data_6QL0
#
_model_server_result.job_id            WYksyKqfxp1q4cvXRLl96g 
_model_server_result.datetime_utc      '2024-11-14 23:47:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ql0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    6QL0 
#
_exptl.entry_id    6QL0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6QL0 
_cell.length_a            54.666 
_cell.length_b            54.666 
_cell.length_c            106.274 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QL0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 22 1_555 A SG CYS 160 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 48 A CYS 42 1_555 A SG CYS 64 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 A SG CYS 132 A CYS 128 1_555 A SG CYS 233 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 139 A CYS 136 1_555 A SG CYS 206 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf5 A SG CYS 171 A CYS 168 1_555 A SG CYS 185 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 196 A CYS 191 1_555 A SG CYS 220 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc1 A OE1 GLU 75 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc2 A O ASN 77 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc3 A O VAL 80 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc4 A OE2 GLU 85 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc5 B CA CA . A CA 301 1_555 L O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc6 B CA CA . A CA 301 1_555 L O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     6QL0 
_atom_sites.fract_transf_matrix[1][1]    0.018293 
_atom_sites.fract_transf_matrix[1][2]    0.010561 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00941 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 301 1 CA CA . 
C 3 EDO A 1 302 1 EDO EDO . 
D 3 EDO A 1 303 2 EDO EDO . 
E 3 EDO A 1 304 3 EDO EDO . 
F 3 EDO A 1 305 4 EDO EDO . 
G 3 EDO A 1 306 5 EDO EDO . 
H 4 DMS A 1 307 1 DMS DMS . 
I 4 DMS A 1 308 4 DMS DMS . 
J 5 J5K A 1 309 2 J5K XXX . 
K 6 SO4 A 1 310 3 SO4 SO4 . 
L 7 HOH A 1 401 210 HOH HOH . 
L 7 HOH A 2 402 113 HOH HOH . 
L 7 HOH A 3 403 75 HOH HOH . 
L 7 HOH A 4 404 166 HOH HOH . 
L 7 HOH A 5 405 73 HOH HOH . 
L 7 HOH A 6 406 116 HOH HOH . 
L 7 HOH A 7 407 128 HOH HOH . 
L 7 HOH A 8 408 8 HOH HOH . 
L 7 HOH A 9 409 125 HOH HOH . 
L 7 HOH A 10 410 178 HOH HOH . 
L 7 HOH A 11 411 54 HOH HOH . 
L 7 HOH A 12 412 183 HOH HOH . 
L 7 HOH A 13 413 130 HOH HOH . 
L 7 HOH A 14 414 191 HOH HOH . 
L 7 HOH A 15 415 48 HOH HOH . 
L 7 HOH A 16 416 86 HOH HOH . 
L 7 HOH A 17 417 124 HOH HOH . 
L 7 HOH A 18 418 83 HOH HOH . 
L 7 HOH A 19 419 143 HOH HOH . 
L 7 HOH A 20 420 82 HOH HOH . 
L 7 HOH A 21 421 92 HOH HOH . 
L 7 HOH A 22 422 29 HOH HOH . 
L 7 HOH A 23 423 112 HOH HOH . 
L 7 HOH A 24 424 127 HOH HOH . 
L 7 HOH A 25 425 9 HOH HOH . 
L 7 HOH A 26 426 193 HOH HOH . 
L 7 HOH A 27 427 144 HOH HOH . 
L 7 HOH A 28 428 64 HOH HOH . 
L 7 HOH A 29 429 89 HOH HOH . 
L 7 HOH A 30 430 205 HOH HOH . 
L 7 HOH A 31 431 30 HOH HOH . 
L 7 HOH A 32 432 155 HOH HOH . 
L 7 HOH A 33 433 17 HOH HOH . 
L 7 HOH A 34 434 42 HOH HOH . 
L 7 HOH A 35 435 157 HOH HOH . 
L 7 HOH A 36 436 196 HOH HOH . 
L 7 HOH A 37 437 51 HOH HOH . 
L 7 HOH A 38 438 206 HOH HOH . 
L 7 HOH A 39 439 4 HOH HOH . 
L 7 HOH A 40 440 10 HOH HOH . 
L 7 HOH A 41 441 135 HOH HOH . 
L 7 HOH A 42 442 56 HOH HOH . 
L 7 HOH A 43 443 45 HOH HOH . 
L 7 HOH A 44 444 154 HOH HOH . 
L 7 HOH A 45 445 136 HOH HOH . 
L 7 HOH A 46 446 137 HOH HOH . 
L 7 HOH A 47 447 2 HOH HOH . 
L 7 HOH A 48 448 13 HOH HOH . 
L 7 HOH A 49 449 170 HOH HOH . 
L 7 HOH A 50 450 67 HOH HOH . 
L 7 HOH A 51 451 25 HOH HOH . 
L 7 HOH A 52 452 153 HOH HOH . 
L 7 HOH A 53 453 115 HOH HOH . 
L 7 HOH A 54 454 23 HOH HOH . 
L 7 HOH A 55 455 18 HOH HOH . 
L 7 HOH A 56 456 34 HOH HOH . 
L 7 HOH A 57 457 15 HOH HOH . 
L 7 HOH A 58 458 43 HOH HOH . 
L 7 HOH A 59 459 27 HOH HOH . 
L 7 HOH A 60 460 98 HOH HOH . 
L 7 HOH A 61 461 97 HOH HOH . 
L 7 HOH A 62 462 39 HOH HOH . 
L 7 HOH A 63 463 87 HOH HOH . 
L 7 HOH A 64 464 3 HOH HOH . 
L 7 HOH A 65 465 26 HOH HOH . 
L 7 HOH A 66 466 171 HOH HOH . 
L 7 HOH A 67 467 186 HOH HOH . 
L 7 HOH A 68 468 40 HOH HOH . 
L 7 HOH A 69 469 208 HOH HOH . 
L 7 HOH A 70 470 36 HOH HOH . 
L 7 HOH A 71 471 105 HOH HOH . 
L 7 HOH A 72 472 46 HOH HOH . 
L 7 HOH A 73 473 78 HOH HOH . 
L 7 HOH A 74 474 14 HOH HOH . 
L 7 HOH A 75 475 24 HOH HOH . 
L 7 HOH A 76 476 202 HOH HOH . 
L 7 HOH A 77 477 123 HOH HOH . 
L 7 HOH A 78 478 53 HOH HOH . 
L 7 HOH A 79 479 16 HOH HOH . 
L 7 HOH A 80 480 33 HOH HOH . 
L 7 HOH A 81 481 104 HOH HOH . 
L 7 HOH A 82 482 108 HOH HOH . 
L 7 HOH A 83 483 90 HOH HOH . 
L 7 HOH A 84 484 37 HOH HOH . 
L 7 HOH A 85 485 20 HOH HOH . 
L 7 HOH A 86 486 57 HOH HOH . 
L 7 HOH A 87 487 132 HOH HOH . 
L 7 HOH A 88 488 72 HOH HOH . 
L 7 HOH A 89 489 85 HOH HOH . 
L 7 HOH A 90 490 44 HOH HOH . 
L 7 HOH A 91 491 141 HOH HOH . 
L 7 HOH A 92 492 19 HOH HOH . 
L 7 HOH A 93 493 74 HOH HOH . 
L 7 HOH A 94 494 55 HOH HOH . 
L 7 HOH A 95 495 71 HOH HOH . 
L 7 HOH A 96 496 194 HOH HOH . 
L 7 HOH A 97 497 197 HOH HOH . 
L 7 HOH A 98 498 58 HOH HOH . 
L 7 HOH A 99 499 199 HOH HOH . 
L 7 HOH A 100 500 80 HOH HOH . 
L 7 HOH A 101 501 76 HOH HOH . 
L 7 HOH A 102 502 111 HOH HOH . 
L 7 HOH A 103 503 209 HOH HOH . 
L 7 HOH A 104 504 189 HOH HOH . 
L 7 HOH A 105 505 179 HOH HOH . 
L 7 HOH A 106 506 77 HOH HOH . 
L 7 HOH A 107 507 60 HOH HOH . 
L 7 HOH A 108 508 177 HOH HOH . 
L 7 HOH A 109 509 62 HOH HOH . 
L 7 HOH A 110 510 93 HOH HOH . 
L 7 HOH A 111 511 63 HOH HOH . 
L 7 HOH A 112 512 35 HOH HOH . 
L 7 HOH A 113 513 31 HOH HOH . 
L 7 HOH A 114 514 11 HOH HOH . 
L 7 HOH A 115 515 198 HOH HOH . 
L 7 HOH A 116 516 81 HOH HOH . 
L 7 HOH A 117 517 174 HOH HOH . 
L 7 HOH A 118 518 204 HOH HOH . 
L 7 HOH A 119 519 52 HOH HOH . 
L 7 HOH A 120 520 38 HOH HOH . 
L 7 HOH A 121 521 109 HOH HOH . 
L 7 HOH A 122 522 149 HOH HOH . 
L 7 HOH A 123 523 195 HOH HOH . 
L 7 HOH A 124 524 59 HOH HOH . 
L 7 HOH A 125 525 79 HOH HOH . 
L 7 HOH A 126 526 182 HOH HOH . 
L 7 HOH A 127 527 107 HOH HOH . 
L 7 HOH A 128 528 96 HOH HOH . 
L 7 HOH A 129 529 133 HOH HOH . 
L 7 HOH A 130 530 50 HOH HOH . 
L 7 HOH A 131 531 21 HOH HOH . 
L 7 HOH A 132 532 103 HOH HOH . 
L 7 HOH A 133 533 47 HOH HOH . 
L 7 HOH A 134 534 94 HOH HOH . 
L 7 HOH A 135 535 180 HOH HOH . 
L 7 HOH A 136 536 165 HOH HOH . 
L 7 HOH A 137 537 140 HOH HOH . 
L 7 HOH A 138 538 61 HOH HOH . 
L 7 HOH A 139 539 173 HOH HOH . 
L 7 HOH A 140 540 65 HOH HOH . 
L 7 HOH A 141 541 32 HOH HOH . 
L 7 HOH A 142 542 200 HOH HOH . 
L 7 HOH A 143 543 207 HOH HOH . 
L 7 HOH A 144 544 119 HOH HOH . 
L 7 HOH A 145 545 126 HOH HOH . 
L 7 HOH A 146 546 91 HOH HOH . 
L 7 HOH A 147 547 131 HOH HOH . 
L 7 HOH A 148 548 22 HOH HOH . 
L 7 HOH A 149 549 84 HOH HOH . 
L 7 HOH A 150 550 121 HOH HOH . 
L 7 HOH A 151 551 175 HOH HOH . 
L 7 HOH A 152 552 176 HOH HOH . 
L 7 HOH A 153 553 142 HOH HOH . 
L 7 HOH A 154 554 201 HOH HOH . 
L 7 HOH A 155 555 70 HOH HOH . 
L 7 HOH A 156 556 122 HOH HOH . 
L 7 HOH A 157 557 160 HOH HOH . 
L 7 HOH A 158 558 139 HOH HOH . 
L 7 HOH A 159 559 203 HOH HOH . 
L 7 HOH A 160 560 187 HOH HOH . 
L 7 HOH A 161 561 138 HOH HOH . 
L 7 HOH A 162 562 151 HOH HOH . 
L 7 HOH A 163 563 190 HOH HOH . 
L 7 HOH A 164 564 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -4.063 -21.089 -18.682 1 26.04 ? C1 EDO 303 A 1 
HETATM 2 O O1 EDO . . . D 3 -5.264 -21.816 -18.998 1 23 ? O1 EDO 303 A 1 
HETATM 3 C C2 EDO . . . D 3 -3.719 -21.208 -17.197 1 23.61 ? C2 EDO 303 A 1 
HETATM 4 O O2 EDO . . . D 3 -4.821 -20.8 -16.386 1 26.23 ? O2 EDO 303 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#