data_6QOM # _model_server_result.job_id 893icC8ygjrY2gW6eQgBsA _model_server_result.datetime_utc '2024-11-23 00:51:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6QOM # _exptl.entry_id 6QOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.112 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-nitropyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QOM _cell.length_a 73.955 _cell.length_b 79.592 _cell.length_c 85.853 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H5 N3 O2' _chem_comp.formula_weight 139.112 _chem_comp.id JBE _chem_comp.mon_nstd_flag . _chem_comp.name 3-nitropyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 N02 JBE doub 173 n n N02 O03 JBE sing 174 n n N02 C04 JBE sing 175 n n C04 C05 JBE doub 176 n y C04 C09 JBE sing 177 n y C05 C06 JBE sing 178 n y N10 C09 JBE sing 179 n n C09 N08 JBE doub 180 n y C06 C07 JBE doub 181 n y N08 C07 JBE sing 182 n y C05 H1 JBE sing 183 n n C06 H2 JBE sing 184 n n C07 H3 JBE sing 185 n n N10 H4 JBE sing 186 n n N10 H5 JBE sing 187 n n # _atom_sites.entry_id 6QOM _atom_sites.fract_transf_matrix[1][1] 0.013522 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JBE A 1 301 1 JBE LIG . D 3 HOH A 1 401 105 HOH HOH . D 3 HOH A 2 402 3 HOH HOH . D 3 HOH A 3 403 120 HOH HOH . D 3 HOH A 4 404 47 HOH HOH . D 3 HOH A 5 405 4 HOH HOH . D 3 HOH A 6 406 18 HOH HOH . D 3 HOH A 7 407 104 HOH HOH . D 3 HOH A 8 408 20 HOH HOH . D 3 HOH A 9 409 83 HOH HOH . D 3 HOH A 10 410 108 HOH HOH . D 3 HOH A 11 411 43 HOH HOH . D 3 HOH A 12 412 116 HOH HOH . D 3 HOH A 13 413 34 HOH HOH . D 3 HOH A 14 414 52 HOH HOH . D 3 HOH A 15 415 31 HOH HOH . D 3 HOH A 16 416 81 HOH HOH . D 3 HOH A 17 417 27 HOH HOH . D 3 HOH A 18 418 12 HOH HOH . D 3 HOH A 19 419 14 HOH HOH . D 3 HOH A 20 420 38 HOH HOH . D 3 HOH A 21 421 68 HOH HOH . D 3 HOH A 22 422 17 HOH HOH . D 3 HOH A 23 423 58 HOH HOH . D 3 HOH A 24 424 15 HOH HOH . D 3 HOH A 25 425 49 HOH HOH . D 3 HOH A 26 426 5 HOH HOH . D 3 HOH A 27 427 41 HOH HOH . D 3 HOH A 28 428 10 HOH HOH . D 3 HOH A 29 429 132 HOH HOH . D 3 HOH A 30 430 37 HOH HOH . D 3 HOH A 31 431 59 HOH HOH . D 3 HOH A 32 432 80 HOH HOH . D 3 HOH A 33 433 28 HOH HOH . D 3 HOH A 34 434 13 HOH HOH . D 3 HOH A 35 435 75 HOH HOH . D 3 HOH A 36 436 113 HOH HOH . D 3 HOH A 37 437 48 HOH HOH . D 3 HOH A 38 438 1 HOH HOH . D 3 HOH A 39 439 110 HOH HOH . D 3 HOH A 40 440 30 HOH HOH . D 3 HOH A 41 441 40 HOH HOH . D 3 HOH A 42 442 69 HOH HOH . D 3 HOH A 43 443 44 HOH HOH . D 3 HOH A 44 444 131 HOH HOH . D 3 HOH A 45 445 24 HOH HOH . D 3 HOH A 46 446 11 HOH HOH . D 3 HOH A 47 447 60 HOH HOH . D 3 HOH A 48 448 29 HOH HOH . D 3 HOH A 49 449 101 HOH HOH . D 3 HOH A 50 450 19 HOH HOH . D 3 HOH A 51 451 45 HOH HOH . D 3 HOH A 52 452 51 HOH HOH . D 3 HOH A 53 453 63 HOH HOH . D 3 HOH A 54 454 84 HOH HOH . D 3 HOH A 55 455 56 HOH HOH . D 3 HOH A 56 456 111 HOH HOH . D 3 HOH A 57 457 95 HOH HOH . D 3 HOH A 58 458 115 HOH HOH . D 3 HOH A 59 459 126 HOH HOH . D 3 HOH A 60 460 36 HOH HOH . D 3 HOH A 61 461 97 HOH HOH . D 3 HOH A 62 462 54 HOH HOH . D 3 HOH A 63 463 124 HOH HOH . D 3 HOH A 64 464 74 HOH HOH . D 3 HOH A 65 465 117 HOH HOH . D 3 HOH A 66 466 78 HOH HOH . D 3 HOH A 67 467 112 HOH HOH . D 3 HOH A 68 468 73 HOH HOH . D 3 HOH A 69 469 46 HOH HOH . D 3 HOH A 70 470 61 HOH HOH . D 3 HOH A 71 471 118 HOH HOH . E 3 HOH B 1 301 92 HOH HOH . E 3 HOH B 2 302 42 HOH HOH . E 3 HOH B 3 303 89 HOH HOH . E 3 HOH B 4 304 2 HOH HOH . E 3 HOH B 5 305 129 HOH HOH . E 3 HOH B 6 306 67 HOH HOH . E 3 HOH B 7 307 8 HOH HOH . E 3 HOH B 8 308 87 HOH HOH . E 3 HOH B 9 309 85 HOH HOH . E 3 HOH B 10 310 57 HOH HOH . E 3 HOH B 11 311 71 HOH HOH . E 3 HOH B 12 312 35 HOH HOH . E 3 HOH B 13 313 119 HOH HOH . E 3 HOH B 14 314 125 HOH HOH . E 3 HOH B 15 315 55 HOH HOH . E 3 HOH B 16 316 100 HOH HOH . E 3 HOH B 17 317 23 HOH HOH . E 3 HOH B 18 318 91 HOH HOH . E 3 HOH B 19 319 98 HOH HOH . E 3 HOH B 20 320 7 HOH HOH . E 3 HOH B 21 321 82 HOH HOH . E 3 HOH B 22 322 32 HOH HOH . E 3 HOH B 23 323 21 HOH HOH . E 3 HOH B 24 324 107 HOH HOH . E 3 HOH B 25 325 6 HOH HOH . E 3 HOH B 26 326 16 HOH HOH . E 3 HOH B 27 327 94 HOH HOH . E 3 HOH B 28 328 22 HOH HOH . E 3 HOH B 29 329 127 HOH HOH . E 3 HOH B 30 330 39 HOH HOH . E 3 HOH B 31 331 50 HOH HOH . E 3 HOH B 32 332 26 HOH HOH . E 3 HOH B 33 333 106 HOH HOH . E 3 HOH B 34 334 9 HOH HOH . E 3 HOH B 35 335 64 HOH HOH . E 3 HOH B 36 336 130 HOH HOH . E 3 HOH B 37 337 122 HOH HOH . E 3 HOH B 38 338 79 HOH HOH . E 3 HOH B 39 339 88 HOH HOH . E 3 HOH B 40 340 66 HOH HOH . E 3 HOH B 41 341 93 HOH HOH . E 3 HOH B 42 342 53 HOH HOH . E 3 HOH B 43 343 96 HOH HOH . E 3 HOH B 44 344 99 HOH HOH . E 3 HOH B 45 345 109 HOH HOH . E 3 HOH B 46 346 76 HOH HOH . E 3 HOH B 47 347 25 HOH HOH . E 3 HOH B 48 348 121 HOH HOH . E 3 HOH B 49 349 102 HOH HOH . E 3 HOH B 50 350 70 HOH HOH . E 3 HOH B 51 351 33 HOH HOH . E 3 HOH B 52 352 86 HOH HOH . E 3 HOH B 53 353 123 HOH HOH . E 3 HOH B 54 354 62 HOH HOH . E 3 HOH B 55 355 128 HOH HOH . E 3 HOH B 56 356 103 HOH HOH . E 3 HOH B 57 357 77 HOH HOH . E 3 HOH B 58 358 72 HOH HOH . E 3 HOH B 59 359 90 HOH HOH . E 3 HOH B 60 360 114 HOH HOH . E 3 HOH B 61 361 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 JBE . . . C 2 -20.302 15.099 -12.813 1 65.76 -1 O01 JBE 301 A 1 HETATM 2 N N02 JBE . . . C 2 -19.429 16.148 -12.72 1 68.15 1 N02 JBE 301 A 1 HETATM 3 O O03 JBE . . . C 2 -18.222 15.945 -12.685 1 76.14 ? O03 JBE 301 A 1 HETATM 4 C C04 JBE . . . C 2 -19.907 17.482 -12.656 1 61.36 ? C04 JBE 301 A 1 HETATM 5 C C05 JBE . . . C 2 -21.265 17.762 -12.653 1 61.69 ? C05 JBE 301 A 1 HETATM 6 C C06 JBE . . . C 2 -21.678 19.088 -12.588 1 66.8 ? C06 JBE 301 A 1 HETATM 7 C C07 JBE . . . C 2 -20.726 20.095 -12.524 1 69.62 ? C07 JBE 301 A 1 HETATM 8 N N08 JBE . . . C 2 -19.415 19.794 -12.526 1 68.51 ? N08 JBE 301 A 1 HETATM 9 C C09 JBE . . . C 2 -18.988 18.522 -12.591 1 66.7 ? C09 JBE 301 A 1 HETATM 10 N N10 JBE . . . C 2 -17.595 18.224 -12.595 1 60.89 ? N10 JBE 301 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #