data_6QOE # _model_server_result.job_id 35vwefgI9jQetkIzF2ur4Q _model_server_result.datetime_utc '2024-11-07 07:40:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qoe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6QOE # _exptl.entry_id 6QOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.337 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(thiophen-2-ylsulfanylmethyl)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QOE _cell.length_a 74.596 _cell.length_b 79.739 _cell.length_c 86.758 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H10 O2 S2' _chem_comp.formula_weight 250.337 _chem_comp.id JBB _chem_comp.mon_nstd_flag . _chem_comp.name '3-(thiophen-2-ylsulfanylmethyl)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 JBB doub 173 n y C13 C14 JBB sing 174 n y C12 S11 JBB sing 175 n y C14 C10 JBB doub 176 n y S11 C10 JBB sing 177 n y C10 S09 JBB sing 178 n n S09 C08 JBB sing 179 n n C08 C07 JBB sing 180 n n C06 C07 JBB doub 181 n y C06 C05 JBB sing 182 n y C07 C15 JBB sing 183 n y C05 C04 JBB doub 184 n y C15 C03 JBB doub 185 n y C04 C03 JBB sing 186 n y C03 C02 JBB sing 187 n n O01 C02 JBB doub 188 n n C02 O16 JBB sing 189 n n C13 H1 JBB sing 190 n n C15 H2 JBB sing 191 n n C04 H3 JBB sing 192 n n C05 H4 JBB sing 193 n n C06 H5 JBB sing 194 n n C08 H6 JBB sing 195 n n C08 H7 JBB sing 196 n n C12 H8 JBB sing 197 n n C14 H9 JBB sing 198 n n O16 H10 JBB sing 199 n n # _atom_sites.entry_id 6QOE _atom_sites.fract_transf_matrix[1][1] 0.013406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JBB B 1 301 1 JBB LIG . D 3 HOH B 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JBB . . . C 2 -12.837 -10.244 25.006 1 81.36 ? C10 JBB 301 B 1 HETATM 2 C C13 JBB . . . C 2 -12.269 -10.109 22.748 1 89.02 ? C13 JBB 301 B 1 HETATM 3 C C15 JBB . . . C 2 -11.705 -9.838 29.787 1 75.51 ? C15 JBB 301 B 1 HETATM 4 O O01 JBB . . . C 2 -9.282 -10.058 31.161 1 77.63 -1 O01 JBB 301 B 1 HETATM 5 C C02 JBB . . . C 2 -10.183 -9.308 31.558 1 83.25 ? C02 JBB 301 B 1 HETATM 6 C C03 JBB . . . C 2 -11.235 -8.873 30.62 1 77.64 ? C03 JBB 301 B 1 HETATM 7 C C04 JBB . . . C 2 -11.708 -7.592 30.594 1 68.52 ? C04 JBB 301 B 1 HETATM 8 C C05 JBB . . . C 2 -12.683 -7.292 29.683 1 67.03 ? C05 JBB 301 B 1 HETATM 9 C C06 JBB . . . C 2 -13.156 -8.265 28.824 1 69.5 ? C06 JBB 301 B 1 HETATM 10 C C07 JBB . . . C 2 -12.678 -9.546 28.89 1 63.71 ? C07 JBB 301 B 1 HETATM 11 C C08 JBB . . . C 2 -13.153 -10.607 27.966 1 42.71 ? C08 JBB 301 B 1 HETATM 12 S S09 JBB . . . C 2 -13.322 -9.612 26.562 1 78.26 ? S09 JBB 301 B 1 HETATM 13 S S11 JBB . . . C 2 -12.495 -11.808 24.471 1 93.38 ? S11 JBB 301 B 1 HETATM 14 C C12 JBB . . . C 2 -12.12 -11.457 22.87 1 87.29 ? C12 JBB 301 B 1 HETATM 15 C C14 JBB . . . C 2 -12.648 -9.476 23.901 1 86.95 ? C14 JBB 301 B 1 HETATM 16 O O16 JBB . . . C 2 -10.222 -8.925 32.731 1 91.33 ? O16 JBB 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #