data_6QND # _model_server_result.job_id Sob1a3yPSA80tEQZ2OnQ3Q _model_server_result.datetime_utc '2024-11-28 05:00:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6QND # _exptl.entry_id 6QND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description D-glucose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QND _cell.length_a 95.02 _cell.length_b 99.56 _cell.length_c 87.65 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QND _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 181 A GLU 181 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A OE1 GLU 217 A GLU 217 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc3 A OE2 GLU 217 A GLU 217 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc4 A NE2 HIS 220 A HIS 220 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc5 A OD2 ASP 245 A ASP 245 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 A OD1 ASP 255 A ASP 255 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc7 A OD2 ASP 255 A ASP 255 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 A OD1 ASP 257 A ASP 257 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc9 A OD2 ASP 287 A ASP 287 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc10 B O3 GLO . A GLO 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc11 B O4 GLO . A GLO 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc12 D CO CO . A CO 403 1_555 E O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLO _chem_comp.mon_nstd_flag . _chem_comp.name D-glucose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'D-GLUCOSE IN LINEAR FORM' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLO sing 102 n n C1 O1 GLO doub 103 n n C1 H1 GLO sing 104 n n C2 C3 GLO sing 105 n n C2 O2 GLO sing 106 n n C2 H2 GLO sing 107 n n C3 C4 GLO sing 108 n n C3 O3 GLO sing 109 n n C3 H3 GLO sing 110 n n C4 C5 GLO sing 111 n n C4 O4 GLO sing 112 n n C4 H4 GLO sing 113 n n C5 C6 GLO sing 114 n n C5 O5 GLO sing 115 n n C5 H5 GLO sing 116 n n C6 O6 GLO sing 117 n n C6 H61 GLO sing 118 n n C6 H62 GLO sing 119 n n O2 HO2 GLO sing 120 n n O3 HO3 GLO sing 121 n n O4 HO4 GLO sing 122 n n O5 HO5 GLO sing 123 n n O6 HO6 GLO sing 124 n n # _atom_sites.entry_id 6QND _atom_sites.fract_transf_matrix[1][1] 0.010524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLO A 1 401 401 GLO GLO . C 3 MG A 1 402 2 MG MG . D 4 CO A 1 403 2 CO CO . E 5 HOH A 1 501 201 HOH HOH . E 5 HOH A 2 502 122 HOH HOH . E 5 HOH A 3 503 86 HOH HOH . E 5 HOH A 4 504 182 HOH HOH . E 5 HOH A 5 505 181 HOH HOH . E 5 HOH A 6 506 167 HOH HOH . E 5 HOH A 7 507 107 HOH HOH . E 5 HOH A 8 508 44 HOH HOH . E 5 HOH A 9 509 204 HOH HOH . E 5 HOH A 10 510 79 HOH HOH . E 5 HOH A 11 511 71 HOH HOH . E 5 HOH A 12 512 57 HOH HOH . E 5 HOH A 13 513 156 HOH HOH . E 5 HOH A 14 514 61 HOH HOH . E 5 HOH A 15 515 60 HOH HOH . E 5 HOH A 16 516 149 HOH HOH . E 5 HOH A 17 517 175 HOH HOH . E 5 HOH A 18 518 28 HOH HOH . E 5 HOH A 19 519 135 HOH HOH . E 5 HOH A 20 520 143 HOH HOH . E 5 HOH A 21 521 100 HOH HOH . E 5 HOH A 22 522 88 HOH HOH . E 5 HOH A 23 523 83 HOH HOH . E 5 HOH A 24 524 77 HOH HOH . E 5 HOH A 25 525 139 HOH HOH . E 5 HOH A 26 526 202 HOH HOH . E 5 HOH A 27 527 68 HOH HOH . E 5 HOH A 28 528 205 HOH HOH . E 5 HOH A 29 529 161 HOH HOH . E 5 HOH A 30 530 11 HOH HOH . E 5 HOH A 31 531 118 HOH HOH . E 5 HOH A 32 532 31 HOH HOH . E 5 HOH A 33 533 42 HOH HOH . E 5 HOH A 34 534 8 HOH HOH . E 5 HOH A 35 535 146 HOH HOH . E 5 HOH A 36 536 66 HOH HOH . E 5 HOH A 37 537 81 HOH HOH . E 5 HOH A 38 538 114 HOH HOH . E 5 HOH A 39 539 53 HOH HOH . E 5 HOH A 40 540 64 HOH HOH . E 5 HOH A 41 541 128 HOH HOH . E 5 HOH A 42 542 5 HOH HOH . E 5 HOH A 43 543 148 HOH HOH . E 5 HOH A 44 544 38 HOH HOH . E 5 HOH A 45 545 166 HOH HOH . E 5 HOH A 46 546 93 HOH HOH . E 5 HOH A 47 547 209 HOH HOH . E 5 HOH A 48 548 67 HOH HOH . E 5 HOH A 49 549 180 HOH HOH . E 5 HOH A 50 550 191 HOH HOH . E 5 HOH A 51 551 138 HOH HOH . E 5 HOH A 52 552 121 HOH HOH . E 5 HOH A 53 553 165 HOH HOH . E 5 HOH A 54 554 91 HOH HOH . E 5 HOH A 55 555 152 HOH HOH . E 5 HOH A 56 556 130 HOH HOH . E 5 HOH A 57 557 119 HOH HOH . E 5 HOH A 58 558 169 HOH HOH . E 5 HOH A 59 559 56 HOH HOH . E 5 HOH A 60 560 15 HOH HOH . E 5 HOH A 61 561 98 HOH HOH . E 5 HOH A 62 562 37 HOH HOH . E 5 HOH A 63 563 65 HOH HOH . E 5 HOH A 64 564 126 HOH HOH . E 5 HOH A 65 565 25 HOH HOH . E 5 HOH A 66 566 49 HOH HOH . E 5 HOH A 67 567 109 HOH HOH . E 5 HOH A 68 568 219 HOH HOH . E 5 HOH A 69 569 26 HOH HOH . E 5 HOH A 70 570 41 HOH HOH . E 5 HOH A 71 571 21 HOH HOH . E 5 HOH A 72 572 188 HOH HOH . E 5 HOH A 73 573 46 HOH HOH . E 5 HOH A 74 574 3 HOH HOH . E 5 HOH A 75 575 162 HOH HOH . E 5 HOH A 76 576 104 HOH HOH . E 5 HOH A 77 577 195 HOH HOH . E 5 HOH A 78 578 73 HOH HOH . E 5 HOH A 79 579 30 HOH HOH . E 5 HOH A 80 580 147 HOH HOH . E 5 HOH A 81 581 54 HOH HOH . E 5 HOH A 82 582 99 HOH HOH . E 5 HOH A 83 583 2 HOH HOH . E 5 HOH A 84 584 131 HOH HOH . E 5 HOH A 85 585 29 HOH HOH . E 5 HOH A 86 586 24 HOH HOH . E 5 HOH A 87 587 115 HOH HOH . E 5 HOH A 88 588 39 HOH HOH . E 5 HOH A 89 589 123 HOH HOH . E 5 HOH A 90 590 47 HOH HOH . E 5 HOH A 91 591 69 HOH HOH . E 5 HOH A 92 592 12 HOH HOH . E 5 HOH A 93 593 141 HOH HOH . E 5 HOH A 94 594 63 HOH HOH . E 5 HOH A 95 595 9 HOH HOH . E 5 HOH A 96 596 185 HOH HOH . E 5 HOH A 97 597 18 HOH HOH . E 5 HOH A 98 598 55 HOH HOH . E 5 HOH A 99 599 87 HOH HOH . E 5 HOH A 100 600 22 HOH HOH . E 5 HOH A 101 601 34 HOH HOH . E 5 HOH A 102 602 105 HOH HOH . E 5 HOH A 103 603 101 HOH HOH . E 5 HOH A 104 604 48 HOH HOH . E 5 HOH A 105 605 76 HOH HOH . E 5 HOH A 106 606 97 HOH HOH . E 5 HOH A 107 607 7 HOH HOH . E 5 HOH A 108 608 111 HOH HOH . E 5 HOH A 109 609 117 HOH HOH . E 5 HOH A 110 610 108 HOH HOH . E 5 HOH A 111 611 160 HOH HOH . E 5 HOH A 112 612 103 HOH HOH . E 5 HOH A 113 613 74 HOH HOH . E 5 HOH A 114 614 137 HOH HOH . E 5 HOH A 115 615 133 HOH HOH . E 5 HOH A 116 616 163 HOH HOH . E 5 HOH A 117 617 40 HOH HOH . E 5 HOH A 118 618 4 HOH HOH . E 5 HOH A 119 619 78 HOH HOH . E 5 HOH A 120 620 158 HOH HOH . E 5 HOH A 121 621 20 HOH HOH . E 5 HOH A 122 622 124 HOH HOH . E 5 HOH A 123 623 197 HOH HOH . E 5 HOH A 124 624 23 HOH HOH . E 5 HOH A 125 625 142 HOH HOH . E 5 HOH A 126 626 19 HOH HOH . E 5 HOH A 127 627 58 HOH HOH . E 5 HOH A 128 628 85 HOH HOH . E 5 HOH A 129 629 62 HOH HOH . E 5 HOH A 130 630 32 HOH HOH . E 5 HOH A 131 631 173 HOH HOH . E 5 HOH A 132 632 178 HOH HOH . E 5 HOH A 133 633 154 HOH HOH . E 5 HOH A 134 634 16 HOH HOH . E 5 HOH A 135 635 36 HOH HOH . E 5 HOH A 136 636 210 HOH HOH . E 5 HOH A 137 637 174 HOH HOH . E 5 HOH A 138 638 92 HOH HOH . E 5 HOH A 139 639 70 HOH HOH . E 5 HOH A 140 640 127 HOH HOH . E 5 HOH A 141 641 43 HOH HOH . E 5 HOH A 142 642 193 HOH HOH . E 5 HOH A 143 643 10 HOH HOH . E 5 HOH A 144 644 102 HOH HOH . E 5 HOH A 145 645 6 HOH HOH . E 5 HOH A 146 646 33 HOH HOH . E 5 HOH A 147 647 1 HOH HOH . E 5 HOH A 148 648 134 HOH HOH . E 5 HOH A 149 649 50 HOH HOH . E 5 HOH A 150 650 35 HOH HOH . E 5 HOH A 151 651 192 HOH HOH . E 5 HOH A 152 652 90 HOH HOH . E 5 HOH A 153 653 113 HOH HOH . E 5 HOH A 154 654 120 HOH HOH . E 5 HOH A 155 655 17 HOH HOH . E 5 HOH A 156 656 13 HOH HOH . E 5 HOH A 157 657 75 HOH HOH . E 5 HOH A 158 658 157 HOH HOH . E 5 HOH A 159 659 164 HOH HOH . E 5 HOH A 160 660 176 HOH HOH . E 5 HOH A 161 661 208 HOH HOH . E 5 HOH A 162 662 159 HOH HOH . E 5 HOH A 163 663 170 HOH HOH . E 5 HOH A 164 664 179 HOH HOH . E 5 HOH A 165 665 215 HOH HOH . E 5 HOH A 166 666 203 HOH HOH . E 5 HOH A 167 667 217 HOH HOH . E 5 HOH A 168 668 150 HOH HOH . E 5 HOH A 169 669 52 HOH HOH . E 5 HOH A 170 670 84 HOH HOH . E 5 HOH A 171 671 125 HOH HOH . E 5 HOH A 172 672 14 HOH HOH . E 5 HOH A 173 673 140 HOH HOH . E 5 HOH A 174 674 80 HOH HOH . E 5 HOH A 175 675 106 HOH HOH . E 5 HOH A 176 676 153 HOH HOH . E 5 HOH A 177 677 168 HOH HOH . E 5 HOH A 178 678 59 HOH HOH . E 5 HOH A 179 679 212 HOH HOH . E 5 HOH A 180 680 51 HOH HOH . E 5 HOH A 181 681 82 HOH HOH . E 5 HOH A 182 682 94 HOH HOH . E 5 HOH A 183 683 95 HOH HOH . E 5 HOH A 184 684 198 HOH HOH . E 5 HOH A 185 685 199 HOH HOH . E 5 HOH A 186 686 183 HOH HOH . E 5 HOH A 187 687 177 HOH HOH . E 5 HOH A 188 688 45 HOH HOH . E 5 HOH A 189 689 89 HOH HOH . E 5 HOH A 190 690 206 HOH HOH . E 5 HOH A 191 691 211 HOH HOH . E 5 HOH A 192 692 200 HOH HOH . E 5 HOH A 193 693 145 HOH HOH . E 5 HOH A 194 694 144 HOH HOH . E 5 HOH A 195 695 132 HOH HOH . E 5 HOH A 196 696 96 HOH HOH . E 5 HOH A 197 697 218 HOH HOH . E 5 HOH A 198 698 186 HOH HOH . E 5 HOH A 199 699 151 HOH HOH . E 5 HOH A 200 700 172 HOH HOH . E 5 HOH A 201 701 110 HOH HOH . E 5 HOH A 202 702 72 HOH HOH . E 5 HOH A 203 703 214 HOH HOH . E 5 HOH A 204 704 184 HOH HOH . E 5 HOH A 205 705 213 HOH HOH . E 5 HOH A 206 706 207 HOH HOH . E 5 HOH A 207 707 171 HOH HOH . E 5 HOH A 208 708 196 HOH HOH . E 5 HOH A 209 709 155 HOH HOH . E 5 HOH A 210 710 189 HOH HOH . E 5 HOH A 211 711 116 HOH HOH . E 5 HOH A 212 712 190 HOH HOH . E 5 HOH A 213 713 27 HOH HOH . E 5 HOH A 214 714 112 HOH HOH . E 5 HOH A 215 715 129 HOH HOH . E 5 HOH A 216 716 187 HOH HOH . E 5 HOH A 217 717 220 HOH HOH . E 5 HOH A 218 718 216 HOH HOH . E 5 HOH A 219 719 136 HOH HOH . E 5 HOH A 220 720 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLO . . . B 2 10.489 6.311 24.534 0.62 32.96 ? C1 GLO 401 A 1 HETATM 2 C C2 GLO . . . B 2 11.067 5.546 25.771 0.62 32.6 ? C2 GLO 401 A 1 HETATM 3 C C3 GLO . . . B 2 11.653 6.492 26.806 0.62 29.25 ? C3 GLO 401 A 1 HETATM 4 C C4 GLO . . . B 2 13.196 6.499 26.8 0.62 32.52 ? C4 GLO 401 A 1 HETATM 5 C C5 GLO . . . B 2 13.748 6.583 25.403 0.62 30.37 ? C5 GLO 401 A 1 HETATM 6 C C6 GLO . . . B 2 15.112 7.204 25.504 0.62 30.37 ? C6 GLO 401 A 1 HETATM 7 O O1 GLO . . . B 2 9.315 6.206 24.223 0.62 34.29 ? O1 GLO 401 A 1 HETATM 8 O O2 GLO . . . B 2 10.048 4.777 26.366 0.62 39.06 ? O2 GLO 401 A 1 HETATM 9 O O3 GLO . . . B 2 11.283 6.116 28.131 0.62 29.91 ? O3 GLO 401 A 1 HETATM 10 O O4 GLO . . . B 2 13.603 7.637 27.525 0.62 30.55 ? O4 GLO 401 A 1 HETATM 11 O O5 GLO . . . B 2 13.903 5.302 24.82 0.62 35.39 ? O5 GLO 401 A 1 HETATM 12 O O6 GLO . . . B 2 15.932 6.248 26.081 0.62 29.86 ? O6 GLO 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #