data_6QL6 # _model_server_result.job_id 8ZzU4ikg9WsN7JKkRk7WAQ _model_server_result.datetime_utc '2024-11-12 23:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ql6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":2101}' # _entry.id 6QL6 # _exptl.entry_id 6QL6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QL6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 180 A SER 180 1_555 M P1 J8T . A J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale2 C OG SER 180 B SER 180 1_555 O P1 J8T . B J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale3 D OG SER 180 C SER 180 1_555 P P1 J8T . C J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale4 E OG SER 180 D SER 180 1_555 Q P1 J8T . D J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale5 F OG SER 180 E SER 180 1_555 R P1 J8T . E J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale6 G OG SER 180 F SER 180 1_555 S P1 J8T . F J8T 1901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6QL6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 J8T A 1 1901 180 J8T GVL . N 4 FMN G 1 2101 3051 FMN FMN . O 3 J8T B 1 1901 180 J8T GVL . P 3 J8T C 1 1901 180 J8T GVL . Q 3 J8T D 1 1901 180 J8T GVL . R 3 J8T E 1 1901 180 J8T GVL . S 3 J8T F 1 1901 180 J8T GVL . T 4 FMN H 1 2101 3051 FMN FMN . U 4 FMN I 1 2101 3051 FMN FMN . V 4 FMN J 1 2101 3051 FMN FMN . W 4 FMN K 1 2101 3051 FMN FMN . X 4 FMN L 1 2101 3051 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . T 4 144.143 102.715 89.349 1 87.67 ? N1 FMN 2101 H 1 HETATM 2 C C2 FMN . . . T 4 145.279 103.26 89.826 1 91.65 ? C2 FMN 2101 H 1 HETATM 3 O O2 FMN . . . T 4 145.617 104.382 89.37 1 106.66 ? O2 FMN 2101 H 1 HETATM 4 N N3 FMN . . . T 4 146.022 102.669 90.772 1 84.34 ? N3 FMN 2101 H 1 HETATM 5 C C4 FMN . . . T 4 145.678 101.495 91.307 1 89.48 ? C4 FMN 2101 H 1 HETATM 6 O O4 FMN . . . T 4 146.369 100.94 92.19 1 93.77 ? O4 FMN 2101 H 1 HETATM 7 C C4A FMN . . . T 4 144.437 100.861 90.835 1 85.72 ? C4A FMN 2101 H 1 HETATM 8 N N5 FMN . . . T 4 144.02 99.696 91.304 1 76.11 ? N5 FMN 2101 H 1 HETATM 9 C C5A FMN . . . T 4 142.909 99.127 90.855 1 67.84 ? C5A FMN 2101 H 1 HETATM 10 C C6 FMN . . . T 4 142.588 97.908 91.353 1 71.94 ? C6 FMN 2101 H 1 HETATM 11 C C7 FMN . . . T 4 141.48 97.251 90.909 1 77.76 ? C7 FMN 2101 H 1 HETATM 12 C C7M FMN . . . T 4 141.142 95.908 91.485 1 84.54 ? C7M FMN 2101 H 1 HETATM 13 C C8 FMN . . . T 4 140.629 97.872 89.882 1 75.88 ? C8 FMN 2101 H 1 HETATM 14 C C8M FMN . . . T 4 139.423 97.159 89.406 1 80.97 ? C8M FMN 2101 H 1 HETATM 15 C C9 FMN . . . T 4 140.936 99.095 89.369 1 76.55 ? C9 FMN 2101 H 1 HETATM 16 C C9A FMN . . . T 4 142.085 99.741 89.811 1 78.23 ? C9A FMN 2101 H 1 HETATM 17 N N10 FMN . . . T 4 142.516 100.966 89.306 1 74.89 ? N10 FMN 2101 H 1 HETATM 18 C C10 FMN . . . T 4 143.678 101.549 89.794 1 81.27 ? C10 FMN 2101 H 1 HETATM 19 C C1' FMN . . . T 4 141.761 101.63 88.293 1 77.72 ? C1' FMN 2101 H 1 HETATM 20 C C2' FMN . . . T 4 142.151 100.985 86.988 1 75.28 ? C2' FMN 2101 H 1 HETATM 21 O O2' FMN . . . T 4 143.492 101.38 86.727 1 84.59 ? O2' FMN 2101 H 1 HETATM 22 C C3' FMN . . . T 4 141.194 101.49 85.915 1 78.06 ? C3' FMN 2101 H 1 HETATM 23 O O3' FMN . . . T 4 140.964 102.932 86.032 1 74.9 ? O3' FMN 2101 H 1 HETATM 24 C C4' FMN . . . T 4 139.877 100.733 85.985 1 71.99 ? C4' FMN 2101 H 1 HETATM 25 O O4' FMN . . . T 4 140.079 99.359 86.182 1 74.31 ? O4' FMN 2101 H 1 HETATM 26 C C5' FMN . . . T 4 139.136 100.769 84.687 1 75.33 ? C5' FMN 2101 H 1 HETATM 27 O O5' FMN . . . T 4 137.779 100.488 84.964 1 69.01 ? O5' FMN 2101 H 1 HETATM 28 P P FMN . . . T 4 137.25 99.004 84.834 1 67.56 ? P FMN 2101 H 1 HETATM 29 O O1P FMN . . . T 4 135.757 99.16 84.797 1 68.24 ? O1P FMN 2101 H 1 HETATM 30 O O2P FMN . . . T 4 137.833 98.326 83.596 1 79.12 ? O2P FMN 2101 H 1 HETATM 31 O O3P FMN . . . T 4 137.756 98.443 86.122 1 69.96 ? O3P FMN 2101 H 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 226 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #