data_6QFA # _model_server_result.job_id Z_qX3oeJHsHGDgVQnA86Uw _model_server_result.datetime_utc '2025-09-04 19:13:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qfa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":502}' # _entry.id 6QFA # _exptl.entry_id 6QFA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 111.145 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description HISTAMINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QFA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 Q N N ? 5 S N N ? 5 U N N ? 5 W N N ? 5 Y N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n K NAG 1 F 1 NAG B 3000 NAG 3 n K NAG 2 F 2 NAG B 3001 NAG 3 n K BMA 3 F 3 BMA B 3002 BMA 3 n K MAN 4 F 4 MAN B 3008 MAN 3 n K MAN 5 F 5 MAN B 3003 MAN 3 n L NAG 1 G 1 NAG C 3000 NAG 3 n L NAG 2 G 2 NAG C 3001 NAG 3 n L BMA 3 G 3 BMA C 3002 BMA 3 n L MAN 4 G 4 MAN C 3008 MAN 3 n L MAN 5 G 5 MAN C 3003 MAN 3 n M NAG 1 H 1 NAG D 3000 NAG 3 n M NAG 2 H 2 NAG D 3001 NAG 3 n M BMA 3 H 3 BMA D 3002 BMA 3 n M MAN 4 H 4 MAN D 3008 MAN 3 n M MAN 5 H 5 MAN D 3003 MAN 3 n N NAG 1 I 1 NAG E 3000 NAG 3 n N NAG 2 I 2 NAG E 3001 NAG 3 n N BMA 3 I 3 BMA E 3002 BMA 3 n N MAN 4 I 4 MAN E 3008 MAN 3 n N MAN 5 I 5 MAN E 3003 MAN 3 n O NAG 1 J 1 NAG A 3000 NAG 3 n O NAG 2 J 2 NAG A 3001 NAG 3 n O BMA 3 J 3 BMA A 3002 BMA 3 n O MAN 4 J 4 MAN A 3008 MAN 3 n O MAN 5 J 5 MAN A 3003 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 B CYS 136 1_555 A SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 409 K CYS 409 1_555 B SG CYS 483 K CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 409 O CYS 409 1_555 C SG CYS 483 O CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 409 N CYS 409 1_555 D SG CYS 483 N CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 E SG CYS 409 M CYS 409 1_555 E SG CYS 483 M CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 F SG CYS 409 L CYS 409 1_555 F SG CYS 483 L CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 G SG CYS 136 C CYS 136 1_555 G SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 H SG CYS 136 D CYS 136 1_555 H SG CYS 150 D CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 I SG CYS 136 E CYS 136 1_555 I SG CYS 150 E CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 J SG CYS 136 A CYS 136 1_555 J SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 80 B ASN 80 1_555 P C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 149 B ASN 149 1_555 K C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale3 G ND2 ASN 80 C ASN 80 1_555 R C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 G ND2 ASN 149 C ASN 149 1_555 L C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale5 H ND2 ASN 80 D ASN 80 1_555 T C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 H ND2 ASN 149 D ASN 149 1_555 M C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 I ND2 ASN 80 E ASN 80 1_555 V C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 I ND2 ASN 149 E ASN 149 1_555 N C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale9 J ND2 ASN 80 A ASN 80 1_555 X C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale10 J ND2 ASN 149 A ASN 149 1_555 O C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale11 K O4 NAG . F NAG 1 1_555 K C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale12 K O4 NAG . F NAG 2 1_555 K C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale13 K O3 BMA . F BMA 3 1_555 K C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale14 K O6 BMA . F BMA 3 1_555 K C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale15 L O4 NAG . G NAG 1 1_555 L C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale16 L O4 NAG . G NAG 2 1_555 L C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale17 L O3 BMA . G BMA 3 1_555 L C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale18 L O6 BMA . G BMA 3 1_555 L C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale19 M O4 NAG . H NAG 1 1_555 M C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale20 M O4 NAG . H NAG 2 1_555 M C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale21 M O3 BMA . H BMA 3 1_555 M C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale22 M O6 BMA . H BMA 3 1_555 M C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale23 N O4 NAG . I NAG 1 1_555 N C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale24 N O4 NAG . I NAG 2 1_555 N C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale25 N O3 BMA . I BMA 3 1_555 N C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale26 N O6 BMA . I BMA 3 1_555 N C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale27 O O4 NAG . J NAG 1 1_555 O C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale28 O O4 NAG . J NAG 2 1_555 O C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale29 O O3 BMA . J BMA 3 1_555 O C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale30 O O6 BMA . J BMA 3 1_555 O C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? # _chem_comp.formula 'C5 H9 N3' _chem_comp.formula_weight 111.145 _chem_comp.id HSM _chem_comp.mon_nstd_flag . _chem_comp.name HISTAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HSM sing 174 n n N H1 HSM sing 175 n n N H2 HSM sing 176 n n CA CB HSM sing 177 n n CA HA1 HSM sing 178 n n CA HA2 HSM sing 179 n n CB CG HSM sing 180 n n CB HB1 HSM sing 181 n n CB HB2 HSM sing 182 n n CG ND1 HSM sing 183 n y CG CD2 HSM doub 184 n y ND1 CE1 HSM doub 185 n y CD2 NE2 HSM sing 186 n y CD2 HD2 HSM sing 187 n n CE1 NE2 HSM sing 188 n y CE1 HE1 HSM sing 189 n n NE2 HE2 HSM sing 190 n n # _atom_sites.entry_id 6QFA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 4 NAG B 1 501 2000 NAG NAG . Q 5 HSM B 1 502 4001 HSM HSM . R 4 NAG C 1 501 2000 NAG NAG . S 5 HSM C 1 502 4001 HSM HSM . T 4 NAG D 1 501 2000 NAG NAG . U 5 HSM D 1 502 4001 HSM HSM . V 4 NAG E 1 501 2000 NAG NAG . W 5 HSM E 1 502 4001 HSM HSM . X 4 NAG A 1 501 2000 NAG NAG . Y 5 HSM A 1 502 4001 HSM HSM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HSM . . . Q 5 130.55 161.586 111.392 1 14.49 ? N HSM 502 B 1 HETATM 2 C CA HSM . . . Q 5 131.554 162.433 112.035 1 14.49 ? CA HSM 502 B 1 HETATM 3 C CB HSM . . . Q 5 132.844 161.61 112.204 1 14.49 ? CB HSM 502 B 1 HETATM 4 C CG HSM . . . Q 5 133.85 162.422 112.957 1 14.49 ? CG HSM 502 B 1 HETATM 5 N ND1 HSM . . . Q 5 134.886 163.074 112.315 1 14.49 ? ND1 HSM 502 B 1 HETATM 6 C CD2 HSM . . . Q 5 133.938 162.653 114.293 1 14.49 ? CD2 HSM 502 B 1 HETATM 7 C CE1 HSM . . . Q 5 135.565 163.678 113.276 1 14.49 ? CE1 HSM 502 B 1 HETATM 8 N NE2 HSM . . . Q 5 135.03 163.452 114.48 1 14.49 ? NE2 HSM 502 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #