data_6QFB # _model_server_result.job_id MpkUH8Oh7dwVEGx3fd7-OQ _model_server_result.datetime_utc '2024-11-14 14:49:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1202}' # _entry.id 6QFB # _exptl.entry_id 6QFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.27 _cell.angle_gamma 90 _cell.entry_id 6QFB _cell.length_a 214.277 _cell.length_b 215.398 _cell.length_c 158.421 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N 1 1,2 C,D,O,P,Q,R,S,T,U 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -72.586001 0 140.813656 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 O N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 203 A ASN 203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A OD2 ASP 216 A ASP 216 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 G O2B ADP . A ADP 1203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? metalc ? metalc4 G O1A ADP . A ADP 1203 1_555 H MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 B O ASN 203 B ASN 203 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc6 B OD2 ASP 216 B ASP 216 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc7 B OG SER 308 B SER 308 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc8 I O2 2HP . B 2HP 1201 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc9 J OG2 FLC . B FLC 1202 1_555 N MG MG . B MG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc10 L O1B ADP . B ADP 1204 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc11 L O2A ADP . B ADP 1204 1_555 M MG MG . B MG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc12 C O ASN 203 C ASN 203 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc13 C OD2 ASP 216 C ASP 216 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc14 P O2B ADP . C ADP 1202 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc15 P O2A ADP . C ADP 1202 1_555 Q MG MG . C MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc16 D O ASN 203 D ASN 203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc17 D OD2 ASP 216 D ASP 216 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc18 T O1B ADP . D ADP 1203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc19 T O2A ADP . D ADP 1203 1_555 U MG MG . D MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 120 n y N1A C6A COA doub 121 n y C2A N3A COA doub 122 n y C2A H2A COA sing 123 n n N3A C4A COA sing 124 n y C4A C5A COA doub 125 n y C4A N9A COA sing 126 n y C5A C6A COA sing 127 n y C5A N7A COA sing 128 n y C6A N6A COA sing 129 n n N6A H61A COA sing 130 n n N6A H62A COA sing 131 n n N7A C8A COA doub 132 n y C8A N9A COA sing 133 n y C8A H8A COA sing 134 n n N9A C1B COA sing 135 n n C1B C2B COA sing 136 n n C1B O4B COA sing 137 n n C1B H1B COA sing 138 n n C2B O2B COA sing 139 n n C2B C3B COA sing 140 n n C2B H2B COA sing 141 n n O2B HO2A COA sing 142 n n C3B O3B COA sing 143 n n C3B C4B COA sing 144 n n C3B H3B COA sing 145 n n O3B P3B COA sing 146 n n P3B O7A COA doub 147 n n P3B O8A COA sing 148 n n P3B O9A COA sing 149 n n O8A HOA8 COA sing 150 n n O9A HOA9 COA sing 151 n n C4B O4B COA sing 152 n n C4B C5B COA sing 153 n n C4B H4B COA sing 154 n n C5B O5B COA sing 155 n n C5B H51A COA sing 156 n n C5B H52A COA sing 157 n n O5B P1A COA sing 158 n n P1A O1A COA doub 159 n n P1A O2A COA sing 160 n n P1A O3A COA sing 161 n n O2A HOA2 COA sing 162 n n O3A P2A COA sing 163 n n P2A O4A COA doub 164 n n P2A O5A COA sing 165 n n P2A O6A COA sing 166 n n O5A HOA5 COA sing 167 n n O6A CCP COA sing 168 n n CBP CCP COA sing 169 n n CBP CDP COA sing 170 n n CBP CEP COA sing 171 n n CBP CAP COA sing 172 n n CCP H121 COA sing 173 n n CCP H122 COA sing 174 n n CDP H131 COA sing 175 n n CDP H132 COA sing 176 n n CDP H133 COA sing 177 n n CEP H141 COA sing 178 n n CEP H142 COA sing 179 n n CEP H143 COA sing 180 n n CAP OAP COA sing 181 n n CAP C9P COA sing 182 n n CAP H10 COA sing 183 n n OAP HO1 COA sing 184 n n C9P O9P COA doub 185 n n C9P N8P COA sing 186 n n N8P C7P COA sing 187 n n N8P HN8 COA sing 188 n n C7P C6P COA sing 189 n n C7P H71 COA sing 190 n n C7P H72 COA sing 191 n n C6P C5P COA sing 192 n n C6P H61 COA sing 193 n n C6P H62 COA sing 194 n n C5P O5P COA doub 195 n n C5P N4P COA sing 196 n n N4P C3P COA sing 197 n n N4P HN4 COA sing 198 n n C3P C2P COA sing 199 n n C3P H31 COA sing 200 n n C3P H32 COA sing 201 n n C2P S1P COA sing 202 n n C2P H21 COA sing 203 n n C2P H22 COA sing 204 n n S1P HS1 COA sing 205 n n # _atom_sites.entry_id 6QFB _atom_sites.fract_transf_matrix[1][1] 0.004667 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002406 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 2HP A 1 1201 1108 2HP 2HP . F 3 COA A 1 1202 1110 COA COA . G 4 ADP A 1 1203 1111 ADP ADP . H 5 MG A 1 1204 1112 MG MG . I 2 2HP B 1 1201 1108 2HP 2HP . J 6 FLC B 1 1202 1109 FLC FLC . K 3 COA B 1 1203 1110 COA COA . L 4 ADP B 1 1204 1111 ADP ADP . M 5 MG B 1 1205 1112 MG MG . N 5 MG B 1 1206 1113 MG MG . O 3 COA C 1 1201 1110 COA COA . P 4 ADP C 1 1202 1111 ADP ADP . Q 5 MG C 1 1203 1112 MG MG . R 2 2HP D 1 1201 1108 2HP 2HP . S 3 COA D 1 1202 1110 COA COA . T 4 ADP D 1 1203 1111 ADP ADP . U 5 MG D 1 1204 1112 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . S 3 -7.181 -38.108 60.725 1 132.96 ? N1A COA 1202 D 1 HETATM 2 C C2A COA . . . S 3 -5.849 -37.988 60.66 1 132.66 ? C2A COA 1202 D 1 HETATM 3 N N3A COA . . . S 3 -5.036 -38.196 59.616 1 132.12 ? N3A COA 1202 D 1 HETATM 4 C C4A COA . . . S 3 -5.725 -38.592 58.532 1 131.46 ? C4A COA 1202 D 1 HETATM 5 C C5A COA . . . S 3 -7.098 -38.755 58.444 1 134.12 ? C5A COA 1202 D 1 HETATM 6 C C6A COA . . . S 3 -7.854 -38.478 59.609 1 136.32 ? C6A COA 1202 D 1 HETATM 7 N N6A COA . . . S 3 -9.187 -38.529 59.661 1 140.05 ? N6A COA 1202 D 1 HETATM 8 N N7A COA . . . S 3 -7.457 -39.215 57.184 1 132.77 ? N7A COA 1202 D 1 HETATM 9 C C8A COA . . . S 3 -6.311 -39.318 56.552 1 130.14 ? C8A COA 1202 D 1 HETATM 10 N N9A COA . . . S 3 -5.225 -38.954 57.304 1 129.36 ? N9A COA 1202 D 1 HETATM 11 C C1B COA . . . S 3 -3.83 -38.926 56.878 1 129.95 ? C1B COA 1202 D 1 HETATM 12 C C2B COA . . . S 3 -3.189 -40.283 56.623 1 129.69 ? C2B COA 1202 D 1 HETATM 13 O O2B COA . . . S 3 -2.718 -40.823 57.85 1 130.24 ? O2B COA 1202 D 1 HETATM 14 C C3B COA . . . S 3 -2.003 -39.879 55.747 1 131.58 ? C3B COA 1202 D 1 HETATM 15 O O3B COA . . . S 3 -0.875 -39.535 56.577 1 133.71 ? O3B COA 1202 D 1 HETATM 16 P P3B COA . . . S 3 0.648 -39.57 56.115 1 133.53 ? P3B COA 1202 D 1 HETATM 17 O O7A COA . . . S 3 0.794 -38.701 54.911 1 130.84 -1 O7A COA 1202 D 1 HETATM 18 O O8A COA . . . S 3 1.5 -39.095 57.309 1 130.73 -1 O8A COA 1202 D 1 HETATM 19 O O9A COA . . . S 3 0.859 -41.066 55.856 1 136.83 ? O9A COA 1202 D 1 HETATM 20 C C4B COA . . . S 3 -2.455 -38.575 55.073 1 135.22 ? C4B COA 1202 D 1 HETATM 21 O O4B COA . . . S 3 -3.732 -38.241 55.654 1 131.66 ? O4B COA 1202 D 1 HETATM 22 C C5B COA . . . S 3 -2.571 -38.642 53.572 1 144.45 ? C5B COA 1202 D 1 HETATM 23 O O5B COA . . . S 3 -3.432 -39.758 53.247 1 153.01 ? O5B COA 1202 D 1 HETATM 24 P P1A COA . . . S 3 -3.014 -40.893 52.171 1 158.93 ? P1A COA 1202 D 1 HETATM 25 O O1A COA . . . S 3 -4.216 -41.591 51.632 1 160.57 -1 O1A COA 1202 D 1 HETATM 26 O O2A COA . . . S 3 -1.946 -41.842 52.767 1 157.32 ? O2A COA 1202 D 1 HETATM 27 O O3A COA . . . S 3 -2.266 -40.107 51.008 1 161.79 ? O3A COA 1202 D 1 HETATM 28 P P2A COA . . . S 3 -2.747 -39.384 49.674 1 161.58 ? P2A COA 1202 D 1 HETATM 29 O O4A COA . . . S 3 -4.13 -39.825 49.346 1 163.47 -1 O4A COA 1202 D 1 HETATM 30 O O5A COA . . . S 3 -2.674 -37.84 49.867 1 160.83 ? O5A COA 1202 D 1 HETATM 31 O O6A COA . . . S 3 -1.484 -39.858 48.753 1 154.67 ? O6A COA 1202 D 1 HETATM 32 C CBP COA . . . S 3 -0.589 -41.12 46.861 1 147.26 ? CBP COA 1202 D 1 HETATM 33 C CCP COA . . . S 3 -1.405 -41.171 48.158 1 149.47 ? CCP COA 1202 D 1 HETATM 34 C CDP COA . . . S 3 0.901 -40.958 47.169 1 144.77 ? CDP COA 1202 D 1 HETATM 35 C CEP COA . . . S 3 -0.79 -42.461 46.149 1 146.58 ? CEP COA 1202 D 1 HETATM 36 C CAP COA . . . S 3 -1.097 -39.956 45.966 1 151.87 ? CAP COA 1202 D 1 HETATM 37 O OAP COA . . . S 3 -0.821 -38.665 46.501 1 154.15 ? OAP COA 1202 D 1 HETATM 38 C C9P COA . . . S 3 -0.688 -39.934 44.498 1 151.63 ? C9P COA 1202 D 1 HETATM 39 O O9P COA . . . S 3 -1.351 -40.561 43.666 1 153.22 ? O9P COA 1202 D 1 HETATM 40 N N8P COA . . . S 3 0.344 -39.131 44.169 1 146.53 ? N8P COA 1202 D 1 HETATM 41 C C7P COA . . . S 3 0.701 -38.8 42.795 1 140.54 ? C7P COA 1202 D 1 HETATM 42 C C6P COA . . . S 3 2.174 -38.993 42.532 1 137.07 ? C6P COA 1202 D 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 42 #