data_6QLK # _model_server_result.job_id dqfsbMWlnaDRXsA59MFA_Q _model_server_result.datetime_utc '2024-11-07 06:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qlk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6QLK # _exptl.entry_id 6QLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QLK _cell.length_a 141.751 _cell.length_b 141.751 _cell.length_c 141.751 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall 'F 2 2 3' _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -141.751 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -141.751 0 5 'crystal symmetry operation' 17_545 z,x-1/2,y+1/2 0 0 1 1 0 0 0 1 0 0 -70.8755 70.8755 6 'crystal symmetry operation' 18_544 z,-x-1/2,-y-1/2 0 0 1 -1 0 0 0 -1 0 0 -70.8755 -70.8755 7 'crystal symmetry operation' 19_545 -z,-x-1/2,y+1/2 0 0 -1 -1 0 0 0 1 0 0 -70.8755 70.8755 8 'crystal symmetry operation' 20_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -70.8755 -70.8755 9 'crystal symmetry operation' 45_545 y+1/2,z-1/2,x 0 1 0 0 0 1 1 0 0 70.8755 -70.8755 0 10 'crystal symmetry operation' 46_445 -y-1/2,z-1/2,-x 0 -1 0 0 0 1 -1 0 0 -70.8755 -70.8755 0 11 'crystal symmetry operation' 47_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 70.8755 -70.8755 0 12 'crystal symmetry operation' 48_445 -y-1/2,-z-1/2,x 0 -1 0 0 0 -1 1 0 0 -70.8755 -70.8755 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 138 A ASN 117 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 D NA NA . A NA 303 1_555 E O HOH . A HOH 403 18_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc3 D NA NA . A NA 303 1_555 E O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 434 18_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 481 18_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 D NA NA . A NA 303 1_555 E O HOH . A HOH 486 18_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QLK _atom_sites.fract_transf_matrix[1][1] 0.007055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4LU A 1 301 301 4LU 4LU . C 3 PO4 A 1 302 1 PO4 PO4 . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 95 HOH HOH . E 5 HOH A 2 402 88 HOH HOH . E 5 HOH A 3 403 80 HOH HOH . E 5 HOH A 4 404 59 HOH HOH . E 5 HOH A 5 405 72 HOH HOH . E 5 HOH A 6 406 23 HOH HOH . E 5 HOH A 7 407 49 HOH HOH . E 5 HOH A 8 408 40 HOH HOH . E 5 HOH A 9 409 102 HOH HOH . E 5 HOH A 10 410 39 HOH HOH . E 5 HOH A 11 411 149 HOH HOH . E 5 HOH A 12 412 110 HOH HOH . E 5 HOH A 13 413 55 HOH HOH . E 5 HOH A 14 414 67 HOH HOH . E 5 HOH A 15 415 27 HOH HOH . E 5 HOH A 16 416 71 HOH HOH . E 5 HOH A 17 417 62 HOH HOH . E 5 HOH A 18 418 79 HOH HOH . E 5 HOH A 19 419 53 HOH HOH . E 5 HOH A 20 420 57 HOH HOH . E 5 HOH A 21 421 105 HOH HOH . E 5 HOH A 22 422 143 HOH HOH . E 5 HOH A 23 423 9 HOH HOH . E 5 HOH A 24 424 86 HOH HOH . E 5 HOH A 25 425 139 HOH HOH . E 5 HOH A 26 426 123 HOH HOH . E 5 HOH A 27 427 15 HOH HOH . E 5 HOH A 28 428 37 HOH HOH . E 5 HOH A 29 429 107 HOH HOH . E 5 HOH A 30 430 52 HOH HOH . E 5 HOH A 31 431 85 HOH HOH . E 5 HOH A 32 432 78 HOH HOH . E 5 HOH A 33 433 28 HOH HOH . E 5 HOH A 34 434 63 HOH HOH . E 5 HOH A 35 435 4 HOH HOH . E 5 HOH A 36 436 22 HOH HOH . E 5 HOH A 37 437 38 HOH HOH . E 5 HOH A 38 438 2 HOH HOH . E 5 HOH A 39 439 84 HOH HOH . E 5 HOH A 40 440 21 HOH HOH . E 5 HOH A 41 441 46 HOH HOH . E 5 HOH A 42 442 47 HOH HOH . E 5 HOH A 43 443 14 HOH HOH . E 5 HOH A 44 444 61 HOH HOH . E 5 HOH A 45 445 45 HOH HOH . E 5 HOH A 46 446 60 HOH HOH . E 5 HOH A 47 447 8 HOH HOH . E 5 HOH A 48 448 31 HOH HOH . E 5 HOH A 49 449 5 HOH HOH . E 5 HOH A 50 450 44 HOH HOH . E 5 HOH A 51 451 120 HOH HOH . E 5 HOH A 52 452 7 HOH HOH . E 5 HOH A 53 453 50 HOH HOH . E 5 HOH A 54 454 18 HOH HOH . E 5 HOH A 55 455 33 HOH HOH . E 5 HOH A 56 456 12 HOH HOH . E 5 HOH A 57 457 11 HOH HOH . E 5 HOH A 58 458 103 HOH HOH . E 5 HOH A 59 459 24 HOH HOH . E 5 HOH A 60 460 109 HOH HOH . E 5 HOH A 61 461 76 HOH HOH . E 5 HOH A 62 462 128 HOH HOH . E 5 HOH A 63 463 29 HOH HOH . E 5 HOH A 64 464 17 HOH HOH . E 5 HOH A 65 465 77 HOH HOH . E 5 HOH A 66 466 20 HOH HOH . E 5 HOH A 67 467 75 HOH HOH . E 5 HOH A 68 468 6 HOH HOH . E 5 HOH A 69 469 16 HOH HOH . E 5 HOH A 70 470 30 HOH HOH . E 5 HOH A 71 471 64 HOH HOH . E 5 HOH A 72 472 89 HOH HOH . E 5 HOH A 73 473 54 HOH HOH . E 5 HOH A 74 474 69 HOH HOH . E 5 HOH A 75 475 13 HOH HOH . E 5 HOH A 76 476 117 HOH HOH . E 5 HOH A 77 477 10 HOH HOH . E 5 HOH A 78 478 36 HOH HOH . E 5 HOH A 79 479 1 HOH HOH . E 5 HOH A 80 480 32 HOH HOH . E 5 HOH A 81 481 73 HOH HOH . E 5 HOH A 82 482 135 HOH HOH . E 5 HOH A 83 483 83 HOH HOH . E 5 HOH A 84 484 56 HOH HOH . E 5 HOH A 85 485 92 HOH HOH . E 5 HOH A 86 486 19 HOH HOH . E 5 HOH A 87 487 104 HOH HOH . E 5 HOH A 88 488 137 HOH HOH . E 5 HOH A 89 489 115 HOH HOH . E 5 HOH A 90 490 100 HOH HOH . E 5 HOH A 91 491 127 HOH HOH . E 5 HOH A 92 492 58 HOH HOH . E 5 HOH A 93 493 3 HOH HOH . E 5 HOH A 94 494 90 HOH HOH . E 5 HOH A 95 495 99 HOH HOH . E 5 HOH A 96 496 101 HOH HOH . E 5 HOH A 97 497 93 HOH HOH . E 5 HOH A 98 498 147 HOH HOH . E 5 HOH A 99 499 68 HOH HOH . E 5 HOH A 100 500 132 HOH HOH . E 5 HOH A 101 501 66 HOH HOH . E 5 HOH A 102 502 98 HOH HOH . E 5 HOH A 103 503 96 HOH HOH . E 5 HOH A 104 504 146 HOH HOH . E 5 HOH A 105 505 82 HOH HOH . E 5 HOH A 106 506 35 HOH HOH . E 5 HOH A 107 507 26 HOH HOH . E 5 HOH A 108 508 42 HOH HOH . E 5 HOH A 109 509 122 HOH HOH . E 5 HOH A 110 510 124 HOH HOH . E 5 HOH A 111 511 34 HOH HOH . E 5 HOH A 112 512 125 HOH HOH . E 5 HOH A 113 513 129 HOH HOH . E 5 HOH A 114 514 25 HOH HOH . E 5 HOH A 115 515 116 HOH HOH . E 5 HOH A 116 516 136 HOH HOH . E 5 HOH A 117 517 97 HOH HOH . E 5 HOH A 118 518 94 HOH HOH . E 5 HOH A 119 519 41 HOH HOH . E 5 HOH A 120 520 108 HOH HOH . E 5 HOH A 121 521 91 HOH HOH . E 5 HOH A 122 522 118 HOH HOH . E 5 HOH A 123 523 121 HOH HOH . E 5 HOH A 124 524 51 HOH HOH . E 5 HOH A 125 525 106 HOH HOH . E 5 HOH A 126 526 112 HOH HOH . E 5 HOH A 127 527 126 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -13.79 _atom_site.Cartn_y -57.286 _atom_site.Cartn_z -20.643 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #