data_6QH9 # _model_server_result.job_id 8KduOncCL8bCeUrbmsNQNw _model_server_result.datetime_utc '2024-12-28 18:43:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qh9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6QH9 # _exptl.entry_id 6QH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.06 _cell.angle_gamma 90 _cell.entry_id 6QH9 _cell.length_a 58.59 _cell.length_b 46.32 _cell.length_c 91.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 136 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 110 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 117 A CYS 136 1_555 A SG CYS 182 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 A SG CYS 147 A CYS 168 1_555 A SG CYS 161 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 172 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf7 B SG CYS 7 B CYS 22 1_555 B SG CYS 136 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 B SG CYS 26 B CYS 42 1_555 B SG CYS 42 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 B SG CYS 110 B CYS 128 1_555 B SG CYS 210 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf10 B SG CYS 117 B CYS 136 1_555 B SG CYS 182 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 147 B CYS 168 1_555 B SG CYS 161 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 B SG CYS 172 B CYS 191 1_555 B SG CYS 197 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6QH9 _atom_sites.fract_transf_matrix[1][1] 0.017068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001211 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UNX A 1 301 1 UNX UNX . D 3 J2N A 1 302 1 J2N LIG . E 4 J3B A 1 303 1 J3B XXX . F 5 GOL B 1 301 1 GOL GOL . G 3 J2N B 1 302 2 J2N LIG . H 4 J3B B 1 303 2 J3B XXX . I 6 HOH A 1 401 99 HOH HOH . I 6 HOH A 2 402 173 HOH HOH . I 6 HOH A 3 403 69 HOH HOH . I 6 HOH A 4 404 6 HOH HOH . I 6 HOH A 5 405 199 HOH HOH . I 6 HOH A 6 406 46 HOH HOH . I 6 HOH A 7 407 70 HOH HOH . I 6 HOH A 8 408 27 HOH HOH . I 6 HOH A 9 409 165 HOH HOH . I 6 HOH A 10 410 8 HOH HOH . I 6 HOH A 11 411 12 HOH HOH . I 6 HOH A 12 412 38 HOH HOH . I 6 HOH A 13 413 25 HOH HOH . I 6 HOH A 14 414 41 HOH HOH . I 6 HOH A 15 415 29 HOH HOH . I 6 HOH A 16 416 3 HOH HOH . I 6 HOH A 17 417 163 HOH HOH . I 6 HOH A 18 418 210 HOH HOH . I 6 HOH A 19 419 207 HOH HOH . I 6 HOH A 20 420 174 HOH HOH . I 6 HOH A 21 421 176 HOH HOH . I 6 HOH A 22 422 18 HOH HOH . I 6 HOH A 23 423 132 HOH HOH . I 6 HOH A 24 424 78 HOH HOH . I 6 HOH A 25 425 51 HOH HOH . I 6 HOH A 26 426 53 HOH HOH . I 6 HOH A 27 427 36 HOH HOH . I 6 HOH A 28 428 212 HOH HOH . I 6 HOH A 29 429 58 HOH HOH . I 6 HOH A 30 430 43 HOH HOH . I 6 HOH A 31 431 4 HOH HOH . I 6 HOH A 32 432 100 HOH HOH . I 6 HOH A 33 433 218 HOH HOH . I 6 HOH A 34 434 177 HOH HOH . I 6 HOH A 35 435 159 HOH HOH . I 6 HOH A 36 436 116 HOH HOH . I 6 HOH A 37 437 11 HOH HOH . I 6 HOH A 38 438 209 HOH HOH . I 6 HOH A 39 439 109 HOH HOH . I 6 HOH A 40 440 56 HOH HOH . I 6 HOH A 41 441 17 HOH HOH . I 6 HOH A 42 442 85 HOH HOH . I 6 HOH A 43 443 94 HOH HOH . I 6 HOH A 44 444 113 HOH HOH . I 6 HOH A 45 445 192 HOH HOH . I 6 HOH A 46 446 71 HOH HOH . I 6 HOH A 47 447 84 HOH HOH . I 6 HOH A 48 448 219 HOH HOH . I 6 HOH A 49 449 35 HOH HOH . I 6 HOH A 50 450 96 HOH HOH . I 6 HOH A 51 451 88 HOH HOH . I 6 HOH A 52 452 180 HOH HOH . I 6 HOH A 53 453 2 HOH HOH . I 6 HOH A 54 454 37 HOH HOH . I 6 HOH A 55 455 162 HOH HOH . I 6 HOH A 56 456 1 HOH HOH . I 6 HOH A 57 457 211 HOH HOH . I 6 HOH A 58 458 193 HOH HOH . I 6 HOH A 59 459 98 HOH HOH . I 6 HOH A 60 460 44 HOH HOH . I 6 HOH A 61 461 64 HOH HOH . I 6 HOH A 62 462 216 HOH HOH . I 6 HOH A 63 463 50 HOH HOH . I 6 HOH A 64 464 31 HOH HOH . I 6 HOH A 65 465 93 HOH HOH . I 6 HOH A 66 466 135 HOH HOH . I 6 HOH A 67 467 186 HOH HOH . I 6 HOH A 68 468 103 HOH HOH . I 6 HOH A 69 469 89 HOH HOH . I 6 HOH A 70 470 191 HOH HOH . I 6 HOH A 71 471 205 HOH HOH . I 6 HOH A 72 472 121 HOH HOH . I 6 HOH A 73 473 208 HOH HOH . I 6 HOH A 74 474 187 HOH HOH . I 6 HOH A 75 475 134 HOH HOH . I 6 HOH A 76 476 80 HOH HOH . I 6 HOH A 77 477 188 HOH HOH . I 6 HOH A 78 478 182 HOH HOH . I 6 HOH A 79 479 9 HOH HOH . I 6 HOH A 80 480 32 HOH HOH . I 6 HOH A 81 481 90 HOH HOH . I 6 HOH A 82 482 81 HOH HOH . I 6 HOH A 83 483 55 HOH HOH . I 6 HOH A 84 484 213 HOH HOH . I 6 HOH A 85 485 202 HOH HOH . I 6 HOH A 86 486 157 HOH HOH . I 6 HOH A 87 487 190 HOH HOH . I 6 HOH A 88 488 63 HOH HOH . I 6 HOH A 89 489 139 HOH HOH . I 6 HOH A 90 490 104 HOH HOH . I 6 HOH A 91 491 137 HOH HOH . I 6 HOH A 92 492 198 HOH HOH . I 6 HOH A 93 493 197 HOH HOH . I 6 HOH A 94 494 160 HOH HOH . I 6 HOH A 95 495 215 HOH HOH . I 6 HOH A 96 496 164 HOH HOH . I 6 HOH A 97 497 119 HOH HOH . I 6 HOH A 98 498 120 HOH HOH . I 6 HOH A 99 499 79 HOH HOH . I 6 HOH A 100 500 122 HOH HOH . I 6 HOH A 101 501 133 HOH HOH . I 6 HOH A 102 502 233 HOH HOH . I 6 HOH A 103 503 111 HOH HOH . I 6 HOH A 104 504 204 HOH HOH . I 6 HOH A 105 505 206 HOH HOH . I 6 HOH A 106 506 201 HOH HOH . I 6 HOH A 107 507 131 HOH HOH . I 6 HOH A 108 508 77 HOH HOH . I 6 HOH A 109 509 155 HOH HOH . I 6 HOH A 110 510 15 HOH HOH . I 6 HOH A 111 511 42 HOH HOH . I 6 HOH A 112 512 123 HOH HOH . I 6 HOH A 113 513 61 HOH HOH . I 6 HOH A 114 514 87 HOH HOH . I 6 HOH A 115 515 156 HOH HOH . I 6 HOH A 116 516 141 HOH HOH . I 6 HOH A 117 517 175 HOH HOH . I 6 HOH A 118 518 214 HOH HOH . I 6 HOH A 119 519 140 HOH HOH . I 6 HOH A 120 520 161 HOH HOH . I 6 HOH A 121 521 203 HOH HOH . I 6 HOH A 122 522 158 HOH HOH . I 6 HOH A 123 523 127 HOH HOH . I 6 HOH A 124 524 178 HOH HOH . I 6 HOH A 125 525 142 HOH HOH . I 6 HOH A 126 526 92 HOH HOH . I 6 HOH A 127 527 72 HOH HOH . I 6 HOH A 128 528 179 HOH HOH . I 6 HOH A 129 529 23 HOH HOH . I 6 HOH A 130 530 195 HOH HOH . I 6 HOH A 131 531 217 HOH HOH . I 6 HOH A 132 532 189 HOH HOH . J 6 HOH B 1 401 52 HOH HOH . J 6 HOH B 2 402 39 HOH HOH . J 6 HOH B 3 403 82 HOH HOH . J 6 HOH B 4 404 126 HOH HOH . J 6 HOH B 5 405 232 HOH HOH . J 6 HOH B 6 406 73 HOH HOH . J 6 HOH B 7 407 54 HOH HOH . J 6 HOH B 8 408 154 HOH HOH . J 6 HOH B 9 409 14 HOH HOH . J 6 HOH B 10 410 28 HOH HOH . J 6 HOH B 11 411 222 HOH HOH . J 6 HOH B 12 412 75 HOH HOH . J 6 HOH B 13 413 48 HOH HOH . J 6 HOH B 14 414 45 HOH HOH . J 6 HOH B 15 415 91 HOH HOH . J 6 HOH B 16 416 115 HOH HOH . J 6 HOH B 17 417 65 HOH HOH . J 6 HOH B 18 418 7 HOH HOH . J 6 HOH B 19 419 40 HOH HOH . J 6 HOH B 20 420 19 HOH HOH . J 6 HOH B 21 421 83 HOH HOH . J 6 HOH B 22 422 76 HOH HOH . J 6 HOH B 23 423 47 HOH HOH . J 6 HOH B 24 424 22 HOH HOH . J 6 HOH B 25 425 21 HOH HOH . J 6 HOH B 26 426 143 HOH HOH . J 6 HOH B 27 427 138 HOH HOH . J 6 HOH B 28 428 34 HOH HOH . J 6 HOH B 29 429 181 HOH HOH . J 6 HOH B 30 430 125 HOH HOH . J 6 HOH B 31 431 221 HOH HOH . J 6 HOH B 32 432 172 HOH HOH . J 6 HOH B 33 433 114 HOH HOH . J 6 HOH B 34 434 149 HOH HOH . J 6 HOH B 35 435 136 HOH HOH . J 6 HOH B 36 436 5 HOH HOH . J 6 HOH B 37 437 196 HOH HOH . J 6 HOH B 38 438 147 HOH HOH . J 6 HOH B 39 439 13 HOH HOH . J 6 HOH B 40 440 183 HOH HOH . J 6 HOH B 41 441 107 HOH HOH . J 6 HOH B 42 442 118 HOH HOH . J 6 HOH B 43 443 224 HOH HOH . J 6 HOH B 44 444 59 HOH HOH . J 6 HOH B 45 445 168 HOH HOH . J 6 HOH B 46 446 60 HOH HOH . J 6 HOH B 47 447 49 HOH HOH . J 6 HOH B 48 448 226 HOH HOH . J 6 HOH B 49 449 57 HOH HOH . J 6 HOH B 50 450 20 HOH HOH . J 6 HOH B 51 451 223 HOH HOH . J 6 HOH B 52 452 33 HOH HOH . J 6 HOH B 53 453 169 HOH HOH . J 6 HOH B 54 454 62 HOH HOH . J 6 HOH B 55 455 97 HOH HOH . J 6 HOH B 56 456 150 HOH HOH . J 6 HOH B 57 457 105 HOH HOH . J 6 HOH B 58 458 194 HOH HOH . J 6 HOH B 59 459 124 HOH HOH . J 6 HOH B 60 460 26 HOH HOH . J 6 HOH B 61 461 86 HOH HOH . J 6 HOH B 62 462 66 HOH HOH . J 6 HOH B 63 463 108 HOH HOH . J 6 HOH B 64 464 130 HOH HOH . J 6 HOH B 65 465 10 HOH HOH . J 6 HOH B 66 466 110 HOH HOH . J 6 HOH B 67 467 24 HOH HOH . J 6 HOH B 68 468 185 HOH HOH . J 6 HOH B 69 469 106 HOH HOH . J 6 HOH B 70 470 184 HOH HOH . J 6 HOH B 71 471 153 HOH HOH . J 6 HOH B 72 472 227 HOH HOH . J 6 HOH B 73 473 146 HOH HOH . J 6 HOH B 74 474 230 HOH HOH . J 6 HOH B 75 475 148 HOH HOH . J 6 HOH B 76 476 144 HOH HOH . J 6 HOH B 77 477 151 HOH HOH . J 6 HOH B 78 478 112 HOH HOH . J 6 HOH B 79 479 101 HOH HOH . J 6 HOH B 80 480 117 HOH HOH . J 6 HOH B 81 481 67 HOH HOH . J 6 HOH B 82 482 145 HOH HOH . J 6 HOH B 83 483 16 HOH HOH . J 6 HOH B 84 484 228 HOH HOH . J 6 HOH B 85 485 30 HOH HOH . J 6 HOH B 86 486 229 HOH HOH . J 6 HOH B 87 487 102 HOH HOH . J 6 HOH B 88 488 225 HOH HOH . J 6 HOH B 89 489 68 HOH HOH . J 6 HOH B 90 490 74 HOH HOH . J 6 HOH B 91 491 128 HOH HOH . J 6 HOH B 92 492 129 HOH HOH . J 6 HOH B 93 493 171 HOH HOH . J 6 HOH B 94 494 95 HOH HOH . J 6 HOH B 95 495 200 HOH HOH . J 6 HOH B 96 496 220 HOH HOH . J 6 HOH B 97 497 166 HOH HOH . J 6 HOH B 98 498 167 HOH HOH . J 6 HOH B 99 499 170 HOH HOH . J 6 HOH B 100 500 152 HOH HOH . J 6 HOH B 101 501 231 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -57.897 -9.729 -17.485 1 32.76 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . F 5 -58.963 -10.544 -17.959 1 31.11 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . F 5 -58.165 -8.272 -17.789 1 35.15 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . F 5 -58.472 -8.124 -19.178 1 35.43 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . F 5 -56.969 -7.416 -17.441 1 36.14 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . F 5 -57.248 -6.036 -17.641 1 37.45 ? O3 GOL 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #