data_6QLL # _model_server_result.job_id btV-bl8bml38OhWktnytrQ _model_server_result.datetime_utc '2024-11-28 16:05:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6QLL # _exptl.entry_id 6QLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QLL _cell.length_a 142.033 _cell.length_b 142.033 _cell.length_c 142.033 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall 'F 2 2 3' _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -142.033 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -142.033 0 5 'crystal symmetry operation' 17_545 z,x-1/2,y+1/2 0 0 1 1 0 0 0 1 0 0 -71.0165 71.0165 6 'crystal symmetry operation' 18_544 z,-x-1/2,-y-1/2 0 0 1 -1 0 0 0 -1 0 0 -71.0165 -71.0165 7 'crystal symmetry operation' 19_545 -z,-x-1/2,y+1/2 0 0 -1 -1 0 0 0 1 0 0 -71.0165 71.0165 8 'crystal symmetry operation' 20_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -71.0165 -71.0165 9 'crystal symmetry operation' 45_545 y+1/2,z-1/2,x 0 1 0 0 0 1 1 0 0 71.0165 -71.0165 0 10 'crystal symmetry operation' 46_445 -y-1/2,z-1/2,-x 0 -1 0 0 0 1 -1 0 0 -71.0165 -71.0165 0 11 'crystal symmetry operation' 47_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 71.0165 -71.0165 0 12 'crystal symmetry operation' 48_445 -y-1/2,-z-1/2,x 0 -1 0 0 0 -1 1 0 0 -71.0165 -71.0165 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O CYS 137 A CYS 116 1_555 D NA NA . A NA 403 18_544 ? B ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc2 A OD1 ASN 138 A ASN 117 1_555 D NA NA . A NA 403 18_544 ? A ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 A OD1 ASN 138 A ASN 117 1_555 D NA NA . A NA 403 18_544 ? B ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc4 D NA NA . A NA 403 1_555 F O HOH . A HOH 523 48_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 D NA NA . A NA 403 1_555 F O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 D NA NA . A NA 403 1_555 F O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc7 D NA NA . A NA 403 1_555 F O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QLL _atom_sites.fract_transf_matrix[1][1] 0.007041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4LR A 1 401 401 4LR 4LR . C 3 FNR A 1 402 501 FNR FNR . D 4 NA A 1 403 1 NA NA . E 5 SO4 A 1 404 1 SO4 SO4 . F 6 HOH A 1 501 170 HOH HOH . F 6 HOH A 2 502 98 HOH HOH . F 6 HOH A 3 503 149 HOH HOH . F 6 HOH A 4 504 95 HOH HOH . F 6 HOH A 5 505 74 HOH HOH . F 6 HOH A 6 506 2 HOH HOH . F 6 HOH A 7 507 131 HOH HOH . F 6 HOH A 8 508 111 HOH HOH . F 6 HOH A 9 509 115 HOH HOH . F 6 HOH A 10 510 163 HOH HOH . F 6 HOH A 11 511 184 HOH HOH . F 6 HOH A 12 512 73 HOH HOH . F 6 HOH A 13 513 65 HOH HOH . F 6 HOH A 14 514 22 HOH HOH . F 6 HOH A 15 515 117 HOH HOH . F 6 HOH A 16 516 21 HOH HOH . F 6 HOH A 17 517 92 HOH HOH . F 6 HOH A 18 518 91 HOH HOH . F 6 HOH A 19 519 181 HOH HOH . F 6 HOH A 20 520 156 HOH HOH . F 6 HOH A 21 521 55 HOH HOH . F 6 HOH A 22 522 46 HOH HOH . F 6 HOH A 23 523 43 HOH HOH . F 6 HOH A 24 524 42 HOH HOH . F 6 HOH A 25 525 36 HOH HOH . F 6 HOH A 26 526 162 HOH HOH . F 6 HOH A 27 527 103 HOH HOH . F 6 HOH A 28 528 195 HOH HOH . F 6 HOH A 29 529 7 HOH HOH . F 6 HOH A 30 530 15 HOH HOH . F 6 HOH A 31 531 121 HOH HOH . F 6 HOH A 32 532 84 HOH HOH . F 6 HOH A 33 533 72 HOH HOH . F 6 HOH A 34 534 3 HOH HOH . F 6 HOH A 35 535 53 HOH HOH . F 6 HOH A 36 536 50 HOH HOH . F 6 HOH A 37 537 134 HOH HOH . F 6 HOH A 38 538 40 HOH HOH . F 6 HOH A 39 539 27 HOH HOH . F 6 HOH A 40 540 11 HOH HOH . F 6 HOH A 41 541 58 HOH HOH . F 6 HOH A 42 542 183 HOH HOH . F 6 HOH A 43 543 100 HOH HOH . F 6 HOH A 44 544 17 HOH HOH . F 6 HOH A 45 545 67 HOH HOH . F 6 HOH A 46 546 119 HOH HOH . F 6 HOH A 47 547 194 HOH HOH . F 6 HOH A 48 548 145 HOH HOH . F 6 HOH A 49 549 52 HOH HOH . F 6 HOH A 50 550 104 HOH HOH . F 6 HOH A 51 551 118 HOH HOH . F 6 HOH A 52 552 19 HOH HOH . F 6 HOH A 53 553 16 HOH HOH . F 6 HOH A 54 554 59 HOH HOH . F 6 HOH A 55 555 14 HOH HOH . F 6 HOH A 56 556 23 HOH HOH . F 6 HOH A 57 557 153 HOH HOH . F 6 HOH A 58 558 5 HOH HOH . F 6 HOH A 59 559 158 HOH HOH . F 6 HOH A 60 560 47 HOH HOH . F 6 HOH A 61 561 6 HOH HOH . F 6 HOH A 62 562 76 HOH HOH . F 6 HOH A 63 563 151 HOH HOH . F 6 HOH A 64 564 9 HOH HOH . F 6 HOH A 65 565 81 HOH HOH . F 6 HOH A 66 566 35 HOH HOH . F 6 HOH A 67 567 71 HOH HOH . F 6 HOH A 68 568 25 HOH HOH . F 6 HOH A 69 569 114 HOH HOH . F 6 HOH A 70 570 4 HOH HOH . F 6 HOH A 71 571 10 HOH HOH . F 6 HOH A 72 572 106 HOH HOH . F 6 HOH A 73 573 124 HOH HOH . F 6 HOH A 74 574 8 HOH HOH . F 6 HOH A 75 575 32 HOH HOH . F 6 HOH A 76 576 44 HOH HOH . F 6 HOH A 77 577 148 HOH HOH . F 6 HOH A 78 578 82 HOH HOH . F 6 HOH A 79 579 18 HOH HOH . F 6 HOH A 80 580 154 HOH HOH . F 6 HOH A 81 581 13 HOH HOH . F 6 HOH A 82 582 31 HOH HOH . F 6 HOH A 83 583 29 HOH HOH . F 6 HOH A 84 584 101 HOH HOH . F 6 HOH A 85 585 54 HOH HOH . F 6 HOH A 86 586 190 HOH HOH . F 6 HOH A 87 587 77 HOH HOH . F 6 HOH A 88 588 61 HOH HOH . F 6 HOH A 89 589 57 HOH HOH . F 6 HOH A 90 590 34 HOH HOH . F 6 HOH A 91 591 20 HOH HOH . F 6 HOH A 92 592 126 HOH HOH . F 6 HOH A 93 593 83 HOH HOH . F 6 HOH A 94 594 24 HOH HOH . F 6 HOH A 95 595 90 HOH HOH . F 6 HOH A 96 596 187 HOH HOH . F 6 HOH A 97 597 78 HOH HOH . F 6 HOH A 98 598 1 HOH HOH . F 6 HOH A 99 599 64 HOH HOH . F 6 HOH A 100 600 89 HOH HOH . F 6 HOH A 101 601 38 HOH HOH . F 6 HOH A 102 602 39 HOH HOH . F 6 HOH A 103 603 30 HOH HOH . F 6 HOH A 104 604 159 HOH HOH . F 6 HOH A 105 605 109 HOH HOH . F 6 HOH A 106 606 132 HOH HOH . F 6 HOH A 107 607 141 HOH HOH . F 6 HOH A 108 608 105 HOH HOH . F 6 HOH A 109 609 26 HOH HOH . F 6 HOH A 110 610 41 HOH HOH . F 6 HOH A 111 611 56 HOH HOH . F 6 HOH A 112 612 137 HOH HOH . F 6 HOH A 113 613 96 HOH HOH . F 6 HOH A 114 614 28 HOH HOH . F 6 HOH A 115 615 180 HOH HOH . F 6 HOH A 116 616 120 HOH HOH . F 6 HOH A 117 617 80 HOH HOH . F 6 HOH A 118 618 143 HOH HOH . F 6 HOH A 119 619 128 HOH HOH . F 6 HOH A 120 620 135 HOH HOH . F 6 HOH A 121 621 102 HOH HOH . F 6 HOH A 122 622 110 HOH HOH . F 6 HOH A 123 623 166 HOH HOH . F 6 HOH A 124 624 85 HOH HOH . F 6 HOH A 125 625 169 HOH HOH . F 6 HOH A 126 626 160 HOH HOH . F 6 HOH A 127 627 62 HOH HOH . F 6 HOH A 128 628 87 HOH HOH . F 6 HOH A 129 629 37 HOH HOH . F 6 HOH A 130 630 49 HOH HOH . F 6 HOH A 131 631 192 HOH HOH . F 6 HOH A 132 632 176 HOH HOH . F 6 HOH A 133 633 45 HOH HOH . F 6 HOH A 134 634 174 HOH HOH . F 6 HOH A 135 635 182 HOH HOH . F 6 HOH A 136 636 179 HOH HOH . F 6 HOH A 137 637 142 HOH HOH . F 6 HOH A 138 638 108 HOH HOH . F 6 HOH A 139 639 99 HOH HOH . F 6 HOH A 140 640 139 HOH HOH . F 6 HOH A 141 641 167 HOH HOH . F 6 HOH A 142 642 155 HOH HOH . F 6 HOH A 143 643 136 HOH HOH . F 6 HOH A 144 644 123 HOH HOH . F 6 HOH A 145 645 133 HOH HOH . F 6 HOH A 146 646 70 HOH HOH . F 6 HOH A 147 647 66 HOH HOH . F 6 HOH A 148 648 129 HOH HOH . F 6 HOH A 149 649 138 HOH HOH . F 6 HOH A 150 650 107 HOH HOH . F 6 HOH A 151 651 60 HOH HOH . F 6 HOH A 152 652 79 HOH HOH . F 6 HOH A 153 653 12 HOH HOH . F 6 HOH A 154 654 68 HOH HOH . F 6 HOH A 155 655 188 HOH HOH . F 6 HOH A 156 656 69 HOH HOH . F 6 HOH A 157 657 48 HOH HOH . F 6 HOH A 158 658 146 HOH HOH . F 6 HOH A 159 659 75 HOH HOH . F 6 HOH A 160 660 63 HOH HOH . F 6 HOH A 161 661 161 HOH HOH . F 6 HOH A 162 662 140 HOH HOH . F 6 HOH A 163 663 93 HOH HOH . F 6 HOH A 164 664 175 HOH HOH . F 6 HOH A 165 665 164 HOH HOH . F 6 HOH A 166 666 189 HOH HOH . F 6 HOH A 167 667 127 HOH HOH . F 6 HOH A 168 668 165 HOH HOH . F 6 HOH A 169 669 88 HOH HOH . F 6 HOH A 170 670 172 HOH HOH . F 6 HOH A 171 671 113 HOH HOH . F 6 HOH A 172 672 150 HOH HOH . F 6 HOH A 173 673 185 HOH HOH . F 6 HOH A 174 674 86 HOH HOH . F 6 HOH A 175 675 116 HOH HOH . F 6 HOH A 176 676 147 HOH HOH . F 6 HOH A 177 677 51 HOH HOH . F 6 HOH A 178 678 33 HOH HOH . F 6 HOH A 179 679 186 HOH HOH . F 6 HOH A 180 680 94 HOH HOH . F 6 HOH A 181 681 122 HOH HOH . F 6 HOH A 182 682 144 HOH HOH . F 6 HOH A 183 683 152 HOH HOH . F 6 HOH A 184 684 173 HOH HOH . F 6 HOH A 185 685 168 HOH HOH . F 6 HOH A 186 686 130 HOH HOH . F 6 HOH A 187 687 178 HOH HOH . F 6 HOH A 188 688 125 HOH HOH . F 6 HOH A 189 689 191 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -13.403 _atom_site.Cartn_y -50.211 _atom_site.Cartn_z -13.354 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #