data_6QFB
#
_model_server_result.job_id            s42KM4jfK-b-p3xkfvfPBw 
_model_server_result.datetime_utc      '2024-11-14 14:39:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qfb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1202}' 
#
_entry.id    6QFB 
#
_exptl.entry_id    6QFB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.27 
_cell.angle_gamma         90 
_cell.entry_id            6QFB 
_cell.length_a            214.277 
_cell.length_b            215.398 
_cell.length_c            158.421 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QFB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N 1 1,2 
C,D,O,P,Q,R,S,T,U 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -72.586001 0 140.813656 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 L N N 
? 4 P N N 
? 4 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASN 203 A ASN 203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc2 A OD2 ASP 216 A ASP 216 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc3 G O2B ADP . A ADP 1203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
metalc ? metalc4 G O1A ADP . A ADP 1203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc5 B O ASN 203 B ASN 203 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc6 B OD2 ASP 216 B ASP 216 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc7 B OG SER 308 B SER 308 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc8 I O2 2HP . B 2HP 1201 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc9 J OG2 FLC . B FLC 1202 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? 
metalc ? metalc10 L O1B ADP . B ADP 1204 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc11 L O2A ADP . B ADP 1204 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc12 C O ASN 203 C ASN 203 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc13 C OD2 ASP 216 C ASP 216 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? 
metalc ? metalc14 P O2B ADP . C ADP 1202 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc15 P O2A ADP . C ADP 1202 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc16 D O ASN 203 D ASN 203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc17 D OD2 ASP 216 D ASP 216 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? 
metalc ? metalc18 T O1B ADP . D ADP 1203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? 
metalc ? metalc19 T O2A ADP . D ADP 1203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 7 n n 
PB O2B ADP sing 8 n n 
PB O3B ADP sing 9 n n 
PB O3A ADP sing 10 n n 
O2B HOB2 ADP sing 11 n n 
O3B HOB3 ADP sing 12 n n 
PA O1A ADP doub 13 n n 
PA O2A ADP sing 14 n n 
PA O3A ADP sing 15 n n 
PA O5' ADP sing 16 n n 
O2A HOA2 ADP sing 17 n n 
O5' C5' ADP sing 18 n n 
C5' C4' ADP sing 19 n n 
C5' "H5'1" ADP sing 20 n n 
C5' "H5'2" ADP sing 21 n n 
C4' O4' ADP sing 22 n n 
C4' C3' ADP sing 23 n n 
C4' H4' ADP sing 24 n n 
O4' C1' ADP sing 25 n n 
C3' O3' ADP sing 26 n n 
C3' C2' ADP sing 27 n n 
C3' H3' ADP sing 28 n n 
O3' HO3' ADP sing 29 n n 
C2' O2' ADP sing 30 n n 
C2' C1' ADP sing 31 n n 
C2' H2' ADP sing 32 n n 
O2' HO2' ADP sing 33 n n 
C1' N9 ADP sing 34 n n 
C1' H1' ADP sing 35 n n 
N9 C8 ADP sing 36 n y 
N9 C4 ADP sing 37 n y 
C8 N7 ADP doub 38 n y 
C8 H8 ADP sing 39 n n 
N7 C5 ADP sing 40 n y 
C5 C6 ADP sing 41 n y 
C5 C4 ADP doub 42 n y 
C6 N6 ADP sing 43 n n 
C6 N1 ADP doub 44 n y 
N6 HN61 ADP sing 45 n n 
N6 HN62 ADP sing 46 n n 
N1 C2 ADP sing 47 n y 
C2 N3 ADP doub 48 n y 
C2 H2 ADP sing 49 n n 
N3 C4 ADP sing 50 n y 
#
_atom_sites.entry_id                     6QFB 
_atom_sites.fract_transf_matrix[1][1]    0.004667 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002406 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004643 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 2HP A 1 1201 1108 2HP 2HP . 
F 3 COA A 1 1202 1110 COA COA . 
G 4 ADP A 1 1203 1111 ADP ADP . 
H 5 MG A 1 1204 1112 MG MG . 
I 2 2HP B 1 1201 1108 2HP 2HP . 
J 6 FLC B 1 1202 1109 FLC FLC . 
K 3 COA B 1 1203 1110 COA COA . 
L 4 ADP B 1 1204 1111 ADP ADP . 
M 5 MG B 1 1205 1112 MG MG . 
N 5 MG B 1 1206 1113 MG MG . 
O 3 COA C 1 1201 1110 COA COA . 
P 4 ADP C 1 1202 1111 ADP ADP . 
Q 5 MG C 1 1203 1112 MG MG . 
R 2 2HP D 1 1201 1108 2HP 2HP . 
S 3 COA D 1 1202 1110 COA COA . 
T 4 ADP D 1 1203 1111 ADP ADP . 
U 5 MG D 1 1204 1112 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . P 4 3.848 -95.015 126.943 1 147.48 ? PB ADP 1202 C 1 
HETATM 2 O O1B ADP . . . P 4 2.478 -94.621 126.584 1 145.2 ? O1B ADP 1202 C 1 
HETATM 3 O O2B ADP . . . P 4 4.747 -93.82 127.38 1 148.08 -1 O2B ADP 1202 C 1 
HETATM 4 O O3B ADP . . . P 4 3.899 -96.066 128.067 1 149.18 ? O3B ADP 1202 C 1 
HETATM 5 P PA ADP . . . P 4 6.046 -95.584 125.132 1 148.32 ? PA ADP 1202 C 1 
HETATM 6 O O1A ADP . . . P 4 6.002 -95.293 123.644 1 148.28 ? O1A ADP 1202 C 1 
HETATM 7 O O2A ADP . . . P 4 6.842 -94.549 125.841 1 149.36 -1 O2A ADP 1202 C 1 
HETATM 8 O O3A ADP . . . P 4 4.551 -95.664 125.672 1 146.54 ? O3A ADP 1202 C 1 
HETATM 9 O O5' ADP . . . P 4 6.612 -97.065 125.303 1 149.19 ? O5' ADP 1202 C 1 
HETATM 10 C C5' ADP . . . P 4 6.967 -97.609 126.591 1 149.03 ? C5' ADP 1202 C 1 
HETATM 11 C C4' ADP . . . P 4 8.447 -97.905 126.647 1 147.66 ? C4' ADP 1202 C 1 
HETATM 12 O O4' ADP . . . P 4 8.774 -98.927 125.679 1 149.04 ? O4' ADP 1202 C 1 
HETATM 13 C C3' ADP . . . P 4 9.37 -96.738 126.324 1 144.9 ? C3' ADP 1202 C 1 
HETATM 14 O O3' ADP . . . P 4 9.608 -95.918 127.461 1 142.51 ? O3' ADP 1202 C 1 
HETATM 15 C C2' ADP . . . P 4 10.628 -97.439 125.806 1 146.45 ? C2' ADP 1202 C 1 
HETATM 16 O O2' ADP . . . P 4 11.498 -97.794 126.874 1 147.24 ? O2' ADP 1202 C 1 
HETATM 17 C C1' ADP . . . P 4 10.06 -98.699 125.13 1 148.52 ? C1' ADP 1202 C 1 
HETATM 18 N N9 ADP . . . P 4 9.945 -98.647 123.671 1 150.81 ? N9 ADP 1202 C 1 
HETATM 19 C C8 ADP . . . P 4 8.842 -98.268 122.945 1 151.98 ? C8 ADP 1202 C 1 
HETATM 20 N N7 ADP . . . P 4 9.015 -98.3 121.646 1 152.28 ? N7 ADP 1202 C 1 
HETATM 21 C C5 ADP . . . P 4 10.325 -98.729 121.499 1 152.43 ? C5 ADP 1202 C 1 
HETATM 22 C C6 ADP . . . P 4 11.136 -98.945 120.36 1 151.73 ? C6 ADP 1202 C 1 
HETATM 23 N N6 ADP . . . P 4 10.727 -98.733 119.1 1 150.49 ? N6 ADP 1202 C 1 
HETATM 24 N N1 ADP . . . P 4 12.4 -99.387 120.566 1 151.23 ? N1 ADP 1202 C 1 
HETATM 25 C C2 ADP . . . P 4 12.818 -99.59 121.822 1 150.54 ? C2 ADP 1202 C 1 
HETATM 26 N N3 ADP . . . P 4 12.154 -99.404 122.971 1 149.69 ? N3 ADP 1202 C 1 
HETATM 27 C C4 ADP . . . P 4 10.908 -98.963 122.739 1 151.08 ? C4 ADP 1202 C 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           208 
_model_server_stats.create_model_time_ms    236 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           27 
#