data_6QKG # _model_server_result.job_id rVLfuuLWt74LrfMcnJBmbw _model_server_result.datetime_utc '2024-10-20 19:12:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qkg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 6QKG # _exptl.entry_id 6QKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.71 _cell.angle_gamma 90 _cell.entry_id 6QKG _cell.length_a 82.45 _cell.length_b 86.84 _cell.length_c 96.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 18 1_555 A SG CYS 357 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf2 B SG CYS 18 B CYS 18 1_555 B SG CYS 357 B CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc1 A SG CYS 367 A CYS 367 1_555 C FE3 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A SG CYS 370 A CYS 370 1_555 C FE4 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc3 A SG CYS 374 A CYS 374 1_555 C FE1 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A SG CYS 386 A CYS 386 1_555 C FE2 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc5 B SG CYS 367 B CYS 367 1_555 F FE3 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 B SG CYS 370 B CYS 370 1_555 F FE4 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc7 B SG CYS 374 B CYS 374 1_555 F FE1 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc8 B SG CYS 386 B CYS 386 1_555 F FE2 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 435 n n FE1 S3 SF4 sing 436 n n FE1 S4 SF4 sing 437 n n FE2 S1 SF4 sing 438 n n FE2 S3 SF4 sing 439 n n FE2 S4 SF4 sing 440 n n FE3 S1 SF4 sing 441 n n FE3 S2 SF4 sing 442 n n FE3 S4 SF4 sing 443 n n FE4 S1 SF4 sing 444 n n FE4 S2 SF4 sing 445 n n FE4 S3 SF4 sing 446 n n # _atom_sites.entry_id 6QKG _atom_sites.fract_transf_matrix[1][1] 0.012129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00015 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 801 700 SF4 SF4 . D 3 FAD A 1 802 701 FAD FAD . E 4 FMN A 1 803 702 FMN FMN . F 2 SF4 B 1 801 700 SF4 SF4 . G 3 FAD B 1 802 701 FAD FAD . H 4 FMN B 1 803 702 FMN FMN . I 5 HOH A 1 901 168 HOH HOH . I 5 HOH A 2 902 129 HOH HOH . I 5 HOH A 3 903 26 HOH HOH . I 5 HOH A 4 904 137 HOH HOH . I 5 HOH A 5 905 76 HOH HOH . I 5 HOH A 6 906 24 HOH HOH . I 5 HOH A 7 907 29 HOH HOH . I 5 HOH A 8 908 99 HOH HOH . I 5 HOH A 9 909 70 HOH HOH . I 5 HOH A 10 910 162 HOH HOH . I 5 HOH A 11 911 69 HOH HOH . I 5 HOH A 12 912 68 HOH HOH . I 5 HOH A 13 913 81 HOH HOH . I 5 HOH A 14 914 19 HOH HOH . I 5 HOH A 15 915 152 HOH HOH . I 5 HOH A 16 916 56 HOH HOH . I 5 HOH A 17 917 141 HOH HOH . I 5 HOH A 18 918 50 HOH HOH . I 5 HOH A 19 919 27 HOH HOH . I 5 HOH A 20 920 134 HOH HOH . I 5 HOH A 21 921 38 HOH HOH . I 5 HOH A 22 922 21 HOH HOH . I 5 HOH A 23 923 20 HOH HOH . I 5 HOH A 24 924 33 HOH HOH . I 5 HOH A 25 925 120 HOH HOH . I 5 HOH A 26 926 125 HOH HOH . I 5 HOH A 27 927 148 HOH HOH . I 5 HOH A 28 928 53 HOH HOH . I 5 HOH A 29 929 121 HOH HOH . I 5 HOH A 30 930 39 HOH HOH . I 5 HOH A 31 931 113 HOH HOH . I 5 HOH A 32 932 151 HOH HOH . I 5 HOH A 33 933 23 HOH HOH . I 5 HOH A 34 934 165 HOH HOH . I 5 HOH A 35 935 88 HOH HOH . I 5 HOH A 36 936 176 HOH HOH . I 5 HOH A 37 937 71 HOH HOH . I 5 HOH A 38 938 34 HOH HOH . I 5 HOH A 39 939 178 HOH HOH . I 5 HOH A 40 940 40 HOH HOH . I 5 HOH A 41 941 87 HOH HOH . I 5 HOH A 42 942 96 HOH HOH . I 5 HOH A 43 943 117 HOH HOH . I 5 HOH A 44 944 58 HOH HOH . I 5 HOH A 45 945 143 HOH HOH . I 5 HOH A 46 946 41 HOH HOH . I 5 HOH A 47 947 126 HOH HOH . I 5 HOH A 48 948 201 HOH HOH . I 5 HOH A 49 949 36 HOH HOH . I 5 HOH A 50 950 55 HOH HOH . I 5 HOH A 51 951 160 HOH HOH . I 5 HOH A 52 952 124 HOH HOH . I 5 HOH A 53 953 45 HOH HOH . I 5 HOH A 54 954 174 HOH HOH . I 5 HOH A 55 955 44 HOH HOH . I 5 HOH A 56 956 37 HOH HOH . I 5 HOH A 57 957 60 HOH HOH . I 5 HOH A 58 958 116 HOH HOH . I 5 HOH A 59 959 100 HOH HOH . I 5 HOH A 60 960 32 HOH HOH . I 5 HOH A 61 961 163 HOH HOH . I 5 HOH A 62 962 161 HOH HOH . I 5 HOH A 63 963 30 HOH HOH . I 5 HOH A 64 964 78 HOH HOH . I 5 HOH A 65 965 73 HOH HOH . I 5 HOH A 66 966 173 HOH HOH . I 5 HOH A 67 967 1 HOH HOH . I 5 HOH A 68 968 92 HOH HOH . I 5 HOH A 69 969 42 HOH HOH . I 5 HOH A 70 970 65 HOH HOH . I 5 HOH A 71 971 145 HOH HOH . I 5 HOH A 72 972 43 HOH HOH . I 5 HOH A 73 973 95 HOH HOH . I 5 HOH A 74 974 35 HOH HOH . I 5 HOH A 75 975 98 HOH HOH . I 5 HOH A 76 976 61 HOH HOH . I 5 HOH A 77 977 118 HOH HOH . I 5 HOH A 78 978 122 HOH HOH . I 5 HOH A 79 979 109 HOH HOH . I 5 HOH A 80 980 111 HOH HOH . I 5 HOH A 81 981 197 HOH HOH . I 5 HOH A 82 982 22 HOH HOH . I 5 HOH A 83 983 140 HOH HOH . I 5 HOH A 84 984 142 HOH HOH . I 5 HOH A 85 985 80 HOH HOH . I 5 HOH A 86 986 177 HOH HOH . I 5 HOH A 87 987 67 HOH HOH . I 5 HOH A 88 988 105 HOH HOH . I 5 HOH A 89 989 62 HOH HOH . I 5 HOH A 90 990 108 HOH HOH . I 5 HOH A 91 991 193 HOH HOH . I 5 HOH A 92 992 25 HOH HOH . I 5 HOH A 93 993 107 HOH HOH . I 5 HOH A 94 994 46 HOH HOH . I 5 HOH A 95 995 172 HOH HOH . I 5 HOH A 96 996 18 HOH HOH . I 5 HOH A 97 997 75 HOH HOH . I 5 HOH A 98 998 31 HOH HOH . I 5 HOH A 99 999 51 HOH HOH . I 5 HOH A 100 1000 54 HOH HOH . I 5 HOH A 101 1001 194 HOH HOH . I 5 HOH A 102 1002 199 HOH HOH . I 5 HOH A 103 1003 192 HOH HOH . I 5 HOH A 104 1004 74 HOH HOH . I 5 HOH A 105 1005 79 HOH HOH . I 5 HOH A 106 1006 198 HOH HOH . I 5 HOH A 107 1007 132 HOH HOH . I 5 HOH A 108 1008 49 HOH HOH . I 5 HOH A 109 1009 135 HOH HOH . I 5 HOH A 110 1010 195 HOH HOH . I 5 HOH A 111 1011 123 HOH HOH . I 5 HOH A 112 1012 47 HOH HOH . I 5 HOH A 113 1013 114 HOH HOH . I 5 HOH A 114 1014 169 HOH HOH . I 5 HOH A 115 1015 127 HOH HOH . I 5 HOH A 116 1016 28 HOH HOH . I 5 HOH A 117 1017 156 HOH HOH . I 5 HOH A 118 1018 157 HOH HOH . I 5 HOH A 119 1019 170 HOH HOH . I 5 HOH A 120 1020 171 HOH HOH . I 5 HOH A 121 1021 64 HOH HOH . I 5 HOH A 122 1022 59 HOH HOH . I 5 HOH A 123 1023 175 HOH HOH . I 5 HOH A 124 1024 57 HOH HOH . I 5 HOH A 125 1025 48 HOH HOH . I 5 HOH A 126 1026 154 HOH HOH . I 5 HOH A 127 1027 89 HOH HOH . I 5 HOH A 128 1028 200 HOH HOH . I 5 HOH A 129 1029 63 HOH HOH . I 5 HOH A 130 1030 52 HOH HOH . I 5 HOH A 131 1031 66 HOH HOH . I 5 HOH A 132 1032 202 HOH HOH . J 5 HOH B 1 901 104 HOH HOH . J 5 HOH B 2 902 101 HOH HOH . J 5 HOH B 3 903 153 HOH HOH . J 5 HOH B 4 904 93 HOH HOH . J 5 HOH B 5 905 82 HOH HOH . J 5 HOH B 6 906 77 HOH HOH . J 5 HOH B 7 907 115 HOH HOH . J 5 HOH B 8 908 83 HOH HOH . J 5 HOH B 9 909 86 HOH HOH . J 5 HOH B 10 910 146 HOH HOH . J 5 HOH B 11 911 97 HOH HOH . J 5 HOH B 12 912 182 HOH HOH . J 5 HOH B 13 913 164 HOH HOH . J 5 HOH B 14 914 91 HOH HOH . J 5 HOH B 15 915 84 HOH HOH . J 5 HOH B 16 916 196 HOH HOH . J 5 HOH B 17 917 188 HOH HOH . J 5 HOH B 18 918 138 HOH HOH . J 5 HOH B 19 919 186 HOH HOH . J 5 HOH B 20 920 189 HOH HOH . J 5 HOH B 21 921 185 HOH HOH . J 5 HOH B 22 922 103 HOH HOH . J 5 HOH B 23 923 72 HOH HOH . J 5 HOH B 24 924 149 HOH HOH . J 5 HOH B 25 925 106 HOH HOH . J 5 HOH B 26 926 191 HOH HOH . J 5 HOH B 27 927 102 HOH HOH . J 5 HOH B 28 928 90 HOH HOH . J 5 HOH B 29 929 159 HOH HOH . J 5 HOH B 30 930 183 HOH HOH . J 5 HOH B 31 931 139 HOH HOH . J 5 HOH B 32 932 130 HOH HOH . J 5 HOH B 33 933 158 HOH HOH . J 5 HOH B 34 934 166 HOH HOH . J 5 HOH B 35 935 119 HOH HOH . J 5 HOH B 36 936 85 HOH HOH . J 5 HOH B 37 937 133 HOH HOH . J 5 HOH B 38 938 181 HOH HOH . J 5 HOH B 39 939 187 HOH HOH . J 5 HOH B 40 940 131 HOH HOH . J 5 HOH B 41 941 184 HOH HOH . J 5 HOH B 42 942 110 HOH HOH . J 5 HOH B 43 943 179 HOH HOH . J 5 HOH B 44 944 180 HOH HOH . J 5 HOH B 45 945 155 HOH HOH . J 5 HOH B 46 946 144 HOH HOH . J 5 HOH B 47 947 147 HOH HOH . J 5 HOH B 48 948 150 HOH HOH . J 5 HOH B 49 949 112 HOH HOH . J 5 HOH B 50 950 128 HOH HOH . J 5 HOH B 51 951 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . F 2 -17.536 -46.056 -48.027 1 49.87 ? FE1 SF4 801 B 1 HETATM 2 FE FE2 SF4 . . . F 2 -17.29 -47.033 -50.613 1 51.3 ? FE2 SF4 801 B 1 HETATM 3 FE FE3 SF4 . . . F 2 -18.005 -44.359 -50.164 1 53.11 ? FE3 SF4 801 B 1 HETATM 4 FE FE4 SF4 . . . F 2 -19.824 -46.405 -49.583 1 76.24 ? FE4 SF4 801 B 1 HETATM 5 S S1 SF4 . . . F 2 -19.009 -45.829 -51.683 1 58.29 ? S1 SF4 801 B 1 HETATM 6 S S2 SF4 . . . F 2 -19.265 -44.557 -48.224 1 54.23 ? S2 SF4 801 B 1 HETATM 7 S S3 SF4 . . . F 2 -18.365 -48.071 -48.823 1 55.53 ? S3 SF4 801 B 1 HETATM 8 S S4 SF4 . . . F 2 -15.988 -45.387 -49.617 1 51.5 ? S4 SF4 801 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #