data_6QL6 # _model_server_result.job_id Ve5EBrTKfet3P8YOX9Snrg _model_server_result.datetime_utc '2024-11-12 23:17:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ql6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1901}' # _entry.id 6QL6 # _exptl.entry_id 6QL6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 227.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{R})-4-azanyl-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QL6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 180 A SER 180 1_555 M P1 J8T . A J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale2 C OG SER 180 B SER 180 1_555 O P1 J8T . B J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale3 D OG SER 180 C SER 180 1_555 P P1 J8T . C J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale4 E OG SER 180 D SER 180 1_555 Q P1 J8T . D J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale5 F OG SER 180 E SER 180 1_555 R P1 J8T . E J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale6 G OG SER 180 F SER 180 1_555 S P1 J8T . F J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? # _chem_comp.formula 'C6 H14 N O6 P' _chem_comp.formula_weight 227.152 _chem_comp.id J8T _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{R})-4-azanyl-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 P1 J8T sing 225 n n P1 O4 J8T doub 226 n n P1 O5 J8T sing 227 n n O5 C4 J8T sing 228 n n C4 C5 J8T sing 229 n n C7 C5 J8T sing 230 n n C5 C8 J8T sing 231 n n C5 C6 J8T sing 232 n n C8 O6 J8T sing 233 n n C8 C9 J8T sing 234 n n O7 C9 J8T doub 235 n n C9 N2 J8T sing 236 n n C4 H1 J8T sing 237 n n C4 H2 J8T sing 238 n n C6 H3 J8T sing 239 n n C6 H4 J8T sing 240 n n C6 H5 J8T sing 241 n n C7 H6 J8T sing 242 n n C7 H7 J8T sing 243 n n C7 H8 J8T sing 244 n n O3 H9 J8T sing 245 n n O6 H11 J8T sing 246 n n C8 H12 J8T sing 247 n n N2 H13 J8T sing 248 n n N2 H14 J8T sing 249 n n P1 O1 J8T sing 250 n n O1 H10 J8T sing 251 n n # _atom_sites.entry_id 6QL6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 J8T A 1 1901 180 J8T GVL . N 4 FMN G 1 2101 3051 FMN FMN . O 3 J8T B 1 1901 180 J8T GVL . P 3 J8T C 1 1901 180 J8T GVL . Q 3 J8T D 1 1901 180 J8T GVL . R 3 J8T E 1 1901 180 J8T GVL . S 3 J8T F 1 1901 180 J8T GVL . T 4 FMN H 1 2101 3051 FMN FMN . U 4 FMN I 1 2101 3051 FMN FMN . V 4 FMN J 1 2101 3051 FMN FMN . W 4 FMN K 1 2101 3051 FMN FMN . X 4 FMN L 1 2101 3051 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 J8T . . . P 3 124.464 123.629 154.919 1 140 ? C4 J8T 1901 C 1 HETATM 2 C C5 J8T . . . P 3 123.676 124.285 156.081 1 140 ? C5 J8T 1901 C 1 HETATM 3 C C6 J8T . . . P 3 124.683 125.053 156.964 1 140 ? C6 J8T 1901 C 1 HETATM 4 C C7 J8T . . . P 3 122.699 125.323 155.482 1 140 ? C7 J8T 1901 C 1 HETATM 5 O O3 J8T . . . P 3 122.948 122.33 151.485 1 140 ? O3 J8T 1901 C 1 HETATM 6 O O4 J8T . . . P 3 124.832 121.38 153.003 1 140 ? O4 J8T 1901 C 1 HETATM 7 O O5 J8T . . . P 3 123.561 123.366 153.769 1 140 ? O5 J8T 1901 C 1 HETATM 8 P P1 J8T . . . P 3 124.077 122.563 152.461 1 140 ? P1 J8T 1901 C 1 HETATM 9 O O6 J8T . . . P 3 123.774 122.221 157.4 1 140 ? O6 J8T 1901 C 1 HETATM 10 O O7 J8T . . . P 3 120.83 123.783 158.104 1 140 ? O7 J8T 1901 C 1 HETATM 11 C C8 J8T . . . P 3 122.88 123.242 156.943 1 140 ? C8 J8T 1901 C 1 HETATM 12 C C9 J8T . . . P 3 122.068 123.727 158.161 1 140 ? C9 J8T 1901 C 1 HETATM 13 N N2 J8T . . . P 3 122.747 124.041 159.262 1 140 ? N2 J8T 1901 C 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 556 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #