data_6QKC # _model_server_result.job_id eTj39ovPXnzAIAOeY05JVw _model_server_result.datetime_utc '2024-11-21 14:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":501}' # _entry.id 6QKC # _exptl.entry_id 6QKC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QKC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 740 A CYS 714 1_555 A SG CYS 795 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 739 B CYS 718 1_555 B SG CYS 794 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 740 C CYS 714 1_555 C SG CYS 795 C CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 739 D CYS 718 1_555 D SG CYS 794 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 E SG CYS 90 I CYS 90 1_555 E SG CYS 100 I CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 F SG CYS 90 J CYS 90 1_555 F SG CYS 100 J CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 268 n n C10 C9 OLC doub 269 n n C10 C11 OLC sing 270 n n C9 C8 OLC sing 271 n n C17 C16 OLC sing 272 z n C11 C12 OLC sing 273 n n C8 C7 OLC sing 274 n n C24 C22 OLC sing 275 n n C24 O25 OLC sing 276 n n C16 C15 OLC sing 277 n n C12 C13 OLC sing 278 n n C7 C6 OLC sing 279 n n C15 C14 OLC sing 280 n n C13 C14 OLC sing 281 n n C6 C5 OLC sing 282 n n C5 C4 OLC sing 283 n n C4 C3 OLC sing 284 n n C3 C2 OLC sing 285 n n C2 C1 OLC sing 286 n n C21 C22 OLC sing 287 n n C21 O20 OLC sing 288 n n C1 O19 OLC doub 289 n n C1 O20 OLC sing 290 n n C22 O23 OLC sing 291 n n C18 H18 OLC sing 292 n n C18 H18A OLC sing 293 n n C18 H18B OLC sing 294 n n C10 H10 OLC sing 295 n n C9 H9 OLC sing 296 n n C17 H17 OLC sing 297 n n C17 H17A OLC sing 298 n n C11 H11 OLC sing 299 n n C11 H11A OLC sing 300 n n C8 H8 OLC sing 301 n n C8 H8A OLC sing 302 n n C24 H24 OLC sing 303 n n C24 H24A OLC sing 304 n n C16 H16 OLC sing 305 n n C16 H16A OLC sing 306 n n C12 H12 OLC sing 307 n n C12 H12A OLC sing 308 n n C7 H7 OLC sing 309 n n C7 H7A OLC sing 310 n n C15 H15 OLC sing 311 n n C15 H15A OLC sing 312 n n C13 H13 OLC sing 313 n n C13 H13A OLC sing 314 n n C6 H6 OLC sing 315 n n C6 H6A OLC sing 316 n n C14 H14 OLC sing 317 n n C14 H14A OLC sing 318 n n C5 H5 OLC sing 319 n n C5 H5A OLC sing 320 n n C4 H4 OLC sing 321 n n C4 H4A OLC sing 322 n n C3 H3 OLC sing 323 n n C3 H3A OLC sing 324 n n C2 H2 OLC sing 325 n n C2 H2A OLC sing 326 n n C21 H21 OLC sing 327 n n C21 H21A OLC sing 328 n n C22 H22 OLC sing 329 n n O25 HO25 OLC sing 330 n n O23 HO23 OLC sing 331 n n # _atom_sites.entry_id 6QKC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 E2Q A 1 901 1 E2Q nbq . H 5 OLC A 1 902 2 OLC OLC . I 5 OLC A 1 903 4 OLC OLC . J 5 OLC A 1 904 5 OLC OLC . K 4 E2Q B 1 901 2 E2Q nbq . L 4 E2Q C 1 901 3 E2Q nbq . M 5 OLC C 1 902 8 OLC OLC . N 5 OLC C 1 903 10 OLC OLC . O 5 OLC C 1 904 11 OLC OLC . P 4 E2Q D 1 901 4 E2Q nbq . Q 5 OLC I 1 501 7 OLC OLC . R 5 OLC I 1 502 9 OLC OLC . S 5 OLC I 1 503 12 OLC OLC . T 5 OLC J 1 501 1 OLC OLC . U 5 OLC J 1 502 3 OLC OLC . V 5 OLC J 1 503 6 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . T 5 130.623 177.137 115.604 1 37.26 ? C18 OLC 501 J 1 HETATM 2 C C10 OLC . . . T 5 128.454 176.244 124.179 1 41.11 ? C10 OLC 501 J 1 HETATM 3 C C9 OLC . . . T 5 128.053 176.214 125.457 1 42.28 ? C9 OLC 501 J 1 HETATM 4 C C17 OLC . . . T 5 131.318 176.324 116.675 1 37.33 ? C17 OLC 501 J 1 HETATM 5 C C11 OLC . . . T 5 129.904 176.315 123.745 1 40.06 ? C11 OLC 501 J 1 HETATM 6 C C8 OLC . . . T 5 128.989 176.25 126.65 1 43.46 ? C8 OLC 501 J 1 HETATM 7 C C24 OLC . . . T 5 130.109 182.131 136.802 1 52.18 ? C24 OLC 501 J 1 HETATM 8 C C16 OLC . . . T 5 131.617 177.174 117.908 1 37.48 ? C16 OLC 501 J 1 HETATM 9 C C12 OLC . . . T 5 130.01 177.063 122.419 1 39.19 ? C12 OLC 501 J 1 HETATM 10 C C7 OLC . . . T 5 128.815 177.571 127.397 1 44.9 ? C7 OLC 501 J 1 HETATM 11 C C15 OLC . . . T 5 131.383 176.418 119.216 1 37.72 ? C15 OLC 501 J 1 HETATM 12 C C13 OLC . . . T 5 129.868 176.134 121.217 1 38.51 ? C13 OLC 501 J 1 HETATM 13 C C6 OLC . . . T 5 127.831 177.446 128.559 1 46.36 ? C6 OLC 501 J 1 HETATM 14 C C14 OLC . . . T 5 130.107 176.887 119.91 1 38.05 ? C14 OLC 501 J 1 HETATM 15 C C5 OLC . . . T 5 126.979 178.703 128.71 1 47.56 ? C5 OLC 501 J 1 HETATM 16 C C4 OLC . . . T 5 126.372 178.819 130.107 1 48.59 ? C4 OLC 501 J 1 HETATM 17 C C3 OLC . . . T 5 126.984 179.983 130.88 1 49.53 ? C3 OLC 501 J 1 HETATM 18 C C2 OLC . . . T 5 126.598 179.937 132.353 1 50.39 ? C2 OLC 501 J 1 HETATM 19 C C21 OLC . . . T 5 128.392 182.076 134.975 1 51.77 ? C21 OLC 501 J 1 HETATM 20 C C1 OLC . . . T 5 127.048 181.21 133.03 1 51.02 ? C1 OLC 501 J 1 HETATM 21 C C22 OLC . . . T 5 129.009 181.307 136.141 1 52.12 ? C22 OLC 501 J 1 HETATM 22 O O19 OLC . . . T 5 126.41 182.241 132.891 1 51.09 ? O19 OLC 501 J 1 HETATM 23 O O25 OLC . . . T 5 130.686 181.388 137.882 1 52.1 ? O25 OLC 501 J 1 HETATM 24 O O23 OLC . . . T 5 127.995 181.006 137.107 1 52.22 ? O23 OLC 501 J 1 HETATM 25 O O20 OLC . . . T 5 128.255 181.211 133.846 1 51.39 ? O20 OLC 501 J 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #