data_6QL5 # _model_server_result.job_id rwFVHan7v10juEwMNC_spQ _model_server_result.datetime_utc '2024-12-16 11:09:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ql5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":2101}' # _entry.id 6QL5 # _exptl.entry_id 6QL5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QL5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 Y N N ? 5 Z N N ? 5 AA N N ? 5 BA N N ? 5 CA N N ? 5 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 180 A SER 180 1_555 S P24 PNS . A PNS 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? covale ? covale2 B OG SER 180 B SER 180 1_555 T P24 PNS . B PNS 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale3 C OG SER 180 C SER 180 1_555 U P24 PNS . C PNS 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale4 D OG SER 180 D SER 180 1_555 V P24 PNS . D PNS 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale5 E OG SER 180 E SER 180 1_555 W P24 PNS . E PNS 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale6 F OG SER 180 F SER 180 1_555 X P24 PNS . F PNS 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # _atom_sites.entry_id 6QL5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 4 PNS A 1 1901 180 PNS PSE . T 4 PNS B 1 1901 180 PNS PSE . U 4 PNS C 1 1901 180 PNS PSE . V 4 PNS D 1 1901 180 PNS PSE . W 4 PNS E 1 1901 180 PNS PSE . X 4 PNS F 1 1901 180 PNS PSE . Y 5 FMN G 1 2101 3051 FMN FMN . Z 5 FMN H 1 2101 3051 FMN FMN . AA 5 FMN I 1 2101 3051 FMN FMN . BA 5 FMN J 1 2101 3051 FMN FMN . CA 5 FMN K 1 2101 3051 FMN FMN . DA 5 FMN L 1 2101 3051 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . Y 5 238.107 178.546 89.479 1 79.13 ? N1 FMN 2101 G 1 HETATM 2 C C2 FMN . . . Y 5 237.085 179.239 89.977 1 76.52 ? C2 FMN 2101 G 1 HETATM 3 O O2 FMN . . . Y 5 235.933 178.923 89.575 1 83.95 ? O2 FMN 2101 G 1 HETATM 4 N N3 FMN . . . Y 5 237.284 180.201 90.889 1 71.85 ? N3 FMN 2101 G 1 HETATM 5 C C4 FMN . . . Y 5 238.488 180.521 91.35 1 68.5 ? C4 FMN 2101 G 1 HETATM 6 O O4 FMN . . . Y 5 238.645 181.425 92.184 1 79.16 ? O4 FMN 2101 G 1 HETATM 7 C C4A FMN . . . Y 5 239.65 179.793 90.863 1 74.33 ? C4A FMN 2101 G 1 HETATM 8 N N5 FMN . . . Y 5 240.887 180.054 91.262 1 60.29 ? N5 FMN 2101 G 1 HETATM 9 C C5A FMN . . . Y 5 241.87 179.335 90.733 1 60.37 ? C5A FMN 2101 G 1 HETATM 10 C C6 FMN . . . Y 5 243.133 179.648 91.137 1 65.11 ? C6 FMN 2101 G 1 HETATM 11 C C7 FMN . . . Y 5 244.227 179.002 90.631 1 59.28 ? C7 FMN 2101 G 1 HETATM 12 C C7M FMN . . . Y 5 245.518 179.455 91.136 1 66.54 ? C7M FMN 2101 G 1 HETATM 13 C C8 FMN . . . Y 5 244.083 177.945 89.632 1 69.74 ? C8 FMN 2101 G 1 HETATM 14 C C8M FMN . . . Y 5 245.297 177.232 89.116 1 68.5 ? C8M FMN 2101 G 1 HETATM 15 C C9 FMN . . . Y 5 242.801 177.595 89.225 1 71.05 ? C9 FMN 2101 G 1 HETATM 16 C C9A FMN . . . Y 5 241.694 178.257 89.746 1 63.55 ? C9A FMN 2101 G 1 HETATM 17 N N10 FMN . . . Y 5 240.413 177.994 89.331 1 69.56 ? N10 FMN 2101 G 1 HETATM 18 C C10 FMN . . . Y 5 239.374 178.753 89.864 1 79.51 ? C10 FMN 2101 G 1 HETATM 19 C C1' FMN . . . Y 5 240.103 176.983 88.35 1 73.23 ? C1' FMN 2101 G 1 HETATM 20 C C2' FMN . . . Y 5 240.255 177.613 86.988 1 65.81 ? C2' FMN 2101 G 1 HETATM 21 O O2' FMN . . . Y 5 239.213 178.565 86.902 1 68.99 ? O2' FMN 2101 G 1 HETATM 22 C C3' FMN . . . Y 5 240.179 176.523 85.92 1 66.66 ? C3' FMN 2101 G 1 HETATM 23 O O3' FMN . . . Y 5 239.111 175.589 86.162 1 61.75 ? O3' FMN 2101 G 1 HETATM 24 C C4' FMN . . . Y 5 241.484 175.714 85.906 1 67.69 ? C4' FMN 2101 G 1 HETATM 25 O O4' FMN . . . Y 5 242.654 176.451 86.25 1 62.05 ? O4' FMN 2101 G 1 HETATM 26 C C5' FMN . . . Y 5 241.786 175.174 84.545 1 65.17 ? C5' FMN 2101 G 1 HETATM 27 O O5' FMN . . . Y 5 242.543 173.993 84.763 1 60.58 ? O5' FMN 2101 G 1 HETATM 28 P P FMN . . . Y 5 244.085 173.955 84.416 1 62.36 ? P FMN 2101 G 1 HETATM 29 O O1P FMN . . . Y 5 244.257 172.465 84.462 1 58.28 ? O1P FMN 2101 G 1 HETATM 30 O O2P FMN . . . Y 5 244.453 174.653 83.089 1 62.08 ? O2P FMN 2101 G 1 HETATM 31 O O3P FMN . . . Y 5 244.515 174.718 85.617 1 67.12 ? O3P FMN 2101 G 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 148 _model_server_stats.create_model_time_ms 372 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #