data_6QG7 # _model_server_result.job_id omIwRGd03nMRUIF9JKs9xw _model_server_result.datetime_utc '2024-12-23 10:55:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6QG7 # _exptl.entry_id 6QG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-1-(3-(4-amino-3-(naphthalen-1-yl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl)prop-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QG7 _cell.length_a 59.4 _cell.length_b 65.8 _cell.length_c 86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 112 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 218 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CBC _struct_conn.ptnr2_label_comp_id 6HL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 6HL _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.707 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H22 N6 O' _chem_comp.formula_weight 398.46 _chem_comp.id 6HL _chem_comp.mon_nstd_flag . _chem_comp.name (R)-1-(3-(4-amino-3-(naphthalen-1-yl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl)piperidin-1-yl)prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ CAI 6HL doub 1 n y CAJ CAE 6HL sing 2 n y CAF CAE 6HL doub 3 n y CAF CAA 6HL sing 4 n y CAI CAH 6HL sing 5 n y CAE CAD 6HL sing 6 n y CAA CAB 6HL doub 7 n y CAH CAG 6HL doub 8 n y CAD CAG 6HL sing 9 n y CAD CAC 6HL doub 10 n y CAB CAC 6HL sing 11 n y CAC CAO 6HL sing 12 n n CAO NAN 6HL doub 13 n y CAO C5 6HL sing 14 n y NBD C6 6HL sing 15 n n NAN NAM 6HL sing 16 n y C5 C6 6HL doub 17 n y C5 C4 6HL sing 18 n y C6 N1 6HL sing 19 n y NAM C4 6HL sing 20 n y NAM CAY 6HL sing 21 n n C4 N3 6HL doub 22 n y N1 C2 6HL doub 23 n y CAX CAY 6HL sing 24 n n CAX NAW 6HL sing 25 n n CAY CAT 6HL sing 26 n n CAT CAU 6HL sing 27 n n CAV NAW 6HL sing 28 n n CAV CAU 6HL sing 29 n n NAW CAZ 6HL sing 30 n n N3 C2 6HL sing 31 n y CAZ CBB 6HL sing 32 n n CAZ OBA 6HL doub 33 n n CBB CBC 6HL doub 34 n n CBC H1 6HL sing 35 n n CBC H2 6HL sing 36 n n CBB H4 6HL sing 37 n n CAX H6 6HL sing 38 n n CAX H7 6HL sing 39 n n CAV H8 6HL sing 40 n n CAV H9 6HL sing 41 n n CAU H10 6HL sing 42 n n CAU H11 6HL sing 43 n n CAT H12 6HL sing 44 n n CAT H13 6HL sing 45 n n CAY H14 6HL sing 46 n n C2 H15 6HL sing 47 n n NBD H16 6HL sing 48 n n NBD H17 6HL sing 49 n n CAG H18 6HL sing 50 n n CAH H19 6HL sing 51 n n CAI H20 6HL sing 52 n n CAJ H21 6HL sing 53 n n CAF H22 6HL sing 54 n n CAA H23 6HL sing 55 n n CAB H24 6HL sing 56 n n # _atom_sites.entry_id 6QG7 _atom_sites.fract_transf_matrix[1][1] 0.016835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015198 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6HL A 1 501 1 6HL R03 . C 3 HOH A 1 601 33 HOH HOH . C 3 HOH A 2 602 42 HOH HOH . C 3 HOH A 3 603 21 HOH HOH . C 3 HOH A 4 604 58 HOH HOH . C 3 HOH A 5 605 16 HOH HOH . C 3 HOH A 6 606 40 HOH HOH . C 3 HOH A 7 607 96 HOH HOH . C 3 HOH A 8 608 98 HOH HOH . C 3 HOH A 9 609 4 HOH HOH . C 3 HOH A 10 610 18 HOH HOH . C 3 HOH A 11 611 31 HOH HOH . C 3 HOH A 12 612 94 HOH HOH . C 3 HOH A 13 613 69 HOH HOH . C 3 HOH A 14 614 26 HOH HOH . C 3 HOH A 15 615 43 HOH HOH . C 3 HOH A 16 616 2 HOH HOH . C 3 HOH A 17 617 78 HOH HOH . C 3 HOH A 18 618 61 HOH HOH . C 3 HOH A 19 619 30 HOH HOH . C 3 HOH A 20 620 84 HOH HOH . C 3 HOH A 21 621 82 HOH HOH . C 3 HOH A 22 622 5 HOH HOH . C 3 HOH A 23 623 71 HOH HOH . C 3 HOH A 24 624 38 HOH HOH . C 3 HOH A 25 625 97 HOH HOH . C 3 HOH A 26 626 22 HOH HOH . C 3 HOH A 27 627 47 HOH HOH . C 3 HOH A 28 628 34 HOH HOH . C 3 HOH A 29 629 6 HOH HOH . C 3 HOH A 30 630 93 HOH HOH . C 3 HOH A 31 631 48 HOH HOH . C 3 HOH A 32 632 80 HOH HOH . C 3 HOH A 33 633 39 HOH HOH . C 3 HOH A 34 634 77 HOH HOH . C 3 HOH A 35 635 36 HOH HOH . C 3 HOH A 36 636 32 HOH HOH . C 3 HOH A 37 637 17 HOH HOH . C 3 HOH A 38 638 46 HOH HOH . C 3 HOH A 39 639 50 HOH HOH . C 3 HOH A 40 640 67 HOH HOH . C 3 HOH A 41 641 45 HOH HOH . C 3 HOH A 42 642 44 HOH HOH . C 3 HOH A 43 643 37 HOH HOH . C 3 HOH A 44 644 54 HOH HOH . C 3 HOH A 45 645 49 HOH HOH . C 3 HOH A 46 646 23 HOH HOH . C 3 HOH A 47 647 29 HOH HOH . C 3 HOH A 48 648 60 HOH HOH . C 3 HOH A 49 649 20 HOH HOH . C 3 HOH A 50 650 53 HOH HOH . C 3 HOH A 51 651 99 HOH HOH . C 3 HOH A 52 652 87 HOH HOH . C 3 HOH A 53 653 25 HOH HOH . C 3 HOH A 54 654 55 HOH HOH . C 3 HOH A 55 655 83 HOH HOH . C 3 HOH A 56 656 15 HOH HOH . C 3 HOH A 57 657 65 HOH HOH . C 3 HOH A 58 658 57 HOH HOH . C 3 HOH A 59 659 52 HOH HOH . C 3 HOH A 60 660 63 HOH HOH . C 3 HOH A 61 661 28 HOH HOH . C 3 HOH A 62 662 19 HOH HOH . C 3 HOH A 63 663 10 HOH HOH . C 3 HOH A 64 664 74 HOH HOH . C 3 HOH A 65 665 3 HOH HOH . C 3 HOH A 66 666 88 HOH HOH . C 3 HOH A 67 667 24 HOH HOH . C 3 HOH A 68 668 13 HOH HOH . C 3 HOH A 69 669 8 HOH HOH . C 3 HOH A 70 670 85 HOH HOH . C 3 HOH A 71 671 9 HOH HOH . C 3 HOH A 72 672 7 HOH HOH . C 3 HOH A 73 673 14 HOH HOH . C 3 HOH A 74 674 68 HOH HOH . C 3 HOH A 75 675 101 HOH HOH . C 3 HOH A 76 676 12 HOH HOH . C 3 HOH A 77 677 11 HOH HOH . C 3 HOH A 78 678 92 HOH HOH . C 3 HOH A 79 679 81 HOH HOH . C 3 HOH A 80 680 64 HOH HOH . C 3 HOH A 81 681 103 HOH HOH . C 3 HOH A 82 682 35 HOH HOH . C 3 HOH A 83 683 100 HOH HOH . C 3 HOH A 84 684 1 HOH HOH . C 3 HOH A 85 685 27 HOH HOH . C 3 HOH A 86 686 76 HOH HOH . C 3 HOH A 87 687 75 HOH HOH . C 3 HOH A 88 688 102 HOH HOH . C 3 HOH A 89 689 79 HOH HOH . C 3 HOH A 90 690 41 HOH HOH . C 3 HOH A 91 691 51 HOH HOH . C 3 HOH A 92 692 72 HOH HOH . C 3 HOH A 93 693 56 HOH HOH . C 3 HOH A 94 694 70 HOH HOH . C 3 HOH A 95 695 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6HL . . . B 2 -24.194 8.271 -4.768 1 45.01 ? C4 6HL 501 A 1 HETATM 2 C C5 6HL . . . B 2 -24.532 7.039 -5.161 1 46.2 ? C5 6HL 501 A 1 HETATM 3 C C6 6HL . . . B 2 -24.048 6.013 -4.411 1 45.74 ? C6 6HL 501 A 1 HETATM 4 N N1 6HL . . . B 2 -23.26 6.194 -3.343 1 44.46 ? N1 6HL 501 A 1 HETATM 5 N N3 6HL . . . B 2 -23.398 8.507 -3.715 1 39.63 ? N3 6HL 501 A 1 HETATM 6 C CBC 6HL . . . B 2 -21.436 14.348 -7.252 1 39.79 ? CBC 6HL 501 A 1 HETATM 7 C CBB 6HL . . . B 2 -22.363 13.156 -7.001 1 51.82 ? CBB 6HL 501 A 1 HETATM 8 C CAZ 6HL . . . B 2 -23.406 13.588 -5.979 1 47.84 ? CAZ 6HL 501 A 1 HETATM 9 O OBA 6HL . . . B 2 -23.285 14.68 -5.423 1 44.64 ? OBA 6HL 501 A 1 HETATM 10 N NAW 6HL . . . B 2 -24.542 12.879 -5.9 1 44.73 ? NAW 6HL 501 A 1 HETATM 11 C CAX 6HL . . . B 2 -24.828 11.533 -6.432 1 44.78 ? CAX 6HL 501 A 1 HETATM 12 C CAV 6HL . . . B 2 -25.525 13.324 -4.905 1 48.13 ? CAV 6HL 501 A 1 HETATM 13 C CAU 6HL . . . B 2 -25.202 12.456 -3.723 1 52.88 ? CAU 6HL 501 A 1 HETATM 14 C CAT 6HL . . . B 2 -25.381 10.981 -4.13 1 46.61 ? CAT 6HL 501 A 1 HETATM 15 C CAY 6HL . . . B 2 -24.468 10.579 -5.296 1 41.61 ? CAY 6HL 501 A 1 HETATM 16 N NAM 6HL . . . B 2 -24.695 9.147 -5.623 1 41.45 ? NAM 6HL 501 A 1 HETATM 17 N NAN 6HL . . . B 2 -25.315 8.589 -6.443 1 41.81 ? NAN 6HL 501 A 1 HETATM 18 C C2 6HL . . . B 2 -22.902 7.468 -2.949 1 40.49 ? C2 6HL 501 A 1 HETATM 19 N NBD 6HL . . . B 2 -24.324 4.755 -4.711 1 47.07 ? NBD 6HL 501 A 1 HETATM 20 C CAO 6HL . . . B 2 -25.365 7.27 -6.215 1 46.65 ? CAO 6HL 501 A 1 HETATM 21 C CAC 6HL . . . B 2 -25.951 6.377 -7.065 1 50.91 ? CAC 6HL 501 A 1 HETATM 22 C CAD 6HL . . . B 2 -26.161 6.553 -8.451 1 53.95 ? CAD 6HL 501 A 1 HETATM 23 C CAG 6HL . . . B 2 -25.863 7.74 -9.115 1 62.28 ? CAG 6HL 501 A 1 HETATM 24 C CAH 6HL . . . B 2 -26.119 7.9 -10.472 1 70.04 ? CAH 6HL 501 A 1 HETATM 25 C CAI 6HL . . . B 2 -26.678 6.867 -11.209 1 68.25 ? CAI 6HL 501 A 1 HETATM 26 C CAJ 6HL . . . B 2 -26.979 5.677 -10.569 1 60.95 ? CAJ 6HL 501 A 1 HETATM 27 C CAE 6HL . . . B 2 -26.727 5.52 -9.213 1 56.92 ? CAE 6HL 501 A 1 HETATM 28 C CAF 6HL . . . B 2 -27.06 4.297 -8.657 1 58.58 ? CAF 6HL 501 A 1 HETATM 29 C CAA 6HL . . . B 2 -26.83 4.098 -7.316 1 56.49 ? CAA 6HL 501 A 1 HETATM 30 C CAB 6HL . . . B 2 -26.239 5.109 -6.588 1 52.33 ? CAB 6HL 501 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #