data_6QMF # _model_server_result.job_id HrX8-rNWvhW8bLW6-WprqA _model_server_result.datetime_utc '2024-11-25 07:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 6QMF # _exptl.entry_id 6QMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6QMF _cell.length_a 97.951 _cell.length_b 97.951 _cell.length_c 112.729 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 169.656109 0 3 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -146.9265 84.828054 0 4 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -146.9265 84.828054 0 5 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 169.656109 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6QMF _atom_sites.fract_transf_matrix[1][1] 0.010209 _atom_sites.fract_transf_matrix[1][2] 0.005894 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EQ5 A 1 201 1 EQ5 LIG . C 3 DMS A 1 202 1 DMS DMS . D 4 HOH A 1 301 24 HOH HOH . D 4 HOH A 2 302 21 HOH HOH . D 4 HOH A 3 303 22 HOH HOH . D 4 HOH A 4 304 16 HOH HOH . D 4 HOH A 5 305 13 HOH HOH . D 4 HOH A 6 306 2 HOH HOH . D 4 HOH A 7 307 4 HOH HOH . D 4 HOH A 8 308 10 HOH HOH . D 4 HOH A 9 309 29 HOH HOH . D 4 HOH A 10 310 9 HOH HOH . D 4 HOH A 11 311 39 HOH HOH . D 4 HOH A 12 312 17 HOH HOH . D 4 HOH A 13 313 11 HOH HOH . D 4 HOH A 14 314 30 HOH HOH . D 4 HOH A 15 315 26 HOH HOH . D 4 HOH A 16 316 7 HOH HOH . D 4 HOH A 17 317 6 HOH HOH . D 4 HOH A 18 318 1 HOH HOH . D 4 HOH A 19 319 23 HOH HOH . D 4 HOH A 20 320 12 HOH HOH . D 4 HOH A 21 321 18 HOH HOH . D 4 HOH A 22 322 27 HOH HOH . D 4 HOH A 23 323 31 HOH HOH . D 4 HOH A 24 324 32 HOH HOH . D 4 HOH A 25 325 14 HOH HOH . D 4 HOH A 26 326 36 HOH HOH . D 4 HOH A 27 327 20 HOH HOH . D 4 HOH A 28 328 3 HOH HOH . D 4 HOH A 29 329 37 HOH HOH . D 4 HOH A 30 330 15 HOH HOH . D 4 HOH A 31 331 35 HOH HOH . D 4 HOH A 32 332 28 HOH HOH . D 4 HOH A 33 333 33 HOH HOH . D 4 HOH A 34 334 19 HOH HOH . D 4 HOH A 35 335 5 HOH HOH . D 4 HOH A 36 336 34 HOH HOH . D 4 HOH A 37 337 8 HOH HOH . D 4 HOH A 38 338 25 HOH HOH . D 4 HOH A 39 339 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -49.089 84.738 6.103 0.33 43.19 ? S DMS 202 A 1 HETATM 2 O O DMS . . . C 3 -48.802 84.877 7.569 0.33 37.47 ? O DMS 202 A 1 HETATM 3 C C1 DMS . . . C 3 -48.889 86.336 5.271 0.5 76.9 ? C1 DMS 202 A 1 HETATM 4 C C2 DMS . . . C 3 -47.748 83.842 5.275 0.5 76.86 ? C2 DMS 202 A 1 HETATM 5 H H11 DMS . . . C 3 -49.008 86.209 4.227 0.5 92.28 ? H11 DMS 202 A 1 HETATM 6 H H12 DMS . . . C 3 -47.923 86.721 5.472 0.5 92.28 ? H12 DMS 202 A 1 HETATM 7 H H13 DMS . . . C 3 -49.62 87.015 5.629 0.5 92.28 ? H13 DMS 202 A 1 HETATM 8 H H21 DMS . . . C 3 -46.827 84.325 5.472 0.5 92.23 ? H21 DMS 202 A 1 HETATM 9 H H22 DMS . . . C 3 -47.711 82.848 5.638 0.5 92.23 ? H22 DMS 202 A 1 HETATM 10 H H23 DMS . . . C 3 -47.924 83.829 4.231 0.5 92.23 ? H23 DMS 202 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #