data_6QLY # _model_server_result.job_id J_Z0uXxBF8T2U_zMRCTBog _model_server_result.datetime_utc '2025-01-09 10:01:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6QLY # _exptl.entry_id 6QLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QLY _cell.length_a 159.49 _cell.length_b 159.49 _cell.length_c 76.722 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -79.745 79.745 38.361 3 'crystal symmetry operation' 10_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -159.49 0 0 4 'crystal symmetry operation' 16_445 -y-1/2,-x-1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 -79.745 -79.745 38.361 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6QLY _atom_sites.fract_transf_matrix[1][1] 0.00627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 EDO A 1 402 2 EDO EDO . D 3 EDO A 1 403 3 EDO EDO . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 26 HOH HOH . E 4 HOH A 3 503 20 HOH HOH . E 4 HOH A 4 504 43 HOH HOH . E 4 HOH A 5 505 25 HOH HOH . E 4 HOH A 6 506 34 HOH HOH . E 4 HOH A 7 507 4 HOH HOH . E 4 HOH A 8 508 40 HOH HOH . E 4 HOH A 9 509 42 HOH HOH . E 4 HOH A 10 510 21 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 7 HOH HOH . E 4 HOH A 13 513 2 HOH HOH . E 4 HOH A 14 514 24 HOH HOH . E 4 HOH A 15 515 23 HOH HOH . E 4 HOH A 16 516 39 HOH HOH . E 4 HOH A 17 517 5 HOH HOH . E 4 HOH A 18 518 9 HOH HOH . E 4 HOH A 19 519 8 HOH HOH . E 4 HOH A 20 520 27 HOH HOH . E 4 HOH A 21 521 12 HOH HOH . E 4 HOH A 22 522 33 HOH HOH . E 4 HOH A 23 523 3 HOH HOH . E 4 HOH A 24 524 30 HOH HOH . E 4 HOH A 25 525 31 HOH HOH . E 4 HOH A 26 526 38 HOH HOH . E 4 HOH A 27 527 10 HOH HOH . E 4 HOH A 28 528 17 HOH HOH . E 4 HOH A 29 529 22 HOH HOH . E 4 HOH A 30 530 15 HOH HOH . E 4 HOH A 31 531 14 HOH HOH . E 4 HOH A 32 532 36 HOH HOH . E 4 HOH A 33 533 41 HOH HOH . E 4 HOH A 34 534 16 HOH HOH . E 4 HOH A 35 535 19 HOH HOH . E 4 HOH A 36 536 18 HOH HOH . E 4 HOH A 37 537 35 HOH HOH . E 4 HOH A 38 538 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -17.866 -16.478 18.568 1 124.33 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 -18.083 -16.743 17.184 1 124.27 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 -16.534 -17.112 19.061 1 124.38 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 -16.273 -16.732 20.409 1 124.2 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #