data_6QGV # _model_server_result.job_id 0Tv4CFR3I1RSyMvC82crCA _model_server_result.datetime_utc '2024-11-28 02:50:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6QGV # _exptl.entry_id 6QGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6QGV _cell.length_a 120.065 _cell.length_b 120.065 _cell.length_c 86.563 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 139 A HIS 313 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc2 A OD1 ASP 141 A ASP 315 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 A NE2 HIS 200 A HIS 374 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc4 B MN MN . A MN 501 1_555 C N30 J2H . A J2H 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc5 B MN MN . A MN 501 1_555 C N27 J2H . A J2H 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 B MN MN . A MN 501 1_555 H O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QGV _atom_sites.fract_transf_matrix[1][1] 0.008329 _atom_sites.fract_transf_matrix[1][2] 0.004809 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 501 MN MN . C 3 J2H A 1 502 601 J2H 167 . D 4 GOL A 1 503 701 GOL GOL . E 5 IPA A 1 504 801 IPA IPA . F 6 SO4 A 1 505 901 SO4 SO4 . G 6 SO4 A 1 506 902 SO4 SO4 . H 7 HOH A 1 601 157 HOH HOH . H 7 HOH A 2 602 79 HOH HOH . H 7 HOH A 3 603 211 HOH HOH . H 7 HOH A 4 604 133 HOH HOH . H 7 HOH A 5 605 156 HOH HOH . H 7 HOH A 6 606 47 HOH HOH . H 7 HOH A 7 607 219 HOH HOH . H 7 HOH A 8 608 163 HOH HOH . H 7 HOH A 9 609 249 HOH HOH . H 7 HOH A 10 610 78 HOH HOH . H 7 HOH A 11 611 101 HOH HOH . H 7 HOH A 12 612 54 HOH HOH . H 7 HOH A 13 613 48 HOH HOH . H 7 HOH A 14 614 155 HOH HOH . H 7 HOH A 15 615 248 HOH HOH . H 7 HOH A 16 616 247 HOH HOH . H 7 HOH A 17 617 80 HOH HOH . H 7 HOH A 18 618 124 HOH HOH . H 7 HOH A 19 619 11 HOH HOH . H 7 HOH A 20 620 58 HOH HOH . H 7 HOH A 21 621 21 HOH HOH . H 7 HOH A 22 622 16 HOH HOH . H 7 HOH A 23 623 8 HOH HOH . H 7 HOH A 24 624 123 HOH HOH . H 7 HOH A 25 625 29 HOH HOH . H 7 HOH A 26 626 99 HOH HOH . H 7 HOH A 27 627 130 HOH HOH . H 7 HOH A 28 628 28 HOH HOH . H 7 HOH A 29 629 5 HOH HOH . H 7 HOH A 30 630 24 HOH HOH . H 7 HOH A 31 631 148 HOH HOH . H 7 HOH A 32 632 32 HOH HOH . H 7 HOH A 33 633 67 HOH HOH . H 7 HOH A 34 634 17 HOH HOH . H 7 HOH A 35 635 3 HOH HOH . H 7 HOH A 36 636 89 HOH HOH . H 7 HOH A 37 637 30 HOH HOH . H 7 HOH A 38 638 137 HOH HOH . H 7 HOH A 39 639 12 HOH HOH . H 7 HOH A 40 640 23 HOH HOH . H 7 HOH A 41 641 223 HOH HOH . H 7 HOH A 42 642 147 HOH HOH . H 7 HOH A 43 643 57 HOH HOH . H 7 HOH A 44 644 242 HOH HOH . H 7 HOH A 45 645 61 HOH HOH . H 7 HOH A 46 646 209 HOH HOH . H 7 HOH A 47 647 142 HOH HOH . H 7 HOH A 48 648 35 HOH HOH . H 7 HOH A 49 649 38 HOH HOH . H 7 HOH A 50 650 63 HOH HOH . H 7 HOH A 51 651 115 HOH HOH . H 7 HOH A 52 652 131 HOH HOH . H 7 HOH A 53 653 97 HOH HOH . H 7 HOH A 54 654 4 HOH HOH . H 7 HOH A 55 655 95 HOH HOH . H 7 HOH A 56 656 77 HOH HOH . H 7 HOH A 57 657 71 HOH HOH . H 7 HOH A 58 658 45 HOH HOH . H 7 HOH A 59 659 82 HOH HOH . H 7 HOH A 60 660 149 HOH HOH . H 7 HOH A 61 661 146 HOH HOH . H 7 HOH A 62 662 20 HOH HOH . H 7 HOH A 63 663 50 HOH HOH . H 7 HOH A 64 664 230 HOH HOH . H 7 HOH A 65 665 81 HOH HOH . H 7 HOH A 66 666 13 HOH HOH . H 7 HOH A 67 667 91 HOH HOH . H 7 HOH A 68 668 22 HOH HOH . H 7 HOH A 69 669 62 HOH HOH . H 7 HOH A 70 670 9 HOH HOH . H 7 HOH A 71 671 31 HOH HOH . H 7 HOH A 72 672 73 HOH HOH . H 7 HOH A 73 673 52 HOH HOH . H 7 HOH A 74 674 37 HOH HOH . H 7 HOH A 75 675 85 HOH HOH . H 7 HOH A 76 676 104 HOH HOH . H 7 HOH A 77 677 90 HOH HOH . H 7 HOH A 78 678 141 HOH HOH . H 7 HOH A 79 679 206 HOH HOH . H 7 HOH A 80 680 243 HOH HOH . H 7 HOH A 81 681 34 HOH HOH . H 7 HOH A 82 682 234 HOH HOH . H 7 HOH A 83 683 110 HOH HOH . H 7 HOH A 84 684 2 HOH HOH . H 7 HOH A 85 685 103 HOH HOH . H 7 HOH A 86 686 40 HOH HOH . H 7 HOH A 87 687 18 HOH HOH . H 7 HOH A 88 688 136 HOH HOH . H 7 HOH A 89 689 122 HOH HOH . H 7 HOH A 90 690 227 HOH HOH . H 7 HOH A 91 691 7 HOH HOH . H 7 HOH A 92 692 92 HOH HOH . H 7 HOH A 93 693 76 HOH HOH . H 7 HOH A 94 694 56 HOH HOH . H 7 HOH A 95 695 42 HOH HOH . H 7 HOH A 96 696 25 HOH HOH . H 7 HOH A 97 697 87 HOH HOH . H 7 HOH A 98 698 111 HOH HOH . H 7 HOH A 99 699 44 HOH HOH . H 7 HOH A 100 700 140 HOH HOH . H 7 HOH A 101 701 72 HOH HOH . H 7 HOH A 102 702 6 HOH HOH . H 7 HOH A 103 703 98 HOH HOH . H 7 HOH A 104 704 66 HOH HOH . H 7 HOH A 105 705 1 HOH HOH . H 7 HOH A 106 706 41 HOH HOH . H 7 HOH A 107 707 65 HOH HOH . H 7 HOH A 108 708 222 HOH HOH . H 7 HOH A 109 709 59 HOH HOH . H 7 HOH A 110 710 26 HOH HOH . H 7 HOH A 111 711 164 HOH HOH . H 7 HOH A 112 712 86 HOH HOH . H 7 HOH A 113 713 151 HOH HOH . H 7 HOH A 114 714 120 HOH HOH . H 7 HOH A 115 715 64 HOH HOH . H 7 HOH A 116 716 160 HOH HOH . H 7 HOH A 117 717 68 HOH HOH . H 7 HOH A 118 718 84 HOH HOH . H 7 HOH A 119 719 154 HOH HOH . H 7 HOH A 120 720 102 HOH HOH . H 7 HOH A 121 721 94 HOH HOH . H 7 HOH A 122 722 171 HOH HOH . H 7 HOH A 123 723 153 HOH HOH . H 7 HOH A 124 724 55 HOH HOH . H 7 HOH A 125 725 145 HOH HOH . H 7 HOH A 126 726 14 HOH HOH . H 7 HOH A 127 727 228 HOH HOH . H 7 HOH A 128 728 237 HOH HOH . H 7 HOH A 129 729 236 HOH HOH . H 7 HOH A 130 730 170 HOH HOH . H 7 HOH A 131 731 132 HOH HOH . H 7 HOH A 132 732 229 HOH HOH . H 7 HOH A 133 733 96 HOH HOH . H 7 HOH A 134 734 168 HOH HOH . H 7 HOH A 135 735 158 HOH HOH . H 7 HOH A 136 736 152 HOH HOH . H 7 HOH A 137 737 165 HOH HOH . H 7 HOH A 138 738 212 HOH HOH . H 7 HOH A 139 739 100 HOH HOH . H 7 HOH A 140 740 169 HOH HOH . H 7 HOH A 141 741 167 HOH HOH . H 7 HOH A 142 742 75 HOH HOH . H 7 HOH A 143 743 205 HOH HOH . H 7 HOH A 144 744 53 HOH HOH . H 7 HOH A 145 745 159 HOH HOH . H 7 HOH A 146 746 207 HOH HOH . H 7 HOH A 147 747 231 HOH HOH . H 7 HOH A 148 748 161 HOH HOH . H 7 HOH A 149 749 114 HOH HOH . H 7 HOH A 150 750 113 HOH HOH . H 7 HOH A 151 751 49 HOH HOH . H 7 HOH A 152 752 201 HOH HOH . H 7 HOH A 153 753 220 HOH HOH . H 7 HOH A 154 754 210 HOH HOH . H 7 HOH A 155 755 139 HOH HOH . H 7 HOH A 156 756 204 HOH HOH . H 7 HOH A 157 757 233 HOH HOH . H 7 HOH A 158 758 69 HOH HOH . H 7 HOH A 159 759 174 HOH HOH . H 7 HOH A 160 760 15 HOH HOH . H 7 HOH A 161 761 70 HOH HOH . H 7 HOH A 162 762 36 HOH HOH . H 7 HOH A 163 763 221 HOH HOH . H 7 HOH A 164 764 202 HOH HOH . H 7 HOH A 165 765 224 HOH HOH . H 7 HOH A 166 766 216 HOH HOH . H 7 HOH A 167 767 39 HOH HOH . H 7 HOH A 168 768 51 HOH HOH . H 7 HOH A 169 769 246 HOH HOH . H 7 HOH A 170 770 241 HOH HOH . H 7 HOH A 171 771 225 HOH HOH . H 7 HOH A 172 772 105 HOH HOH . H 7 HOH A 173 773 245 HOH HOH . H 7 HOH A 174 774 166 HOH HOH . H 7 HOH A 175 775 83 HOH HOH . H 7 HOH A 176 776 119 HOH HOH . H 7 HOH A 177 777 172 HOH HOH . H 7 HOH A 178 778 173 HOH HOH . H 7 HOH A 179 779 217 HOH HOH . H 7 HOH A 180 780 143 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.231 _atom_site.Cartn_y 2.198 _atom_site.Cartn_z 32.589 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #