data_6QKZ # _model_server_result.job_id sj8eGIpTc2N2cTJmR_aB2g _model_server_result.datetime_utc '2024-10-19 20:19:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":901}' # _entry.id 6QKZ # _exptl.entry_id 6QKZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 336.28 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-nitro-2,3-bis(oxidanylidene)-1,4-dihydrobenzo[f]quinoxaline-7-sulfonamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 Q N N ? 6 R N N ? 6 T N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 E 1 NAG G 600 NAG 4 n G NAG 2 E 2 NAG G 601 NAG 4 n G BMA 3 E 3 BMA G 602 BMA 5 n H NAG 1 F 1 NAG G 700 NAG 5 n H NAG 2 F 2 NAG G 701 NAG 5 n I NAG 1 G 1 NAG G 800 NAG 5 n I NAG 2 G 2 NAG G 801 NAG 5 n J NAG 1 H 1 NAG F 402 NAG 5 n J NAG 2 H 2 NAG F 403 NAG 4 n K NAG 1 K 1 NAG H 600 NAG 4 n K NAG 2 K 2 NAG H 601 NAG 4 n K BMA 3 K 3 BMA H 602 BMA 5 n L NAG 1 L 1 NAG H 700 NAG 5 n L NAG 2 L 2 NAG H 701 NAG 5 n M NAG 1 M 1 NAG H 800 NAG 5 n M NAG 2 M 2 NAG H 801 NAG 5 n N NAG 1 N 1 NAG E 402 NAG 5 n N NAG 2 N 2 NAG E 403 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 53 A ASN 45 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 A ND2 ASN 239 A ASN 231 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale3 A ND2 ASN 239 A ASN 231 1_555 H O5 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 A ND2 ASN 247 A ASN 239 1_555 P C1 NAG . A NAG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 A ND2 ASN 353 A ASN 345 1_555 I C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale6 A ND2 ASN 353 A ASN 345 1_555 I O5 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale7 B ND2 ASN 235 B ASN 235 1_555 J C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale8 C ND2 ASN 53 C ASN 45 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 C ND2 ASN 239 C ASN 231 1_555 L O5 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale10 C ND2 ASN 239 C ASN 231 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale11 C ND2 ASN 247 C ASN 239 1_555 S C1 NAG . C NAG 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 C ND2 ASN 353 C ASN 345 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale13 C ND2 ASN 353 C ASN 345 1_555 M O5 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale14 D ND2 ASN 235 D ASN 235 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale15 G O4 NAG . E NAG 1 1_555 G C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale16 G O4 NAG . E NAG 2 1_555 G C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale17 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale18 I O4 NAG . G NAG 1 1_555 I C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale19 J O4 NAG . H NAG 1 1_555 J C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale20 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale21 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale22 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale23 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale24 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C12 H8 N4 O6 S' _chem_comp.formula_weight 336.28 _chem_comp.id E2Q _chem_comp.mon_nstd_flag . _chem_comp.name 6-nitro-2,3-bis(oxidanylidene)-1,4-dihydrobenzo[f]quinoxaline-7-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QKZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 6 E2Q A 1 901 901 E2Q NBQ . P 7 NAG A 1 909 900 NAG NAG . Q 6 E2Q B 1 901 901 E2Q NBQ . R 6 E2Q C 1 901 901 E2Q NBQ . S 7 NAG C 1 909 900 NAG NAG . T 6 E2Q D 1 901 901 E2Q NBQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 E2Q . . . O 6 126.104 160.349 175.464 1 25 ? C01 E2Q 901 A 1 HETATM 2 C C02 E2Q . . . O 6 125.874 159.477 176.511 1 25 ? C02 E2Q 901 A 1 HETATM 3 C C03 E2Q . . . O 6 124.987 158.409 176.361 1 25 ? C03 E2Q 901 A 1 HETATM 4 C C04 E2Q . . . O 6 124.802 157.566 177.463 1 25 ? C04 E2Q 901 A 1 HETATM 5 C C05 E2Q . . . O 6 123.929 156.482 177.375 1 25 ? C05 E2Q 901 A 1 HETATM 6 C C06 E2Q . . . O 6 123.252 156.254 176.188 1 25 ? C06 E2Q 901 A 1 HETATM 7 C C07 E2Q . . . O 6 123.424 157.085 175.083 1 25 ? C07 E2Q 901 A 1 HETATM 8 C C08 E2Q . . . O 6 124.305 158.195 175.14 1 25 ? C08 E2Q 901 A 1 HETATM 9 C C09 E2Q . . . O 6 124.555 159.1 174.069 1 25 ? C09 E2Q 901 A 1 HETATM 10 C C10 E2Q . . . O 6 125.449 160.161 174.259 1 25 ? C10 E2Q 901 A 1 HETATM 11 C C19 E2Q . . . O 6 124.377 155.851 179.591 1 25 ? C19 E2Q 901 A 1 HETATM 12 C C21 E2Q . . . O 6 125.311 157.001 179.697 1 25 ? C21 E2Q 901 A 1 HETATM 13 N N14 E2Q . . . O 6 122.424 159.454 172.698 1 25 ? N14 E2Q 901 A 1 HETATM 14 N N15 E2Q . . . O 6 122.662 156.705 173.972 1 25 ? N15 E2Q 901 A 1 HETATM 15 N N18 E2Q . . . O 6 123.728 155.648 178.424 1 25 ? N18 E2Q 901 A 1 HETATM 16 N N23 E2Q . . . O 6 125.473 157.801 178.621 1 25 ? N23 E2Q 901 A 1 HETATM 17 O O12 E2Q . . . O 6 124.553 159.984 171.685 1 25 ? O12 E2Q 901 A 1 HETATM 18 O O13 E2Q . . . O 6 124.023 157.692 172.006 1 25 ? O13 E2Q 901 A 1 HETATM 19 O O16 E2Q . . . O 6 121.381 157.219 173.787 1 25 ? O16 E2Q 901 A 1 HETATM 20 O O17 E2Q . . . O 6 123.17 155.774 173.069 1 25 ? O17 E2Q 901 A 1 HETATM 21 O O20 E2Q . . . O 6 124.198 155.083 180.561 1 25 ? O20 E2Q 901 A 1 HETATM 22 O O22 E2Q . . . O 6 125.933 157.227 180.758 1 25 ? O22 E2Q 901 A 1 HETATM 23 S S11 E2Q . . . O 6 123.885 159.038 172.607 1 25 ? S11 E2Q 901 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #