data_6QKC
#
_model_server_result.job_id            oVoOaNFaOdFKYcYdvGC4mQ 
_model_server_result.datetime_utc      '2024-11-21 14:31:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qkc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":502}' 
#
_entry.id    6QKC 
#
_exptl.entry_id    6QKC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QKC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
? 5 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 740 A CYS 714 1_555 A SG CYS 795 A CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 739 B CYS 718 1_555 B SG CYS 794 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 740 C CYS 714 1_555 C SG CYS 795 C CYS 769 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 D SG CYS 739 D CYS 718 1_555 D SG CYS 794 D CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 E SG CYS 90 I CYS 90 1_555 E SG CYS 100 I CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 F SG CYS 90 J CYS 90 1_555 F SG CYS 100 J CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 268 n n 
C10 C9 OLC doub 269 n n 
C10 C11 OLC sing 270 n n 
C9 C8 OLC sing 271 n n 
C17 C16 OLC sing 272 z n 
C11 C12 OLC sing 273 n n 
C8 C7 OLC sing 274 n n 
C24 C22 OLC sing 275 n n 
C24 O25 OLC sing 276 n n 
C16 C15 OLC sing 277 n n 
C12 C13 OLC sing 278 n n 
C7 C6 OLC sing 279 n n 
C15 C14 OLC sing 280 n n 
C13 C14 OLC sing 281 n n 
C6 C5 OLC sing 282 n n 
C5 C4 OLC sing 283 n n 
C4 C3 OLC sing 284 n n 
C3 C2 OLC sing 285 n n 
C2 C1 OLC sing 286 n n 
C21 C22 OLC sing 287 n n 
C21 O20 OLC sing 288 n n 
C1 O19 OLC doub 289 n n 
C1 O20 OLC sing 290 n n 
C22 O23 OLC sing 291 n n 
C18 H18 OLC sing 292 n n 
C18 H18A OLC sing 293 n n 
C18 H18B OLC sing 294 n n 
C10 H10 OLC sing 295 n n 
C9 H9 OLC sing 296 n n 
C17 H17 OLC sing 297 n n 
C17 H17A OLC sing 298 n n 
C11 H11 OLC sing 299 n n 
C11 H11A OLC sing 300 n n 
C8 H8 OLC sing 301 n n 
C8 H8A OLC sing 302 n n 
C24 H24 OLC sing 303 n n 
C24 H24A OLC sing 304 n n 
C16 H16 OLC sing 305 n n 
C16 H16A OLC sing 306 n n 
C12 H12 OLC sing 307 n n 
C12 H12A OLC sing 308 n n 
C7 H7 OLC sing 309 n n 
C7 H7A OLC sing 310 n n 
C15 H15 OLC sing 311 n n 
C15 H15A OLC sing 312 n n 
C13 H13 OLC sing 313 n n 
C13 H13A OLC sing 314 n n 
C6 H6 OLC sing 315 n n 
C6 H6A OLC sing 316 n n 
C14 H14 OLC sing 317 n n 
C14 H14A OLC sing 318 n n 
C5 H5 OLC sing 319 n n 
C5 H5A OLC sing 320 n n 
C4 H4 OLC sing 321 n n 
C4 H4A OLC sing 322 n n 
C3 H3 OLC sing 323 n n 
C3 H3A OLC sing 324 n n 
C2 H2 OLC sing 325 n n 
C2 H2A OLC sing 326 n n 
C21 H21 OLC sing 327 n n 
C21 H21A OLC sing 328 n n 
C22 H22 OLC sing 329 n n 
O25 HO25 OLC sing 330 n n 
O23 HO23 OLC sing 331 n n 
#
_atom_sites.entry_id                     6QKC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 E2Q A 1 901 1 E2Q nbq . 
H 5 OLC A 1 902 2 OLC OLC . 
I 5 OLC A 1 903 4 OLC OLC . 
J 5 OLC A 1 904 5 OLC OLC . 
K 4 E2Q B 1 901 2 E2Q nbq . 
L 4 E2Q C 1 901 3 E2Q nbq . 
M 5 OLC C 1 902 8 OLC OLC . 
N 5 OLC C 1 903 10 OLC OLC . 
O 5 OLC C 1 904 11 OLC OLC . 
P 4 E2Q D 1 901 4 E2Q nbq . 
Q 5 OLC I 1 501 7 OLC OLC . 
R 5 OLC I 1 502 9 OLC OLC . 
S 5 OLC I 1 503 12 OLC OLC . 
T 5 OLC J 1 501 1 OLC OLC . 
U 5 OLC J 1 502 3 OLC OLC . 
V 5 OLC J 1 503 6 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . U 5 131.399 169.641 116.237 1 48.81 ? C18 OLC 502 J 1 
HETATM 2 C C10 OLC . . . U 5 127.233 170.432 124.443 1 54.85 ? C10 OLC 502 J 1 
HETATM 3 C C9 OLC . . . U 5 127.056 171.078 125.603 1 56.9 ? C9 OLC 502 J 1 
HETATM 4 C C17 OLC . . . U 5 130.863 170.716 117.159 1 48.9 ? C17 OLC 502 J 1 
HETATM 5 C C11 OLC . . . U 5 128.48 169.66 124.058 1 53.14 ? C11 OLC 502 J 1 
HETATM 6 C C8 OLC . . . U 5 128.073 171.143 126.726 1 59.08 ? C8 OLC 502 J 1 
HETATM 7 C C24 OLC . . . U 5 127.23 177.566 137.578 1 74.36 ? C24 OLC 502 J 1 
HETATM 8 C C16 OLC . . . U 5 129.854 170.141 118.153 1 48.91 ? C16 OLC 502 J 1 
HETATM 9 C C12 OLC . . . U 5 129.26 170.436 123.002 1 51.75 ? C12 OLC 502 J 1 
HETATM 10 C C7 OLC . . . U 5 127.446 170.601 128.007 1 61.53 ? C7 OLC 502 J 1 
HETATM 11 C C15 OLC . . . U 5 130.354 170.169 119.601 1 49.03 ? C15 OLC 502 J 1 
HETATM 12 C C13 OLC . . . U 5 128.766 170.091 121.6 1 50.55 ? C13 OLC 502 J 1 
HETATM 13 C C6 OLC . . . U 5 126.585 171.649 128.709 1 63.78 ? C6 OLC 502 J 1 
HETATM 14 C C14 OLC . . . U 5 129.436 170.961 120.536 1 49.56 ? C14 OLC 502 J 1 
HETATM 15 C C5 OLC . . . U 5 127.269 172.191 129.961 1 65.89 ? C5 OLC 502 J 1 
HETATM 16 C C4 OLC . . . U 5 126.366 173.173 130.704 1 68.04 ? C4 OLC 502 J 1 
HETATM 17 C C3 OLC . . . U 5 126.702 173.252 132.191 1 70.23 ? C3 OLC 502 J 1 
HETATM 18 C C2 OLC . . . U 5 127.831 174.244 132.45 1 72.28 ? C2 OLC 502 J 1 
HETATM 19 C C21 OLC . . . U 5 127.88 175.785 135.939 1 74.63 ? C21 OLC 502 J 1 
HETATM 20 C C1 OLC . . . U 5 128.163 174.305 133.924 1 73.45 ? C1 OLC 502 J 1 
HETATM 21 C C22 OLC . . . U 5 127.25 177.166 136.106 1 74.6 ? C22 OLC 502 J 1 
HETATM 22 O O19 OLC . . . U 5 128.344 173.285 134.571 1 73.54 ? O19 OLC 502 J 1 
HETATM 23 O O25 OLC . . . U 5 126.262 176.778 138.28 1 74.15 ? O25 OLC 502 J 1 
HETATM 24 O O23 OLC . . . U 5 127.994 178.135 135.357 1 74.53 ? O23 OLC 502 J 1 
HETATM 25 O O20 OLC . . . U 5 128.281 175.598 134.581 1 74.14 ? O20 OLC 502 J 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#