data_6QFB # _model_server_result.job_id reXFNr5GSnBUix6U3XzKoQ _model_server_result.datetime_utc '2024-11-14 14:34:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1202}' # _entry.id 6QFB # _exptl.entry_id 6QFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.27 _cell.angle_gamma 90 _cell.entry_id 6QFB _cell.length_a 214.277 _cell.length_b 215.398 _cell.length_c 158.421 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N 1 1,2 C,D,O,P,Q,R,S,T,U 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -72.586001 0 140.813656 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 203 A ASN 203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A OD2 ASP 216 A ASP 216 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 G O2B ADP . A ADP 1203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc4 G O1A ADP . A ADP 1203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 B O ASN 203 B ASN 203 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc6 B OD2 ASP 216 B ASP 216 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc7 B OG SER 308 B SER 308 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc8 I O2 2HP . B 2HP 1201 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc9 J OG2 FLC . B FLC 1202 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc10 L O1B ADP . B ADP 1204 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc11 L O2A ADP . B ADP 1204 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc12 C O ASN 203 C ASN 203 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc13 C OD2 ASP 216 C ASP 216 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc14 P O2B ADP . C ADP 1202 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc15 P O2A ADP . C ADP 1202 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc16 D O ASN 203 D ASN 203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc17 D OD2 ASP 216 D ASP 216 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc18 T O1B ADP . D ADP 1203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc19 T O2A ADP . D ADP 1203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 219 n n CAC OA1 FLC doub 220 n n CAC OA2 FLC sing 221 n n CA CB FLC sing 222 n n CA HA1 FLC sing 223 n n CA HA2 FLC sing 224 n n CB CBC FLC sing 225 n n CB CG FLC sing 226 n n CB OHB FLC sing 227 n n CBC OB1 FLC doub 228 n n CBC OB2 FLC sing 229 n n CG CGC FLC sing 230 n n CG HG1 FLC sing 231 n n CG HG2 FLC sing 232 n n CGC OG1 FLC doub 233 n n CGC OG2 FLC sing 234 n n OHB HOB FLC sing 235 n n # _atom_sites.entry_id 6QFB _atom_sites.fract_transf_matrix[1][1] 0.004667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002406 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2HP A 1 1201 1108 2HP 2HP . F 3 COA A 1 1202 1110 COA COA . G 4 ADP A 1 1203 1111 ADP ADP . H 5 MG A 1 1204 1112 MG MG . I 2 2HP B 1 1201 1108 2HP 2HP . J 6 FLC B 1 1202 1109 FLC FLC . K 3 COA B 1 1203 1110 COA COA . L 4 ADP B 1 1204 1111 ADP ADP . M 5 MG B 1 1205 1112 MG MG . N 5 MG B 1 1206 1113 MG MG . O 3 COA C 1 1201 1110 COA COA . P 4 ADP C 1 1202 1111 ADP ADP . Q 5 MG C 1 1203 1112 MG MG . R 2 2HP D 1 1201 1108 2HP 2HP . S 3 COA D 1 1202 1110 COA COA . T 4 ADP D 1 1203 1111 ADP ADP . U 5 MG D 1 1204 1112 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . J 6 1.078 -122.578 47.448 1 137.68 ? CAC FLC 1202 B 1 HETATM 2 C CA FLC . . . J 6 0.564 -121.224 46.969 1 135.39 ? CA FLC 1202 B 1 HETATM 3 C CB FLC . . . J 6 0.141 -121.127 45.494 1 131.01 ? CB FLC 1202 B 1 HETATM 4 C CBC FLC . . . J 6 -1.096 -122.018 45.234 1 125.9 ? CBC FLC 1202 B 1 HETATM 5 C CG FLC . . . J 6 -0.171 -119.664 45.149 1 132.12 ? CG FLC 1202 B 1 HETATM 6 C CGC FLC . . . J 6 1.051 -118.803 44.852 1 134.22 ? CGC FLC 1202 B 1 HETATM 7 O OA1 FLC . . . J 6 1.9 -123.179 46.709 1 139.56 ? OA1 FLC 1202 B 1 HETATM 8 O OA2 FLC . . . J 6 0.672 -123.009 48.562 1 136.43 ? OA2 FLC 1202 B 1 HETATM 9 O OB1 FLC . . . J 6 -0.987 -122.948 44.405 1 123.02 ? OB1 FLC 1202 B 1 HETATM 10 O OB2 FLC . . . J 6 -2.139 -121.758 45.887 1 124.82 ? OB2 FLC 1202 B 1 HETATM 11 O OG1 FLC . . . J 6 1.356 -118.603 43.658 1 135.54 ? OG1 FLC 1202 B 1 HETATM 12 O OG2 FLC . . . J 6 1.696 -118.352 45.811 1 134.14 ? OG2 FLC 1202 B 1 HETATM 13 O OHB FLC . . . J 6 1.246 -121.536 44.68 1 130.93 ? OHB FLC 1202 B 1 # _model_server_stats.io_time_ms 262 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 275 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #