data_6QF7 # _model_server_result.job_id tbiND31J6cmWKh7A317mgA _model_server_result.datetime_utc '2025-07-19 13:33:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qf7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":701}' # _entry.id 6QF7 # _exptl.entry_id 6QF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QF7 _cell.length_a 131.45 _cell.length_b 131.45 _cell.length_c 238.35 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,H,I 1 1 C,D,E,G,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG D 701 NAG 3 n E NAG 2 E 2 NAG D 702 NAG 4 n F GLC 1 F 1 GLC A 401 MAL 4 n F GLC 2 F 2 GLC A 401 MAL 4 n G GLC 1 G 1 GLC C 401 MAL 4 n G GLC 2 G 2 GLC C 401 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 12 B CYS 341 1_555 B SG CYS 129 B CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? disulf ? disulf2 B SG CYS 40 B CYS 378 1_555 B SG CYS 56 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 B SG CYS 48 B CYS 386 1_555 B SG CYS 118 B CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 79 B CYS 417 1_555 B SG CYS 82 B CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 B SG CYS 143 B CYS 481 1_555 B SG CYS 212 B CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf6 B SG CYS 175 B CYS 513 1_555 B SG CYS 191 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 202 B CYS 540 1_555 B SG CYS 229 B CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 D SG CYS 12 D CYS 340 1_555 D SG CYS 129 D CYS 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf9 D SG CYS 40 D CYS 378 1_555 D SG CYS 56 D CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 D SG CYS 48 D CYS 386 1_555 D SG CYS 118 D CYS 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 D SG CYS 79 D CYS 417 1_555 D SG CYS 82 D CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 D SG CYS 143 D CYS 481 1_555 D SG CYS 212 D CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 D SG CYS 175 D CYS 513 1_555 D SG CYS 191 D CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf14 D SG CYS 202 D CYS 540 1_555 D SG CYS 229 D CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B NE2 HIS 55 B HIS 393 1_555 I C3 0G6 . B 0G6 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? covale ? covale2 B ND2 ASN 76 B ASN 414 1_555 H C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 B OG SER 206 B SER 544 1_555 I C2 0G6 . B 0G6 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.533 ? covale ? covale4 D NE2 HIS 55 D HIS 393 1_555 J C3 0G6 . D 0G6 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale5 D OG SER 206 D SER 544 1_555 J C2 0G6 . D 0G6 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale7 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing covale ? covale8 G O4 GLC . G GLC 1 1_555 G C1 GLC . G GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 325 n n C1 O1 NAG sing 326 n n C1 O5 NAG sing 327 n n C1 H1 NAG sing 328 n n C2 C3 NAG sing 329 n n C2 N2 NAG sing 330 n n C2 H2 NAG sing 331 n n C3 C4 NAG sing 332 n n C3 O3 NAG sing 333 n n C3 H3 NAG sing 334 n n C4 C5 NAG sing 335 n n C4 O4 NAG sing 336 n n C4 H4 NAG sing 337 n n C5 C6 NAG sing 338 n n C5 O5 NAG sing 339 n n C5 H5 NAG sing 340 n n C6 O6 NAG sing 341 n n C6 H61 NAG sing 342 n n C6 H62 NAG sing 343 n n C7 C8 NAG sing 344 n n C7 N2 NAG sing 345 n n C7 O7 NAG doub 346 n n C8 H81 NAG sing 347 n n C8 H82 NAG sing 348 n n C8 H83 NAG sing 349 n n N2 HN2 NAG sing 350 n n O1 HO1 NAG sing 351 n n O3 HO3 NAG sing 352 n n O4 HO4 NAG sing 353 n n O6 HO6 NAG sing 354 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6QF7 _atom_sites.fract_transf_matrix[1][1] 0.007607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007607 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 NAG B 1 701 701 NAG NAG . I 6 0G6 B 1 702 711 0G6 0G6 . J 6 0G6 D 1 703 711 0G6 0G6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 5 13.385 99.075 296.387 1 42.6 ? C1 NAG 701 B 1 HETATM 2 C C2 NAG . . . H 5 14.103 99.961 297.398 0.5 42.51 ? C2 NAG 701 B 1 HETATM 3 C C3 NAG . . . H 5 13.345 101.268 297.592 0.5 42.21 ? C3 NAG 701 B 1 HETATM 4 C C4 NAG . . . H 5 12.586 101.642 296.324 0.7 42.03 ? C4 NAG 701 B 1 HETATM 5 C C5 NAG . . . H 5 11.596 100.553 295.92 1 41.74 ? C5 NAG 701 B 1 HETATM 6 C C6 NAG . . . H 5 11.521 100.424 294.403 1 41.13 ? C6 NAG 701 B 1 HETATM 7 C C7 NAG . . . H 5 14.044 99.894 299.822 1 42.37 ? C7 NAG 701 B 1 HETATM 8 C C8 NAG . . . H 5 15.057 100.947 300.163 1 41.86 ? C8 NAG 701 B 1 HETATM 9 N N2 NAG . . . H 5 14.232 99.268 298.664 1 42.82 ? N2 NAG 701 B 1 HETATM 10 O O3 NAG . . . H 5 14.269 102.311 297.921 0.5 41.84 ? O3 NAG 701 B 1 HETATM 11 O O4 NAG . . . H 5 11.881 102.87 296.538 0.5 42.18 ? O4 NAG 701 B 1 HETATM 12 O O5 NAG . . . H 5 11.98 99.3 296.483 0.5 42.22 ? O5 NAG 701 B 1 HETATM 13 O O6 NAG . . . H 5 11.487 101.728 293.813 1 40.62 ? O6 NAG 701 B 1 HETATM 14 O O7 NAG . . . H 5 13.109 99.63 300.56 1 42.59 ? O7 NAG 701 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #