data_6QM3
#
_model_server_result.job_id            ldeZ77gpDcdWHJhhLHmPeg 
_model_server_result.datetime_utc      '2024-10-19 11:27:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qm3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":506}' 
#
_entry.id    6QM3 
#
_exptl.entry_id    6QM3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.435 
_cell.angle_gamma         90 
_cell.entry_id            6QM3 
_cell.length_a            160.705 
_cell.length_b            46.971 
_cell.length_c            104.952 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QM3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 A CYS 221 1_555 B SG CYS 11 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 17 A CYS 227 1_555 A SG CYS 199 A CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 B SG CYS 17 B CYS 227 1_555 B SG CYS 199 B CYS 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 A ND2 ASN 78 A ASN 288 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale2 A ND2 ASN 97 A ASN 307 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 A ND2 ASN 184 A ASN 394 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 A ND2 ASN 263 A ASN 473 1_555 F C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 B ND2 ASN 78 B ASN 288 1_555 L C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale6 B ND2 ASN 97 B ASN 307 1_555 M C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale7 B ND2 ASN 184 B ASN 394 1_555 N C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale8 B ND2 ASN 263 B ASN 473 1_555 O C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
metalc ? metalc1 A O GLY 92 A GLY 302 1_555 I NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? 
metalc ? metalc2 A OD2 ASP 146 A ASP 356 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc3 A OD1 ASP 146 A ASP 356 1_555 I NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc4 A O LEU 147 A LEU 357 1_555 I NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc5 A OE1 GLU 194 A GLU 404 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc6 A O ALA 195 A ALA 405 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc7 A O LEU 242 A LEU 452 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc8 A OD1 ASP 243 A ASP 453 1_555 H CA CA . A CA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc9 A OD2 ASP 243 A ASP 453 1_555 I NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc10 H CA CA . A CA 506 1_555 S O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc11 I NA NA . A NA 507 1_555 S O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc12 B OD2 ASP 146 B ASP 356 1_555 P CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc13 B OD1 ASP 146 B ASP 356 1_555 Q NA NA . B NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc14 B O LEU 147 B LEU 357 1_555 Q NA NA . B NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc15 B OE1 GLU 194 B GLU 404 1_555 P CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc16 B O ALA 195 B ALA 405 1_555 P CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc17 B O LEU 242 B LEU 452 1_555 P CA CA . B CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc18 B OD1 ASP 243 B ASP 453 1_555 Q NA NA . B NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? 
metalc ? metalc19 B OD2 ASP 243 B ASP 453 1_555 Q NA NA . B NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
metalc ? metalc20 P CA CA . B CA 505 1_555 T O HOH . B HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc21 Q NA NA . B NA 506 1_555 T O HOH . B HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6QM3 
_atom_sites.fract_transf_matrix[1][1]    0.006223 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00323 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02129 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010736 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 501 1288 NAG NAG . 
D 2 NAG A 1 502 1307 NAG NAG . 
E 2 NAG A 1 503 1394 NAG NAG . 
F 2 NAG A 1 504 1473 NAG NAG . 
G 3 CAC A 1 505 1 CAC CAC . 
H 4 CA A 1 506 1 CA CA . 
I 5 NA A 1 507 2 NA NA . 
J 6 ACT A 1 508 1 ACT ACT . 
K 6 ACT A 1 509 2 ACT ACT . 
L 2 NAG B 1 501 1288 NAG NAG . 
M 2 NAG B 1 502 1307 NAG NAG . 
N 2 NAG B 1 503 1394 NAG NAG . 
O 2 NAG B 1 504 1473 NAG NAG . 
P 4 CA B 1 505 3 CA CA . 
Q 5 NA B 1 506 4 NA NA . 
R 6 ACT B 1 507 3 ACT ACT . 
S 7 HOH A 1 601 62 HOH HOH . 
S 7 HOH A 2 602 69 HOH HOH . 
S 7 HOH A 3 603 85 HOH HOH . 
S 7 HOH A 4 604 65 HOH HOH . 
S 7 HOH A 5 605 52 HOH HOH . 
S 7 HOH A 6 606 15 HOH HOH . 
S 7 HOH A 7 607 1 HOH HOH . 
S 7 HOH A 8 608 68 HOH HOH . 
S 7 HOH A 9 609 17 HOH HOH . 
S 7 HOH A 10 610 13 HOH HOH . 
S 7 HOH A 11 611 4 HOH HOH . 
S 7 HOH A 12 612 53 HOH HOH . 
S 7 HOH A 13 613 21 HOH HOH . 
S 7 HOH A 14 614 34 HOH HOH . 
S 7 HOH A 15 615 22 HOH HOH . 
S 7 HOH A 16 616 48 HOH HOH . 
S 7 HOH A 17 617 8 HOH HOH . 
S 7 HOH A 18 618 49 HOH HOH . 
S 7 HOH A 19 619 25 HOH HOH . 
S 7 HOH A 20 620 36 HOH HOH . 
S 7 HOH A 21 621 24 HOH HOH . 
S 7 HOH A 22 622 47 HOH HOH . 
S 7 HOH A 23 623 16 HOH HOH . 
S 7 HOH A 24 624 61 HOH HOH . 
S 7 HOH A 25 625 63 HOH HOH . 
S 7 HOH A 26 626 19 HOH HOH . 
S 7 HOH A 27 627 2 HOH HOH . 
S 7 HOH A 28 628 58 HOH HOH . 
S 7 HOH A 29 629 33 HOH HOH . 
S 7 HOH A 30 630 97 HOH HOH . 
S 7 HOH A 31 631 51 HOH HOH . 
S 7 HOH A 32 632 5 HOH HOH . 
S 7 HOH A 33 633 83 HOH HOH . 
S 7 HOH A 34 634 41 HOH HOH . 
S 7 HOH A 35 635 89 HOH HOH . 
S 7 HOH A 36 636 81 HOH HOH . 
S 7 HOH A 37 637 35 HOH HOH . 
S 7 HOH A 38 638 44 HOH HOH . 
S 7 HOH A 39 639 79 HOH HOH . 
S 7 HOH A 40 640 56 HOH HOH . 
S 7 HOH A 41 641 45 HOH HOH . 
S 7 HOH A 42 642 46 HOH HOH . 
S 7 HOH A 43 643 98 HOH HOH . 
S 7 HOH A 44 644 95 HOH HOH . 
S 7 HOH A 45 645 82 HOH HOH . 
S 7 HOH A 46 646 28 HOH HOH . 
S 7 HOH A 47 647 84 HOH HOH . 
T 7 HOH B 1 601 80 HOH HOH . 
T 7 HOH B 2 602 30 HOH HOH . 
T 7 HOH B 3 603 23 HOH HOH . 
T 7 HOH B 4 604 39 HOH HOH . 
T 7 HOH B 5 605 74 HOH HOH . 
T 7 HOH B 6 606 31 HOH HOH . 
T 7 HOH B 7 607 99 HOH HOH . 
T 7 HOH B 8 608 59 HOH HOH . 
T 7 HOH B 9 609 27 HOH HOH . 
T 7 HOH B 10 610 67 HOH HOH . 
T 7 HOH B 11 611 96 HOH HOH . 
T 7 HOH B 12 612 75 HOH HOH . 
T 7 HOH B 13 613 54 HOH HOH . 
T 7 HOH B 14 614 77 HOH HOH . 
T 7 HOH B 15 615 10 HOH HOH . 
T 7 HOH B 16 616 3 HOH HOH . 
T 7 HOH B 17 617 76 HOH HOH . 
T 7 HOH B 18 618 50 HOH HOH . 
T 7 HOH B 19 619 11 HOH HOH . 
T 7 HOH B 20 620 32 HOH HOH . 
T 7 HOH B 21 621 73 HOH HOH . 
T 7 HOH B 22 622 42 HOH HOH . 
T 7 HOH B 23 623 94 HOH HOH . 
T 7 HOH B 24 624 55 HOH HOH . 
T 7 HOH B 25 625 9 HOH HOH . 
T 7 HOH B 26 626 26 HOH HOH . 
T 7 HOH B 27 627 20 HOH HOH . 
T 7 HOH B 28 628 57 HOH HOH . 
T 7 HOH B 29 629 7 HOH HOH . 
T 7 HOH B 30 630 60 HOH HOH . 
T 7 HOH B 31 631 29 HOH HOH . 
T 7 HOH B 32 632 88 HOH HOH . 
T 7 HOH B 33 633 91 HOH HOH . 
T 7 HOH B 34 634 12 HOH HOH . 
T 7 HOH B 35 635 14 HOH HOH . 
T 7 HOH B 36 636 43 HOH HOH . 
T 7 HOH B 37 637 70 HOH HOH . 
T 7 HOH B 38 638 18 HOH HOH . 
T 7 HOH B 39 639 6 HOH HOH . 
T 7 HOH B 40 640 66 HOH HOH . 
T 7 HOH B 41 641 40 HOH HOH . 
T 7 HOH B 42 642 93 HOH HOH . 
T 7 HOH B 43 643 86 HOH HOH . 
T 7 HOH B 44 644 37 HOH HOH . 
T 7 HOH B 45 645 87 HOH HOH . 
T 7 HOH B 46 646 64 HOH HOH . 
T 7 HOH B 47 647 38 HOH HOH . 
T 7 HOH B 48 648 90 HOH HOH . 
T 7 HOH B 49 649 92 HOH HOH . 
T 7 HOH B 50 650 78 HOH HOH . 
T 7 HOH B 51 651 72 HOH HOH . 
T 7 HOH B 52 652 71 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Q 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               88.687 
_atom_site.Cartn_y               22.386 
_atom_site.Cartn_z               61.965 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        58.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           506 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#