data_6QFU # _model_server_result.job_id dNOjSncxGHjn2sLf4IrHrQ _model_server_result.datetime_utc '2024-11-15 00:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qfu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6QFU # _exptl.entry_id 6QFU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 683.24 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4-[2-(9-chloranyl-2',3',4',5',6'-pentamethyl-4-oxidanyl-7-oxidanylidene-spiro[1$l^{4},8-diaza-9$l^{8}-iridabicyclo[4.3.0]nona-1(6),2,4-triene-9,1'-1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane]-8-yl)ethyl]benzenesulfonamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.27 _cell.angle_gamma 90 _cell.entry_id 6QFU _cell.length_a 42.038 _cell.length_b 41.264 _cell.length_c 71.9 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 B N3 J0K . A J0K 301 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? # _chem_comp.formula 'C24 H29 Cl Ir N3 O4 S' _chem_comp.formula_weight 683.24 _chem_comp.id J0K _chem_comp.mon_nstd_flag . _chem_comp.name "4-[2-(9-chloranyl-2',3',4',5',6'-pentamethyl-4-oxidanyl-7-oxidanylidene-spiro[1$l^{4},8-diaza-9$l^{8}-iridabicyclo[4.3.0]nona-1(6),2,4-triene-9,1'-1$l^{8}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2,6}]hexane]-8-yl)ethyl]benzenesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C5 J0K doub 173 n y N1 IR1 J0K sing 174 n n N1 C1 J0K sing 175 n y C2 C1 J0K doub 176 n y C2 C3 J0K sing 177 n y N3 S1 J0K sing 178 n n C4 C5 J0K sing 179 n y C4 C3 J0K doub 180 n y C5 C6 J0K sing 181 n n C6 N2 J0K sing 182 n n C6 O3 J0K doub 183 n n O1 S1 J0K doub 184 n n C13 C14 J0K sing 185 n n C13 C22 J0K sing 186 n n C13 C17 J0K sing 187 n n C13 IR1 J0K sing 188 n n C14 C21 J0K sing 189 n n C14 C15 J0K sing 190 n n C14 IR1 J0K sing 191 n n C15 C20 J0K sing 192 n n C15 C16 J0K sing 193 n n C15 IR1 J0K sing 194 n n C16 C19 J0K sing 195 n n C16 C17 J0K sing 196 n n C16 IR1 J0K sing 197 n n C17 C18 J0K sing 198 n n C17 IR1 J0K sing 199 n n IR1 N2 J0K sing 200 n n O5 C3 J0K sing 201 n n S1 C10 J0K sing 202 n n S1 O2 J0K doub 203 n n C10 C11 J0K doub 204 n y C10 C9 J0K sing 205 n y C11 C12 J0K sing 206 n y C12 C7 J0K doub 207 n y C9 C8 J0K doub 208 n y C8 C7 J0K sing 209 n y C23 C24 J0K sing 210 n n C23 N2 J0K sing 211 n n C24 C7 J0K sing 212 n n IR1 CL1 J0K sing 213 n n C2 H1 J0K sing 214 n n N3 H2 J0K sing 215 n n N3 H3 J0K sing 216 n n C4 H4 J0K sing 217 n n C21 H5 J0K sing 218 n n C21 H6 J0K sing 219 n n C21 H7 J0K sing 220 n n C20 H8 J0K sing 221 n n C20 H9 J0K sing 222 n n C20 H10 J0K sing 223 n n C19 H11 J0K sing 224 n n C19 H12 J0K sing 225 n n C19 H13 J0K sing 226 n n C22 H14 J0K sing 227 n n C22 H15 J0K sing 228 n n C22 H16 J0K sing 229 n n C18 H17 J0K sing 230 n n C18 H18 J0K sing 231 n n C18 H19 J0K sing 232 n n C1 H20 J0K sing 233 n n O5 H21 J0K sing 234 n n C11 H22 J0K sing 235 n n C12 H23 J0K sing 236 n n C9 H24 J0K sing 237 n n C8 H25 J0K sing 238 n n C23 H26 J0K sing 239 n n C23 H27 J0K sing 240 n n C24 H28 J0K sing 241 n n C24 H29 J0K sing 242 n n # _atom_sites.entry_id 6QFU _atom_sites.fract_transf_matrix[1][1] 0.023788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J0K A 1 301 301 J0K JR2 . C 3 ZN A 1 302 401 ZN ZN . D 4 SO4 A 1 303 1 SO4 SO4 . E 5 HOH A 1 401 71 HOH HOH . E 5 HOH A 2 402 75 HOH HOH . E 5 HOH A 3 403 138 HOH HOH . E 5 HOH A 4 404 65 HOH HOH . E 5 HOH A 5 405 101 HOH HOH . E 5 HOH A 6 406 120 HOH HOH . E 5 HOH A 7 407 136 HOH HOH . E 5 HOH A 8 408 56 HOH HOH . E 5 HOH A 9 409 134 HOH HOH . E 5 HOH A 10 410 78 HOH HOH . E 5 HOH A 11 411 5 HOH HOH . E 5 HOH A 12 412 152 HOH HOH . E 5 HOH A 13 413 114 HOH HOH . E 5 HOH A 14 414 24 HOH HOH . E 5 HOH A 15 415 87 HOH HOH . E 5 HOH A 16 416 104 HOH HOH . E 5 HOH A 17 417 60 HOH HOH . E 5 HOH A 18 418 48 HOH HOH . E 5 HOH A 19 419 22 HOH HOH . E 5 HOH A 20 420 57 HOH HOH . E 5 HOH A 21 421 118 HOH HOH . E 5 HOH A 22 422 59 HOH HOH . E 5 HOH A 23 423 79 HOH HOH . E 5 HOH A 24 424 82 HOH HOH . E 5 HOH A 25 425 149 HOH HOH . E 5 HOH A 26 426 130 HOH HOH . E 5 HOH A 27 427 53 HOH HOH . E 5 HOH A 28 428 81 HOH HOH . E 5 HOH A 29 429 30 HOH HOH . E 5 HOH A 30 430 39 HOH HOH . E 5 HOH A 31 431 27 HOH HOH . E 5 HOH A 32 432 10 HOH HOH . E 5 HOH A 33 433 145 HOH HOH . E 5 HOH A 34 434 23 HOH HOH . E 5 HOH A 35 435 50 HOH HOH . E 5 HOH A 36 436 90 HOH HOH . E 5 HOH A 37 437 68 HOH HOH . E 5 HOH A 38 438 33 HOH HOH . E 5 HOH A 39 439 107 HOH HOH . E 5 HOH A 40 440 72 HOH HOH . E 5 HOH A 41 441 112 HOH HOH . E 5 HOH A 42 442 143 HOH HOH . E 5 HOH A 43 443 106 HOH HOH . E 5 HOH A 44 444 6 HOH HOH . E 5 HOH A 45 445 44 HOH HOH . E 5 HOH A 46 446 32 HOH HOH . E 5 HOH A 47 447 144 HOH HOH . E 5 HOH A 48 448 83 HOH HOH . E 5 HOH A 49 449 126 HOH HOH . E 5 HOH A 50 450 29 HOH HOH . E 5 HOH A 51 451 105 HOH HOH . E 5 HOH A 52 452 103 HOH HOH . E 5 HOH A 53 453 11 HOH HOH . E 5 HOH A 54 454 102 HOH HOH . E 5 HOH A 55 455 84 HOH HOH . E 5 HOH A 56 456 21 HOH HOH . E 5 HOH A 57 457 129 HOH HOH . E 5 HOH A 58 458 1 HOH HOH . E 5 HOH A 59 459 31 HOH HOH . E 5 HOH A 60 460 69 HOH HOH . E 5 HOH A 61 461 7 HOH HOH . E 5 HOH A 62 462 73 HOH HOH . E 5 HOH A 63 463 18 HOH HOH . E 5 HOH A 64 464 85 HOH HOH . E 5 HOH A 65 465 119 HOH HOH . E 5 HOH A 66 466 89 HOH HOH . E 5 HOH A 67 467 98 HOH HOH . E 5 HOH A 68 468 20 HOH HOH . E 5 HOH A 69 469 8 HOH HOH . E 5 HOH A 70 470 62 HOH HOH . E 5 HOH A 71 471 67 HOH HOH . E 5 HOH A 72 472 4 HOH HOH . E 5 HOH A 73 473 124 HOH HOH . E 5 HOH A 74 474 63 HOH HOH . E 5 HOH A 75 475 115 HOH HOH . E 5 HOH A 76 476 123 HOH HOH . E 5 HOH A 77 477 13 HOH HOH . E 5 HOH A 78 478 28 HOH HOH . E 5 HOH A 79 479 3 HOH HOH . E 5 HOH A 80 480 96 HOH HOH . E 5 HOH A 81 481 9 HOH HOH . E 5 HOH A 82 482 86 HOH HOH . E 5 HOH A 83 483 140 HOH HOH . E 5 HOH A 84 484 121 HOH HOH . E 5 HOH A 85 485 135 HOH HOH . E 5 HOH A 86 486 52 HOH HOH . E 5 HOH A 87 487 25 HOH HOH . E 5 HOH A 88 488 92 HOH HOH . E 5 HOH A 89 489 133 HOH HOH . E 5 HOH A 90 490 17 HOH HOH . E 5 HOH A 91 491 132 HOH HOH . E 5 HOH A 92 492 34 HOH HOH . E 5 HOH A 93 493 54 HOH HOH . E 5 HOH A 94 494 155 HOH HOH . E 5 HOH A 95 495 141 HOH HOH . E 5 HOH A 96 496 110 HOH HOH . E 5 HOH A 97 497 26 HOH HOH . E 5 HOH A 98 498 2 HOH HOH . E 5 HOH A 99 499 14 HOH HOH . E 5 HOH A 100 500 51 HOH HOH . E 5 HOH A 101 501 80 HOH HOH . E 5 HOH A 102 502 43 HOH HOH . E 5 HOH A 103 503 45 HOH HOH . E 5 HOH A 104 504 46 HOH HOH . E 5 HOH A 105 505 36 HOH HOH . E 5 HOH A 106 506 12 HOH HOH . E 5 HOH A 107 507 76 HOH HOH . E 5 HOH A 108 508 55 HOH HOH . E 5 HOH A 109 509 41 HOH HOH . E 5 HOH A 110 510 58 HOH HOH . E 5 HOH A 111 511 153 HOH HOH . E 5 HOH A 112 512 131 HOH HOH . E 5 HOH A 113 513 108 HOH HOH . E 5 HOH A 114 514 117 HOH HOH . E 5 HOH A 115 515 94 HOH HOH . E 5 HOH A 116 516 61 HOH HOH . E 5 HOH A 117 517 128 HOH HOH . E 5 HOH A 118 518 19 HOH HOH . E 5 HOH A 119 519 16 HOH HOH . E 5 HOH A 120 520 100 HOH HOH . E 5 HOH A 121 521 154 HOH HOH . E 5 HOH A 122 522 64 HOH HOH . E 5 HOH A 123 523 113 HOH HOH . E 5 HOH A 124 524 38 HOH HOH . E 5 HOH A 125 525 116 HOH HOH . E 5 HOH A 126 526 35 HOH HOH . E 5 HOH A 127 527 127 HOH HOH . E 5 HOH A 128 528 146 HOH HOH . E 5 HOH A 129 529 95 HOH HOH . E 5 HOH A 130 530 15 HOH HOH . E 5 HOH A 131 531 97 HOH HOH . E 5 HOH A 132 532 42 HOH HOH . E 5 HOH A 133 533 137 HOH HOH . E 5 HOH A 134 534 142 HOH HOH . E 5 HOH A 135 535 109 HOH HOH . E 5 HOH A 136 536 122 HOH HOH . E 5 HOH A 137 537 40 HOH HOH . E 5 HOH A 138 538 74 HOH HOH . E 5 HOH A 139 539 77 HOH HOH . E 5 HOH A 140 540 88 HOH HOH . E 5 HOH A 141 541 150 HOH HOH . E 5 HOH A 142 542 47 HOH HOH . E 5 HOH A 143 543 91 HOH HOH . E 5 HOH A 144 544 49 HOH HOH . E 5 HOH A 145 545 156 HOH HOH . E 5 HOH A 146 546 148 HOH HOH . E 5 HOH A 147 547 111 HOH HOH . E 5 HOH A 148 548 66 HOH HOH . E 5 HOH A 149 549 99 HOH HOH . E 5 HOH A 150 550 70 HOH HOH . E 5 HOH A 151 551 139 HOH HOH . E 5 HOH A 152 552 37 HOH HOH . E 5 HOH A 153 553 151 HOH HOH . E 5 HOH A 154 554 125 HOH HOH . E 5 HOH A 155 555 147 HOH HOH . E 5 HOH A 156 556 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J0K . . . B 2 17.098 8.491 10.4 1 37.89 ? N1 J0K 301 A 1 HETATM 2 C C2 J0K . . . B 2 15.951 10.047 9.019 1 52.7 ? C2 J0K 301 A 1 HETATM 3 N N3 J0K . . . B 2 15.779 -1.104 16.191 1 8.93 ? N3 J0K 301 A 1 HETATM 4 C C4 J0K . . . B 2 14.705 8.126 9.467 1 46.05 ? C4 J0K 301 A 1 HETATM 5 C C5 J0K . . . B 2 15.902 7.649 10.286 1 41.85 ? C5 J0K 301 A 1 HETATM 6 C C6 J0K . . . B 2 15.988 6.389 11.045 1 33.42 ? C6 J0K 301 A 1 HETATM 7 O O1 J0K . . . B 2 15.856 0.334 18.161 1 10.6 ? O1 J0K 301 A 1 HETATM 8 C C13 J0K . . . B 2 20.377 7.125 12.385 0.6 30.34 ? C13 J0K 301 A 1 HETATM 9 C C14 J0K . . . B 2 20.609 8.073 11.198 0.6 29.1 ? C14 J0K 301 A 1 HETATM 10 C C21 J0K . . . B 2 21.419 7.805 9.905 0.6 30.51 ? C21 J0K 301 A 1 HETATM 11 C C15 J0K . . . B 2 19.9 9.386 11.543 0.6 28.91 ? C15 J0K 301 A 1 HETATM 12 C C20 J0K . . . B 2 19.887 10.654 10.688 0.6 29.74 ? C20 J0K 301 A 1 HETATM 13 C C16 J0K . . . B 2 19.223 9.229 12.886 0.6 27.14 ? C16 J0K 301 A 1 HETATM 14 C C19 J0K . . . B 2 18.454 10.289 13.646 0.6 28.03 ? C19 J0K 301 A 1 HETATM 15 C C22 J0K . . . B 2 20.868 5.671 12.516 0.6 29.88 ? C22 J0K 301 A 1 HETATM 16 C C17 J0K . . . B 2 19.509 7.861 13.409 0.6 26.72 ? C17 J0K 301 A 1 HETATM 17 C C18 J0K . . . B 2 19.075 7.302 14.734 0.6 24.41 ? C18 J0K 301 A 1 HETATM 18 IR IR1 J0K . . . B 2 18.56 7.738 11.539 0.6 20.68 ? IR1 J0K 301 A 1 HETATM 19 CL CL1 J0K . . . B 2 19.262 5.938 10.113 0.6 38.92 ? CL1 J0K 301 A 1 HETATM 20 C C1 J0K . . . B 2 17.033 9.625 9.756 1 46.41 ? C1 J0K 301 A 1 HETATM 21 O O5 J0K . . . B 2 13.782 9.752 8.102 1 48.44 ? O5 J0K 301 A 1 HETATM 22 C C3 J0K . . . B 2 14.801 9.314 8.855 1 50.71 ? C3 J0K 301 A 1 HETATM 23 S S1 J0K . . . B 2 15.255 0.198 16.856 1 12.32 ? S1 J0K 301 A 1 HETATM 24 C C10 J0K . . . B 2 15.822 1.492 15.962 1 12.91 ? C10 J0K 301 A 1 HETATM 25 O O2 J0K . . . B 2 13.814 0.242 16.701 1 10.85 ? O2 J0K 301 A 1 HETATM 26 C C11 J0K . . . B 2 14.9 2.577 15.605 1 13.49 ? C11 J0K 301 A 1 HETATM 27 C C12 J0K . . . B 2 15.396 3.647 14.886 1 15.05 ? C12 J0K 301 A 1 HETATM 28 C C9 J0K . . . B 2 17.194 1.656 15.508 1 14.44 ? C9 J0K 301 A 1 HETATM 29 C C8 J0K . . . B 2 17.544 2.752 14.769 1 15.36 ? C8 J0K 301 A 1 HETATM 30 C C23 J0K . . . B 2 17.251 4.937 12.474 1 29.91 ? C23 J0K 301 A 1 HETATM 31 C C24 J0K . . . B 2 17.051 4.845 13.796 1 23.74 ? C24 J0K 301 A 1 HETATM 32 C C7 J0K . . . B 2 16.668 3.718 14.475 1 18.29 ? C7 J0K 301 A 1 HETATM 33 N N2 J0K . . . B 2 17.203 6.191 11.77 1 30.48 ? N2 J0K 301 A 1 HETATM 34 O O3 J0K . . . B 2 15.009 5.65 10.99 1 32.12 ? O3 J0K 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #