data_6QL6
#
_model_server_result.job_id            sFa4Qj3Bn468Md-F1WQG8A 
_model_server_result.datetime_utc      '2024-11-12 23:15:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ql6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1901}' 
#
_entry.id    6QL6 
#
_exptl.entry_id    6QL6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              227.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(3~{R})-4-azanyl-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QL6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QL6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 180 A SER 180 1_555 M P1 J8T . A J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? 
covale ? covale2 C OG SER 180 B SER 180 1_555 O P1 J8T . B J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? 
covale ? covale3 D OG SER 180 C SER 180 1_555 P P1 J8T . C J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? 
covale ? covale4 E OG SER 180 D SER 180 1_555 Q P1 J8T . D J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? 
covale ? covale5 F OG SER 180 E SER 180 1_555 R P1 J8T . E J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? 
covale ? covale6 G OG SER 180 F SER 180 1_555 S P1 J8T . F J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? 
#
_chem_comp.formula           'C6 H14 N O6 P' 
_chem_comp.formula_weight    227.152 
_chem_comp.id                J8T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(3~{R})-4-azanyl-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 P1 J8T sing 225 n n 
P1 O4 J8T doub 226 n n 
P1 O5 J8T sing 227 n n 
O5 C4 J8T sing 228 n n 
C4 C5 J8T sing 229 n n 
C7 C5 J8T sing 230 n n 
C5 C8 J8T sing 231 n n 
C5 C6 J8T sing 232 n n 
C8 O6 J8T sing 233 n n 
C8 C9 J8T sing 234 n n 
O7 C9 J8T doub 235 n n 
C9 N2 J8T sing 236 n n 
C4 H1 J8T sing 237 n n 
C4 H2 J8T sing 238 n n 
C6 H3 J8T sing 239 n n 
C6 H4 J8T sing 240 n n 
C6 H5 J8T sing 241 n n 
C7 H6 J8T sing 242 n n 
C7 H7 J8T sing 243 n n 
C7 H8 J8T sing 244 n n 
O3 H9 J8T sing 245 n n 
O6 H11 J8T sing 246 n n 
C8 H12 J8T sing 247 n n 
N2 H13 J8T sing 248 n n 
N2 H14 J8T sing 249 n n 
P1 O1 J8T sing 250 n n 
O1 H10 J8T sing 251 n n 
#
_atom_sites.entry_id                     6QL6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 J8T A 1 1901 180 J8T GVL . 
N 4 FMN G 1 2101 3051 FMN FMN . 
O 3 J8T B 1 1901 180 J8T GVL . 
P 3 J8T C 1 1901 180 J8T GVL . 
Q 3 J8T D 1 1901 180 J8T GVL . 
R 3 J8T E 1 1901 180 J8T GVL . 
S 3 J8T F 1 1901 180 J8T GVL . 
T 4 FMN H 1 2101 3051 FMN FMN . 
U 4 FMN I 1 2101 3051 FMN FMN . 
V 4 FMN J 1 2101 3051 FMN FMN . 
W 4 FMN K 1 2101 3051 FMN FMN . 
X 4 FMN L 1 2101 3051 FMN FMN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 J8T . . . S 3 231.976 185.706 184.411 1 140 ? C4 J8T 1901 F 1 
HETATM 2 C C5 J8T . . . S 3 231.817 186.707 183.239 1 140 ? C5 J8T 1901 F 1 
HETATM 3 C C6 J8T . . . S 3 230.653 186.218 182.351 1 140 ? C6 J8T 1901 F 1 
HETATM 4 C C7 J8T . . . S 3 231.411 188.079 183.822 1 140 ? C7 J8T 1901 F 1 
HETATM 5 O O3 J8T . . . S 3 233.845 186.382 187.851 1 140 ? O3 J8T 1901 F 1 
HETATM 6 O O4 J8T . . . S 3 233.742 184.277 186.337 1 140 ? O4 J8T 1901 F 1 
HETATM 7 O O5 J8T . . . S 3 232.65 186.362 185.562 1 140 ? O5 J8T 1901 F 1 
HETATM 8 P P1 J8T . . . S 3 233.084 185.519 186.873 1 140 ? P1 J8T 1901 F 1 
HETATM 9 O O6 J8T . . . S 3 233.56 185.566 181.944 1 140 ? O6 J8T 1901 F 1 
HETATM 10 O O7 J8T . . . S 3 233.706 188.89 181.212 1 140 ? O7 J8T 1901 F 1 
HETATM 11 C C8 J8T . . . S 3 233.126 186.859 182.387 1 140 ? C8 J8T 1901 F 1 
HETATM 12 C C9 J8T . . . S 3 233.129 187.793 181.16 1 140 ? C9 J8T 1901 F 1 
HETATM 13 N N2 J8T . . . S 3 232.525 187.355 180.058 1 140 ? N2 J8T 1901 F 1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    644 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#