data_6QKX
#
_model_server_result.job_id            RTtDzBowt3XZFFXFDFbusw 
_model_server_result.datetime_utc      '2024-10-19 05:32:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qkx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    6QKX 
#
_exptl.entry_id    6QKX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QKX 
_cell.length_a            176.86 
_cell.length_b            176.86 
_cell.length_c            49.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QKX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 18 1_555 A SG CYS 357 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc1 A SG CYS 367 A CYS 367 1_555 B FE3 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc2 A SG CYS 370 A CYS 370 1_555 B FE4 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc3 A SG CYS 374 A CYS 374 1_555 B FE1 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc4 A SG CYS 386 A CYS 386 1_555 B FE2 SF4 . A SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 174 n n 
N1 C10 FMN doub 175 n n 
C2 O2 FMN doub 176 n n 
C2 N3 FMN sing 177 n n 
N3 C4 FMN sing 178 n n 
N3 HN3 FMN sing 179 n n 
C4 O4 FMN doub 180 n n 
C4 C4A FMN sing 181 n n 
C4A N5 FMN doub 182 n n 
C4A C10 FMN sing 183 n n 
N5 C5A FMN sing 184 n n 
C5A C6 FMN doub 185 n y 
C5A C9A FMN sing 186 n y 
C6 C7 FMN sing 187 n y 
C6 H6 FMN sing 188 n n 
C7 C7M FMN sing 189 n n 
C7 C8 FMN doub 190 n y 
C7M HM71 FMN sing 191 n n 
C7M HM72 FMN sing 192 n n 
C7M HM73 FMN sing 193 n n 
C8 C8M FMN sing 194 n n 
C8 C9 FMN sing 195 n y 
C8M HM81 FMN sing 196 n n 
C8M HM82 FMN sing 197 n n 
C8M HM83 FMN sing 198 n n 
C9 C9A FMN doub 199 n y 
C9 H9 FMN sing 200 n n 
C9A N10 FMN sing 201 n n 
N10 C10 FMN sing 202 n n 
N10 C1' FMN sing 203 n n 
C1' C2' FMN sing 204 n n 
C1' "H1'1" FMN sing 205 n n 
C1' "H1'2" FMN sing 206 n n 
C2' O2' FMN sing 207 n n 
C2' C3' FMN sing 208 n n 
C2' H2' FMN sing 209 n n 
O2' HO2' FMN sing 210 n n 
C3' O3' FMN sing 211 n n 
C3' C4' FMN sing 212 n n 
C3' H3' FMN sing 213 n n 
O3' HO3' FMN sing 214 n n 
C4' O4' FMN sing 215 n n 
C4' C5' FMN sing 216 n n 
C4' H4' FMN sing 217 n n 
O4' HO4' FMN sing 218 n n 
C5' O5' FMN sing 219 n n 
C5' "H5'1" FMN sing 220 n n 
C5' "H5'2" FMN sing 221 n n 
O5' P FMN sing 222 n n 
P O1P FMN doub 223 n n 
P O2P FMN sing 224 n n 
P O3P FMN sing 225 n n 
O2P HOP2 FMN sing 226 n n 
O3P HOP3 FMN sing 227 n n 
#
_atom_sites.entry_id                     6QKX 
_atom_sites.fract_transf_matrix[1][1]    0.005654 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020317 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 801 700 SF4 SF4 . 
C 3 FAD A 1 802 701 FAD FAD . 
D 4 FMN A 1 803 702 FMN FMN . 
E 5 J5H A 1 804 703 J5H LIG . 
F 6 HOH A 1 901 8 HOH HOH . 
F 6 HOH A 2 902 711 HOH HOH . 
F 6 HOH A 3 903 708 HOH HOH . 
F 6 HOH A 4 904 713 HOH HOH . 
F 6 HOH A 5 905 709 HOH HOH . 
F 6 HOH A 6 906 9 HOH HOH . 
F 6 HOH A 7 907 704 HOH HOH . 
F 6 HOH A 8 908 14 HOH HOH . 
F 6 HOH A 9 909 705 HOH HOH . 
F 6 HOH A 10 910 706 HOH HOH . 
F 6 HOH A 11 911 13 HOH HOH . 
F 6 HOH A 12 912 7 HOH HOH . 
F 6 HOH A 13 913 3 HOH HOH . 
F 6 HOH A 14 914 6 HOH HOH . 
F 6 HOH A 15 915 10 HOH HOH . 
F 6 HOH A 16 916 19 HOH HOH . 
F 6 HOH A 17 917 5 HOH HOH . 
F 6 HOH A 18 918 4 HOH HOH . 
F 6 HOH A 19 919 20 HOH HOH . 
F 6 HOH A 20 920 1 HOH HOH . 
F 6 HOH A 21 921 12 HOH HOH . 
F 6 HOH A 22 922 18 HOH HOH . 
F 6 HOH A 23 923 16 HOH HOH . 
F 6 HOH A 24 924 17 HOH HOH . 
F 6 HOH A 25 925 11 HOH HOH . 
F 6 HOH A 26 926 15 HOH HOH . 
F 6 HOH A 27 927 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 4 13.262 -28.955 -6.611 1 57.73 ? N1 FMN 803 A 1 
HETATM 2 C C2 FMN . . . D 4 14.627 -28.823 -6.757 1 58.42 ? C2 FMN 803 A 1 
HETATM 3 O O2 FMN . . . D 4 15.368 -29.058 -5.804 1 60.56 ? O2 FMN 803 A 1 
HETATM 4 N N3 FMN . . . D 4 15.169 -28.435 -7.964 1 57 ? N3 FMN 803 A 1 
HETATM 5 C C4 FMN . . . D 4 14.346 -28.185 -9.036 1 56.1 ? C4 FMN 803 A 1 
HETATM 6 O O4 FMN . . . D 4 14.838 -27.84 -10.114 1 54.17 ? O4 FMN 803 A 1 
HETATM 7 C C4A FMN . . . D 4 12.968 -28.326 -8.884 1 58.45 ? C4A FMN 803 A 1 
HETATM 8 N N5 FMN . . . D 4 12.134 -28.084 -9.941 1 61.58 ? N5 FMN 803 A 1 
HETATM 9 C C5A FMN . . . D 4 10.77 -28.221 -9.817 1 64.38 ? C5A FMN 803 A 1 
HETATM 10 C C6 FMN . . . D 4 9.953 -27.949 -10.91 1 66.78 ? C6 FMN 803 A 1 
HETATM 11 C C7 FMN . . . D 4 8.574 -28.063 -10.804 1 67.89 ? C7 FMN 803 A 1 
HETATM 12 C C7M FMN . . . D 4 7.722 -27.781 -12.007 1 69.23 ? C7M FMN 803 A 1 
HETATM 13 C C8 FMN . . . D 4 8.017 -28.463 -9.596 1 68.49 ? C8 FMN 803 A 1 
HETATM 14 C C8M FMN . . . D 4 6.532 -28.591 -9.445 1 71.54 ? C8M FMN 803 A 1 
HETATM 15 C C9 FMN . . . D 4 8.836 -28.718 -8.501 1 65.83 ? C9 FMN 803 A 1 
HETATM 16 C C9A FMN . . . D 4 10.221 -28.614 -8.604 1 62.13 ? C9A FMN 803 A 1 
HETATM 17 N N10 FMN . . . D 4 11.058 -28.864 -7.529 1 57.3 ? N10 FMN 803 A 1 
HETATM 18 C C10 FMN . . . D 4 12.422 -28.713 -7.672 1 55.92 ? C10 FMN 803 A 1 
HETATM 19 C C1' FMN . . . D 4 10.5 -29.265 -6.197 1 57.35 ? C1' FMN 803 A 1 
HETATM 20 C C2' FMN . . . D 4 10.048 -27.969 -5.524 1 59.32 ? C2' FMN 803 A 1 
HETATM 21 O O2' FMN . . . D 4 11.173 -27.136 -5.36 1 59.18 ? O2' FMN 803 A 1 
HETATM 22 C C3' FMN . . . D 4 9.355 -28.169 -4.181 1 63.64 ? C3' FMN 803 A 1 
HETATM 23 O O3' FMN . . . D 4 10.299 -28.564 -3.225 1 63.28 ? O3' FMN 803 A 1 
HETATM 24 C C4' FMN . . . D 4 8.253 -29.209 -4.332 1 63.33 ? C4' FMN 803 A 1 
HETATM 25 O O4' FMN . . . D 4 7.594 -28.965 -5.555 1 65.17 ? O4' FMN 803 A 1 
HETATM 26 C C5' FMN . . . D 4 7.246 -29.176 -3.194 1 67.51 ? C5' FMN 803 A 1 
HETATM 27 O O5' FMN . . . D 4 7.233 -27.908 -2.578 1 66.17 ? O5' FMN 803 A 1 
HETATM 28 P P FMN . . . D 4 5.856 -27.093 -2.706 1 69 ? P FMN 803 A 1 
HETATM 29 O O1P FMN . . . D 4 4.789 -27.9 -2.016 1 65.38 ? O1P FMN 803 A 1 
HETATM 30 O O2P FMN . . . D 4 5.541 -26.999 -4.178 0.8 66.34 ? O2P FMN 803 A 1 
HETATM 31 O O3P FMN . . . D 4 5.938 -25.719 -2.066 1 65.93 ? O3P FMN 803 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#