data_6QOT # _model_server_result.job_id BY1HjRgz1ZHuFL6GL2tGgA _model_server_result.datetime_utc '2024-10-17 06:17:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 6QOT # _exptl.entry_id 6QOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QOT _cell.length_a 75.291 _cell.length_b 78.925 _cell.length_c 87.458 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 109 n n C1 C2 EDO sing 110 n n C1 H11 EDO sing 111 n n C1 H12 EDO sing 112 n n O1 HO1 EDO sing 113 n n C2 O2 EDO sing 114 n n C2 H21 EDO sing 115 n n C2 H22 EDO sing 116 n n O2 HO2 EDO sing 117 n n # _atom_sites.entry_id 6QOT _atom_sites.fract_transf_matrix[1][1] 0.013282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6SD A 1 301 2 6SD LIG . D 2 6SD B 1 301 1 6SD LIG . E 3 EDO B 1 302 1 EDO EDO . F 4 HOH A 1 401 149 HOH HOH . F 4 HOH A 2 402 42 HOH HOH . F 4 HOH A 3 403 225 HOH HOH . F 4 HOH A 4 404 82 HOH HOH . F 4 HOH A 5 405 117 HOH HOH . F 4 HOH A 6 406 189 HOH HOH . F 4 HOH A 7 407 261 HOH HOH . F 4 HOH A 8 408 29 HOH HOH . F 4 HOH A 9 409 43 HOH HOH . F 4 HOH A 10 410 246 HOH HOH . F 4 HOH A 11 411 48 HOH HOH . F 4 HOH A 12 412 45 HOH HOH . F 4 HOH A 13 413 18 HOH HOH . F 4 HOH A 14 414 22 HOH HOH . F 4 HOH A 15 415 186 HOH HOH . F 4 HOH A 16 416 87 HOH HOH . F 4 HOH A 17 417 53 HOH HOH . F 4 HOH A 18 418 49 HOH HOH . F 4 HOH A 19 419 68 HOH HOH . F 4 HOH A 20 420 254 HOH HOH . F 4 HOH A 21 421 27 HOH HOH . F 4 HOH A 22 422 260 HOH HOH . F 4 HOH A 23 423 161 HOH HOH . F 4 HOH A 24 424 38 HOH HOH . F 4 HOH A 25 425 208 HOH HOH . F 4 HOH A 26 426 52 HOH HOH . F 4 HOH A 27 427 15 HOH HOH . F 4 HOH A 28 428 257 HOH HOH . F 4 HOH A 29 429 63 HOH HOH . F 4 HOH A 30 430 32 HOH HOH . F 4 HOH A 31 431 9 HOH HOH . F 4 HOH A 32 432 131 HOH HOH . F 4 HOH A 33 433 56 HOH HOH . F 4 HOH A 34 434 109 HOH HOH . F 4 HOH A 35 435 2 HOH HOH . F 4 HOH A 36 436 30 HOH HOH . F 4 HOH A 37 437 255 HOH HOH . F 4 HOH A 38 438 5 HOH HOH . F 4 HOH A 39 439 203 HOH HOH . F 4 HOH A 40 440 137 HOH HOH . F 4 HOH A 41 441 97 HOH HOH . F 4 HOH A 42 442 111 HOH HOH . F 4 HOH A 43 443 99 HOH HOH . F 4 HOH A 44 444 7 HOH HOH . F 4 HOH A 45 445 114 HOH HOH . F 4 HOH A 46 446 170 HOH HOH . F 4 HOH A 47 447 173 HOH HOH . F 4 HOH A 48 448 64 HOH HOH . F 4 HOH A 49 449 36 HOH HOH . F 4 HOH A 50 450 218 HOH HOH . F 4 HOH A 51 451 23 HOH HOH . F 4 HOH A 52 452 35 HOH HOH . F 4 HOH A 53 453 25 HOH HOH . F 4 HOH A 54 454 13 HOH HOH . F 4 HOH A 55 455 224 HOH HOH . F 4 HOH A 56 456 129 HOH HOH . F 4 HOH A 57 457 17 HOH HOH . F 4 HOH A 58 458 135 HOH HOH . F 4 HOH A 59 459 156 HOH HOH . F 4 HOH A 60 460 128 HOH HOH . F 4 HOH A 61 461 210 HOH HOH . F 4 HOH A 62 462 181 HOH HOH . F 4 HOH A 63 463 1 HOH HOH . F 4 HOH A 64 464 155 HOH HOH . F 4 HOH A 65 465 6 HOH HOH . F 4 HOH A 66 466 51 HOH HOH . F 4 HOH A 67 467 142 HOH HOH . F 4 HOH A 68 468 78 HOH HOH . F 4 HOH A 69 469 14 HOH HOH . F 4 HOH A 70 470 60 HOH HOH . F 4 HOH A 71 471 115 HOH HOH . F 4 HOH A 72 472 4 HOH HOH . F 4 HOH A 73 473 168 HOH HOH . F 4 HOH A 74 474 98 HOH HOH . F 4 HOH A 75 475 143 HOH HOH . F 4 HOH A 76 476 153 HOH HOH . F 4 HOH A 77 477 121 HOH HOH . F 4 HOH A 78 478 100 HOH HOH . F 4 HOH A 79 479 187 HOH HOH . F 4 HOH A 80 480 167 HOH HOH . F 4 HOH A 81 481 241 HOH HOH . F 4 HOH A 82 482 95 HOH HOH . F 4 HOH A 83 483 125 HOH HOH . F 4 HOH A 84 484 61 HOH HOH . F 4 HOH A 85 485 76 HOH HOH . F 4 HOH A 86 486 112 HOH HOH . F 4 HOH A 87 487 258 HOH HOH . F 4 HOH A 88 488 44 HOH HOH . F 4 HOH A 89 489 91 HOH HOH . F 4 HOH A 90 490 69 HOH HOH . F 4 HOH A 91 491 65 HOH HOH . F 4 HOH A 92 492 160 HOH HOH . F 4 HOH A 93 493 83 HOH HOH . F 4 HOH A 94 494 190 HOH HOH . F 4 HOH A 95 495 256 HOH HOH . F 4 HOH A 96 496 41 HOH HOH . F 4 HOH A 97 497 157 HOH HOH . F 4 HOH A 98 498 108 HOH HOH . F 4 HOH A 99 499 207 HOH HOH . F 4 HOH A 100 500 89 HOH HOH . F 4 HOH A 101 501 102 HOH HOH . F 4 HOH A 102 502 58 HOH HOH . F 4 HOH A 103 503 79 HOH HOH . F 4 HOH A 104 504 104 HOH HOH . F 4 HOH A 105 505 24 HOH HOH . F 4 HOH A 106 506 132 HOH HOH . F 4 HOH A 107 507 216 HOH HOH . F 4 HOH A 108 508 55 HOH HOH . F 4 HOH A 109 509 94 HOH HOH . F 4 HOH A 110 510 198 HOH HOH . F 4 HOH A 111 511 73 HOH HOH . F 4 HOH A 112 512 230 HOH HOH . F 4 HOH A 113 513 196 HOH HOH . F 4 HOH A 114 514 179 HOH HOH . F 4 HOH A 115 515 184 HOH HOH . F 4 HOH A 116 516 232 HOH HOH . F 4 HOH A 117 517 188 HOH HOH . F 4 HOH A 118 518 219 HOH HOH . F 4 HOH A 119 519 163 HOH HOH . F 4 HOH A 120 520 236 HOH HOH . F 4 HOH A 121 521 140 HOH HOH . F 4 HOH A 122 522 233 HOH HOH . F 4 HOH A 123 523 59 HOH HOH . F 4 HOH A 124 524 205 HOH HOH . F 4 HOH A 125 525 244 HOH HOH . F 4 HOH A 126 526 162 HOH HOH . F 4 HOH A 127 527 193 HOH HOH . F 4 HOH A 128 528 238 HOH HOH . F 4 HOH A 129 529 252 HOH HOH . F 4 HOH A 130 530 251 HOH HOH . F 4 HOH A 131 531 67 HOH HOH . F 4 HOH A 132 532 165 HOH HOH . F 4 HOH A 133 533 204 HOH HOH . F 4 HOH A 134 534 191 HOH HOH . F 4 HOH A 135 535 151 HOH HOH . F 4 HOH A 136 536 159 HOH HOH . F 4 HOH A 137 537 185 HOH HOH . F 4 HOH A 138 538 174 HOH HOH . F 4 HOH A 139 539 120 HOH HOH . F 4 HOH A 140 540 118 HOH HOH . F 4 HOH A 141 541 240 HOH HOH . F 4 HOH A 142 542 215 HOH HOH . G 4 HOH B 1 401 74 HOH HOH . G 4 HOH B 2 402 84 HOH HOH . G 4 HOH B 3 403 145 HOH HOH . G 4 HOH B 4 404 228 HOH HOH . G 4 HOH B 5 405 57 HOH HOH . G 4 HOH B 6 406 46 HOH HOH . G 4 HOH B 7 407 231 HOH HOH . G 4 HOH B 8 408 141 HOH HOH . G 4 HOH B 9 409 133 HOH HOH . G 4 HOH B 10 410 178 HOH HOH . G 4 HOH B 11 411 176 HOH HOH . G 4 HOH B 12 412 28 HOH HOH . G 4 HOH B 13 413 158 HOH HOH . G 4 HOH B 14 414 164 HOH HOH . G 4 HOH B 15 415 20 HOH HOH . G 4 HOH B 16 416 147 HOH HOH . G 4 HOH B 17 417 144 HOH HOH . G 4 HOH B 18 418 26 HOH HOH . G 4 HOH B 19 419 223 HOH HOH . G 4 HOH B 20 420 85 HOH HOH . G 4 HOH B 21 421 3 HOH HOH . G 4 HOH B 22 422 171 HOH HOH . G 4 HOH B 23 423 66 HOH HOH . G 4 HOH B 24 424 192 HOH HOH . G 4 HOH B 25 425 54 HOH HOH . G 4 HOH B 26 426 71 HOH HOH . G 4 HOH B 27 427 169 HOH HOH . G 4 HOH B 28 428 195 HOH HOH . G 4 HOH B 29 429 12 HOH HOH . G 4 HOH B 30 430 110 HOH HOH . G 4 HOH B 31 431 10 HOH HOH . G 4 HOH B 32 432 217 HOH HOH . G 4 HOH B 33 433 37 HOH HOH . G 4 HOH B 34 434 130 HOH HOH . G 4 HOH B 35 435 127 HOH HOH . G 4 HOH B 36 436 21 HOH HOH . G 4 HOH B 37 437 234 HOH HOH . G 4 HOH B 38 438 227 HOH HOH . G 4 HOH B 39 439 211 HOH HOH . G 4 HOH B 40 440 107 HOH HOH . G 4 HOH B 41 441 92 HOH HOH . G 4 HOH B 42 442 249 HOH HOH . G 4 HOH B 43 443 103 HOH HOH . G 4 HOH B 44 444 90 HOH HOH . G 4 HOH B 45 445 134 HOH HOH . G 4 HOH B 46 446 93 HOH HOH . G 4 HOH B 47 447 33 HOH HOH . G 4 HOH B 48 448 50 HOH HOH . G 4 HOH B 49 449 206 HOH HOH . G 4 HOH B 50 450 47 HOH HOH . G 4 HOH B 51 451 19 HOH HOH . G 4 HOH B 52 452 11 HOH HOH . G 4 HOH B 53 453 126 HOH HOH . G 4 HOH B 54 454 213 HOH HOH . G 4 HOH B 55 455 8 HOH HOH . G 4 HOH B 56 456 101 HOH HOH . G 4 HOH B 57 457 40 HOH HOH . G 4 HOH B 58 458 72 HOH HOH . G 4 HOH B 59 459 16 HOH HOH . G 4 HOH B 60 460 237 HOH HOH . G 4 HOH B 61 461 88 HOH HOH . G 4 HOH B 62 462 75 HOH HOH . G 4 HOH B 63 463 245 HOH HOH . G 4 HOH B 64 464 136 HOH HOH . G 4 HOH B 65 465 81 HOH HOH . G 4 HOH B 66 466 139 HOH HOH . G 4 HOH B 67 467 34 HOH HOH . G 4 HOH B 68 468 31 HOH HOH . G 4 HOH B 69 469 247 HOH HOH . G 4 HOH B 70 470 106 HOH HOH . G 4 HOH B 71 471 39 HOH HOH . G 4 HOH B 72 472 150 HOH HOH . G 4 HOH B 73 473 105 HOH HOH . G 4 HOH B 74 474 222 HOH HOH . G 4 HOH B 75 475 259 HOH HOH . G 4 HOH B 76 476 152 HOH HOH . G 4 HOH B 77 477 172 HOH HOH . G 4 HOH B 78 478 122 HOH HOH . G 4 HOH B 79 479 199 HOH HOH . G 4 HOH B 80 480 123 HOH HOH . G 4 HOH B 81 481 86 HOH HOH . G 4 HOH B 82 482 96 HOH HOH . G 4 HOH B 83 483 180 HOH HOH . G 4 HOH B 84 484 239 HOH HOH . G 4 HOH B 85 485 201 HOH HOH . G 4 HOH B 86 486 243 HOH HOH . G 4 HOH B 87 487 235 HOH HOH . G 4 HOH B 88 488 124 HOH HOH . G 4 HOH B 89 489 177 HOH HOH . G 4 HOH B 90 490 77 HOH HOH . G 4 HOH B 91 491 62 HOH HOH . G 4 HOH B 92 492 194 HOH HOH . G 4 HOH B 93 493 248 HOH HOH . G 4 HOH B 94 494 200 HOH HOH . G 4 HOH B 95 495 146 HOH HOH . G 4 HOH B 96 496 70 HOH HOH . G 4 HOH B 97 497 242 HOH HOH . G 4 HOH B 98 498 209 HOH HOH . G 4 HOH B 99 499 212 HOH HOH . G 4 HOH B 100 500 214 HOH HOH . G 4 HOH B 101 501 250 HOH HOH . G 4 HOH B 102 502 116 HOH HOH . G 4 HOH B 103 503 80 HOH HOH . G 4 HOH B 104 504 182 HOH HOH . G 4 HOH B 105 505 197 HOH HOH . G 4 HOH B 106 506 221 HOH HOH . G 4 HOH B 107 507 183 HOH HOH . G 4 HOH B 108 508 166 HOH HOH . G 4 HOH B 109 509 253 HOH HOH . G 4 HOH B 110 510 154 HOH HOH . G 4 HOH B 111 511 229 HOH HOH . G 4 HOH B 112 512 226 HOH HOH . G 4 HOH B 113 513 119 HOH HOH . G 4 HOH B 114 514 138 HOH HOH . G 4 HOH B 115 515 113 HOH HOH . G 4 HOH B 116 516 220 HOH HOH . G 4 HOH B 117 517 175 HOH HOH . G 4 HOH B 118 518 148 HOH HOH . G 4 HOH B 119 519 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -9.355 10.045 -30.4 1 37.38 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . E 3 -8.973 8.766 -29.871 1 42.38 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . E 3 -8.797 10.249 -31.8 1 43.72 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . E 3 -7.48 9.699 -31.916 1 30.94 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #