 H61 NAG sing 461 n n C6 H62 NAG sing 462 n n C7 C8 NAG sing 463 n n C7 N2 NAG sing 464 n n C7 O7 NAG doub 465 n n C8 H81 NAG sing 466 n n C8 H82 NAG sing 467 n n C8 H83 NAG sing 468 n n N2 HN2 NAG sing 469 n n O1 HO1 NAG sing 470 n n O3 HO3 NAG sing 471 n n O4 HO4 NAG sing 472 n n O6 HO6 NAG sing 473 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6QEX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 1301 1300 NAG NAG . E 4 NAG A 1 1302 1301 NAG NAG . F 4 NAG A 1 1303 1302 NAG NAG . G 5 CLR A 1 1304 1 CLR CLR . H 5 CLR A 1 1305 2 CLR CLR . I 5 CLR A 1 1306 3 CLR CLR . J 5 CLR A 1 1307 4 CLR CLR . K 5 CLR A 1 1308 5 CLR CLR . L 5 CLR A 1 1309 6 CLR CLR . M 5 CLR A 1 1310 7 CLR CLR . N 5 CLR A 1 1311 8 CLR CLR . O 5 CLR A 1 1312 9 CLR CLR . P 5 CLR A 1 1313 10 CLR CLR . Q 5 CLR A 1 1314 11 CLR CLR . R 5 CLR A 1 1315 12 CLR CLR . S 5 CLR A 1 1316 13 CLR CLR . T 5 CLR A 1 1317 14 CLR CLR . U 5 CLR A 1 1318 15 CLR CLR . V 5 CLR A 1 1319 16 CLR CLR . W 6 TA1 A 1 1320 1 TA1 TA1 . X 7 3PE A 1 1321 1 3PE 3PE . Y 7 3PE A 1 1322 2 3PE 3PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 155.422 169.86 114.132 1 102.51 ? C1 NAG 1302 A 1 HETATM 2 C C2 NAG . . . E 4 154.271 169.298 113.333 1 102.51 ? C2 NAG 1302 A 1 HETATM 3 C C3 NAG . . . E 4 154.68 168.096 112.548 1 102.51 ? C3 NAG 1302 A 1 HETATM 4 C C4 NAG . . . E 4 155.85 168.355 111.659 1 102.51 ? C4 NAG 1302 A 1 HETATM 5 C C5 NAG . . . E 4 157.027 169.026 112.395 1 102.51 ? C5 NAG 1302 A 1 HETATM 6 C C6 NAG . . . E 4 157.989 169.536 111.378 1 102.51 ? C6 NAG 1302 A 1 HETATM 7 C C7 NAG . . . E 4 153.016 168.024 115.341 1 102.51 ? C7 NAG 1302 A 1 HETATM 8 C C8 NAG . . . E 4 151.697 167.847 116.095 1 102.51 ? C8 NAG 1302 A 1 HETATM 9 N N2 NAG . . . E 4 153.066 168.984 114.2 1 102.51 ? N2 NAG 1302 A 1 HETATM 10 O O3 NAG . . . E 4 153.537 167.664 111.732 1 102.51 ? O3 NAG 1302 A 1 HETATM 11 O O4 NAG . . . E 4 156.299 167.108 111.128 1 102.51 ? O4 NAG 1302 A 1 HETATM 12 O O5 NAG . . . E 4 156.623 170.14 113.241 1 102.51 ? O5 NAG 1302 A 1 HETATM 13 O O6 NAG . . . E 4 158.105 170.926 111.537 1 102.51 ? O6 NAG 1302 A 1 HETATM 14 O O7 NAG . . . E 4 153.946 167.403 115.689 1 102.51 ? O7 NAG 1302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 429 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #