data_6QKR # _model_server_result.job_id D5zhXwDOWy0HGW9aZ56QZw _model_server_result.datetime_utc '2024-10-20 19:04:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 6QKR # _exptl.entry_id 6QKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.67 _cell.angle_gamma 90 _cell.entry_id 6QKR _cell.length_a 81.67 _cell.length_b 86.05 _cell.length_c 96.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 18 1_555 A SG CYS 357 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 B SG CYS 18 B CYS 18 1_555 B SG CYS 357 B CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc1 A SG CYS 367 A CYS 367 1_555 C FE3 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A SG CYS 370 A CYS 370 1_555 C FE4 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A SG CYS 374 A CYS 374 1_555 C FE1 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A SG CYS 386 A CYS 386 1_555 C FE2 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 B SG CYS 367 B CYS 367 1_555 G FE3 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 B SG CYS 370 B CYS 370 1_555 G FE4 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 B SG CYS 374 B CYS 374 1_555 G FE1 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 B SG CYS 386 B CYS 386 1_555 G FE2 SF4 . B SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 541 n n FE1 S3 SF4 sing 542 n n FE1 S4 SF4 sing 543 n n FE2 S1 SF4 sing 544 n n FE2 S3 SF4 sing 545 n n FE2 S4 SF4 sing 546 n n FE3 S1 SF4 sing 547 n n FE3 S2 SF4 sing 548 n n FE3 S4 SF4 sing 549 n n FE4 S1 SF4 sing 550 n n FE4 S2 SF4 sing 551 n n FE4 S3 SF4 sing 552 n n # _atom_sites.entry_id 6QKR _atom_sites.fract_transf_matrix[1][1] 0.012244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011621 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 801 700 SF4 SF4 . D 3 FAD A 1 802 701 FAD FAD . E 4 FMN A 1 803 702 FMN FMN . F 5 J5H A 1 804 710 J5H LIG . G 2 SF4 B 1 801 700 SF4 SF4 . H 3 FAD B 1 802 701 FAD FAD . I 4 FMN B 1 803 702 FMN FMN . J 5 J5H B 1 804 710 J5H LIG . K 6 HOH A 1 901 68 HOH HOH . K 6 HOH A 2 902 148 HOH HOH . K 6 HOH A 3 903 24 HOH HOH . K 6 HOH A 4 904 137 HOH HOH . K 6 HOH A 5 905 70 HOH HOH . K 6 HOH A 6 906 165 HOH HOH . K 6 HOH A 7 907 26 HOH HOH . K 6 HOH A 8 908 172 HOH HOH . K 6 HOH A 9 909 69 HOH HOH . K 6 HOH A 10 910 99 HOH HOH . K 6 HOH A 11 911 129 HOH HOH . K 6 HOH A 12 912 50 HOH HOH . K 6 HOH A 13 913 39 HOH HOH . K 6 HOH A 14 914 152 HOH HOH . K 6 HOH A 15 915 22 HOH HOH . K 6 HOH A 16 916 236 HOH HOH . K 6 HOH A 17 917 168 HOH HOH . K 6 HOH A 18 918 66 HOH HOH . K 6 HOH A 19 919 248 HOH HOH . K 6 HOH A 20 920 71 HOH HOH . K 6 HOH A 21 921 264 HOH HOH . K 6 HOH A 22 922 56 HOH HOH . K 6 HOH A 23 923 76 HOH HOH . K 6 HOH A 24 924 272 HOH HOH . K 6 HOH A 25 925 120 HOH HOH . K 6 HOH A 26 926 21 HOH HOH . K 6 HOH A 27 927 38 HOH HOH . K 6 HOH A 28 928 118 HOH HOH . K 6 HOH A 29 929 42 HOH HOH . K 6 HOH A 30 930 141 HOH HOH . K 6 HOH A 31 931 140 HOH HOH . K 6 HOH A 32 932 23 HOH HOH . K 6 HOH A 33 933 143 HOH HOH . K 6 HOH A 34 934 192 HOH HOH . K 6 HOH A 35 935 124 HOH HOH . K 6 HOH A 36 936 30 HOH HOH . K 6 HOH A 37 937 151 HOH HOH . K 6 HOH A 38 938 96 HOH HOH . K 6 HOH A 39 939 61 HOH HOH . K 6 HOH A 40 940 55 HOH HOH . K 6 HOH A 41 941 92 HOH HOH . K 6 HOH A 42 942 125 HOH HOH . K 6 HOH A 43 943 41 HOH HOH . K 6 HOH A 44 944 134 HOH HOH . K 6 HOH A 45 945 228 HOH HOH . K 6 HOH A 46 946 19 HOH HOH . K 6 HOH A 47 947 121 HOH HOH . K 6 HOH A 48 948 169 HOH HOH . K 6 HOH A 49 949 35 HOH HOH . K 6 HOH A 50 950 219 HOH HOH . K 6 HOH A 51 951 58 HOH HOH . K 6 HOH A 52 952 34 HOH HOH . K 6 HOH A 53 953 60 HOH HOH . K 6 HOH A 54 954 145 HOH HOH . K 6 HOH A 55 955 111 HOH HOH . K 6 HOH A 56 956 162 HOH HOH . K 6 HOH A 57 957 116 HOH HOH . K 6 HOH A 58 958 75 HOH HOH . K 6 HOH A 59 959 88 HOH HOH . K 6 HOH A 60 960 98 HOH HOH . K 6 HOH A 61 961 80 HOH HOH . K 6 HOH A 62 962 210 HOH HOH . K 6 HOH A 63 963 45 HOH HOH . K 6 HOH A 64 964 271 HOH HOH . K 6 HOH A 65 965 81 HOH HOH . K 6 HOH A 66 966 46 HOH HOH . K 6 HOH A 67 967 32 HOH HOH . K 6 HOH A 68 968 109 HOH HOH . K 6 HOH A 69 969 203 HOH HOH . K 6 HOH A 70 970 53 HOH HOH . K 6 HOH A 71 971 185 HOH HOH . K 6 HOH A 72 972 78 HOH HOH . K 6 HOH A 73 973 36 HOH HOH . K 6 HOH A 74 974 31 HOH HOH . K 6 HOH A 75 975 1 HOH HOH . K 6 HOH A 76 976 218 HOH HOH . K 6 HOH A 77 977 123 HOH HOH . K 6 HOH A 78 978 142 HOH HOH . K 6 HOH A 79 979 87 HOH HOH . K 6 HOH A 80 980 267 HOH HOH . K 6 HOH A 81 981 52 HOH HOH . K 6 HOH A 82 982 27 HOH HOH . K 6 HOH A 83 983 37 HOH HOH . K 6 HOH A 84 984 215 HOH HOH . K 6 HOH A 85 985 59 HOH HOH . K 6 HOH A 86 986 220 HOH HOH . K 6 HOH A 87 987 160 HOH HOH . K 6 HOH A 88 988 132 HOH HOH . K 6 HOH A 89 989 122 HOH HOH . K 6 HOH A 90 990 49 HOH HOH . K 6 HOH A 91 991 227 HOH HOH . K 6 HOH A 92 992 89 HOH HOH . K 6 HOH A 93 993 74 HOH HOH . K 6 HOH A 94 994 253 HOH HOH . K 6 HOH A 95 995 113 HOH HOH . K 6 HOH A 96 996 73 HOH HOH . K 6 HOH A 97 997 51 HOH HOH . K 6 HOH A 98 998 20 HOH HOH . K 6 HOH A 99 999 157 HOH HOH . K 6 HOH A 100 1000 18 HOH HOH . K 6 HOH A 101 1001 117 HOH HOH . K 6 HOH A 102 1002 54 HOH HOH . K 6 HOH A 103 1003 273 HOH HOH . K 6 HOH A 104 1004 232 HOH HOH . K 6 HOH A 105 1005 126 HOH HOH . K 6 HOH A 106 1006 67 HOH HOH . K 6 HOH A 107 1007 107 HOH HOH . K 6 HOH A 108 1008 230 HOH HOH . K 6 HOH A 109 1009 95 HOH HOH . K 6 HOH A 110 1010 163 HOH HOH . K 6 HOH A 111 1011 64 HOH HOH . K 6 HOH A 112 1012 233 HOH HOH . K 6 HOH A 113 1013 239 HOH HOH . K 6 HOH A 114 1014 174 HOH HOH . K 6 HOH A 115 1015 79 HOH HOH . K 6 HOH A 116 1016 25 HOH HOH . K 6 HOH A 117 1017 188 HOH HOH . K 6 HOH A 118 1018 57 HOH HOH . K 6 HOH A 119 1019 135 HOH HOH . K 6 HOH A 120 1020 171 HOH HOH . K 6 HOH A 121 1021 180 HOH HOH . K 6 HOH A 122 1022 108 HOH HOH . K 6 HOH A 123 1023 28 HOH HOH . K 6 HOH A 124 1024 114 HOH HOH . K 6 HOH A 125 1025 29 HOH HOH . K 6 HOH A 126 1026 226 HOH HOH . K 6 HOH A 127 1027 47 HOH HOH . K 6 HOH A 128 1028 156 HOH HOH . K 6 HOH A 129 1029 175 HOH HOH . K 6 HOH A 130 1030 127 HOH HOH . K 6 HOH A 131 1031 62 HOH HOH . K 6 HOH A 132 1032 63 HOH HOH . K 6 HOH A 133 1033 65 HOH HOH . K 6 HOH A 134 1034 260 HOH HOH . K 6 HOH A 135 1035 176 HOH HOH . K 6 HOH A 136 1036 105 HOH HOH . K 6 HOH A 137 1037 43 HOH HOH . K 6 HOH A 138 1038 33 HOH HOH . K 6 HOH A 139 1039 177 HOH HOH . K 6 HOH A 140 1040 235 HOH HOH . K 6 HOH A 141 1041 173 HOH HOH . K 6 HOH A 142 1042 254 HOH HOH . K 6 HOH A 143 1043 179 HOH HOH . K 6 HOH A 144 1044 205 HOH HOH . K 6 HOH A 145 1045 154 HOH HOH . K 6 HOH A 146 1046 251 HOH HOH . K 6 HOH A 147 1047 48 HOH HOH . K 6 HOH A 148 1048 170 HOH HOH . L 6 HOH B 1 901 200 HOH HOH . L 6 HOH B 2 902 146 HOH HOH . L 6 HOH B 3 903 207 HOH HOH . L 6 HOH B 4 904 195 HOH HOH . L 6 HOH B 5 905 102 HOH HOH . L 6 HOH B 6 906 77 HOH HOH . L 6 HOH B 7 907 72 HOH HOH . L 6 HOH B 8 908 83 HOH HOH . L 6 HOH B 9 909 131 HOH HOH . L 6 HOH B 10 910 223 HOH HOH . L 6 HOH B 11 911 244 HOH HOH . L 6 HOH B 12 912 153 HOH HOH . L 6 HOH B 13 913 194 HOH HOH . L 6 HOH B 14 914 222 HOH HOH . L 6 HOH B 15 915 202 HOH HOH . L 6 HOH B 16 916 164 HOH HOH . L 6 HOH B 17 917 204 HOH HOH . L 6 HOH B 18 918 196 HOH HOH . L 6 HOH B 19 919 103 HOH HOH . L 6 HOH B 20 920 91 HOH HOH . L 6 HOH B 21 921 85 HOH HOH . L 6 HOH B 22 922 93 HOH HOH . L 6 HOH B 23 923 184 HOH HOH . L 6 HOH B 24 924 217 HOH HOH . L 6 HOH B 25 925 197 HOH HOH . L 6 HOH B 26 926 225 HOH HOH . L 6 HOH B 27 927 86 HOH HOH . L 6 HOH B 28 928 270 HOH HOH . L 6 HOH B 29 929 97 HOH HOH . L 6 HOH B 30 930 193 HOH HOH . L 6 HOH B 31 931 138 HOH HOH . L 6 HOH B 32 932 104 HOH HOH . L 6 HOH B 33 933 250 HOH HOH . L 6 HOH B 34 934 198 HOH HOH . L 6 HOH B 35 935 110 HOH HOH . L 6 HOH B 36 936 147 HOH HOH . L 6 HOH B 37 937 224 HOH HOH . L 6 HOH B 38 938 209 HOH HOH . L 6 HOH B 39 939 82 HOH HOH . L 6 HOH B 40 940 257 HOH HOH . L 6 HOH B 41 941 201 HOH HOH . L 6 HOH B 42 942 245 HOH HOH . L 6 HOH B 43 943 190 HOH HOH . L 6 HOH B 44 944 159 HOH HOH . L 6 HOH B 45 945 263 HOH HOH . L 6 HOH B 46 946 181 HOH HOH . L 6 HOH B 47 947 212 HOH HOH . L 6 HOH B 48 948 106 HOH HOH . L 6 HOH B 49 949 144 HOH HOH . L 6 HOH B 50 950 231 HOH HOH . L 6 HOH B 51 951 90 HOH HOH . L 6 HOH B 52 952 262 HOH HOH . L 6 HOH B 53 953 237 HOH HOH . L 6 HOH B 54 954 274 HOH HOH . L 6 HOH B 55 955 101 HOH HOH . L 6 HOH B 56 956 265 HOH HOH . L 6 HOH B 57 957 84 HOH HOH . L 6 HOH B 58 958 182 HOH HOH . L 6 HOH B 59 959 266 HOH HOH . L 6 HOH B 60 960 268 HOH HOH . L 6 HOH B 61 961 139 HOH HOH . L 6 HOH B 62 962 208 HOH HOH . L 6 HOH B 63 963 133 HOH HOH . L 6 HOH B 64 964 187 HOH HOH . L 6 HOH B 65 965 241 HOH HOH . L 6 HOH B 66 966 247 HOH HOH . L 6 HOH B 67 967 234 HOH HOH . L 6 HOH B 68 968 255 HOH HOH . L 6 HOH B 69 969 246 HOH HOH . L 6 HOH B 70 970 243 HOH HOH . L 6 HOH B 71 971 216 HOH HOH . L 6 HOH B 72 972 214 HOH HOH . L 6 HOH B 73 973 229 HOH HOH . L 6 HOH B 74 974 242 HOH HOH . L 6 HOH B 75 975 189 HOH HOH . L 6 HOH B 76 976 119 HOH HOH . L 6 HOH B 77 977 269 HOH HOH . L 6 HOH B 78 978 199 HOH HOH . L 6 HOH B 79 979 166 HOH HOH . L 6 HOH B 80 980 186 HOH HOH . L 6 HOH B 81 981 213 HOH HOH . L 6 HOH B 82 982 155 HOH HOH . L 6 HOH B 83 983 112 HOH HOH . L 6 HOH B 84 984 158 HOH HOH . L 6 HOH B 85 985 249 HOH HOH . L 6 HOH B 86 986 211 HOH HOH . L 6 HOH B 87 987 150 HOH HOH . L 6 HOH B 88 988 206 HOH HOH . L 6 HOH B 89 989 221 HOH HOH . L 6 HOH B 90 990 240 HOH HOH . L 6 HOH B 91 991 128 HOH HOH . L 6 HOH B 92 992 183 HOH HOH . L 6 HOH B 93 993 238 HOH HOH . L 6 HOH B 94 994 256 HOH HOH . L 6 HOH B 95 995 261 HOH HOH . L 6 HOH B 96 996 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . G 2 -17.625 -45.789 -48.02 1 54.16 ? FE1 SF4 801 B 1 HETATM 2 FE FE2 SF4 . . . G 2 -17.314 -46.752 -50.644 1 55.2 ? FE2 SF4 801 B 1 HETATM 3 FE FE3 SF4 . . . G 2 -18.067 -44.067 -50.17 1 54.05 ? FE3 SF4 801 B 1 HETATM 4 FE FE4 SF4 . . . G 2 -19.888 -46.152 -49.621 1 80.22 ? FE4 SF4 801 B 1 HETATM 5 S S1 SF4 . . . G 2 -19.043 -45.565 -51.729 1 61.29 ? S1 SF4 801 B 1 HETATM 6 S S2 SF4 . . . G 2 -19.367 -44.286 -48.245 1 61.8 ? S2 SF4 801 B 1 HETATM 7 S S3 SF4 . . . G 2 -18.42 -47.817 -48.849 1 57.66 ? S3 SF4 801 B 1 HETATM 8 S S4 SF4 . . . G 2 -16.046 -45.087 -49.573 1 53.64 ? S4 SF4 801 B 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #