data_6QP3
#
_model_server_result.job_id            23oKQwCmTIqSZle2fIoBdA 
_model_server_result.datetime_utc      '2024-10-19 05:25:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":802}' 
#
_entry.id    6QP3 
#
_exptl.entry_id    6QP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QP3 
_cell.length_a            75.279 
_cell.length_b            105.526 
_cell.length_c            209.576 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,K,L,M,P 1 1 
B,C,G,H,I,J,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 234 A LYS 234 1_555 F C4A PLP . A PLP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.239 ? 
covale ? covale2 B NZ LYS 234 B LYS 234 1_555 H C4A PLP . B PLP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.254 ? 
covale ? covale3 C NZ LYS 234 C LYS 234 1_555 J C4A PLP . C PLP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.259 ? 
covale ? covale4 D NZ LYS 234 D LYS 234 1_555 L C4A PLP . D PLP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 266 n y 
N1 C6 PLP sing 267 n y 
C2 C2A PLP sing 268 n n 
C2 C3 PLP sing 269 n y 
C2A H2A1 PLP sing 270 n n 
C2A H2A2 PLP sing 271 n n 
C2A H2A3 PLP sing 272 n n 
C3 O3 PLP sing 273 n n 
C3 C4 PLP doub 274 n y 
O3 HO3 PLP sing 275 n n 
C4 C4A PLP sing 276 n n 
C4 C5 PLP sing 277 n y 
C4A O4A PLP doub 278 n n 
C4A H4A PLP sing 279 n n 
C5 C6 PLP doub 280 n y 
C5 C5A PLP sing 281 n n 
C6 H6 PLP sing 282 n n 
C5A O4P PLP sing 283 n n 
C5A H5A1 PLP sing 284 n n 
C5A H5A2 PLP sing 285 n n 
O4P P PLP sing 286 n n 
P O1P PLP doub 287 n n 
P O2P PLP sing 288 n n 
P O3P PLP sing 289 n n 
O2P HOP2 PLP sing 290 n n 
O3P HOP3 PLP sing 291 n n 
#
_atom_sites.entry_id                     6QP3 
_atom_sites.fract_transf_matrix[1][1]    0.013284 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009476 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004772 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ACT A 1 801 801 ACT ACT . 
F 3 PLP A 1 802 234 PLP LLP . 
G 2 ACT B 1 801 801 ACT ACT . 
H 3 PLP B 1 802 234 PLP LLP . 
I 2 ACT C 1 801 801 ACT ACT . 
J 3 PLP C 1 802 234 PLP LLP . 
K 2 ACT D 1 801 801 ACT ACT . 
L 3 PLP D 1 802 234 PLP LLP . 
M 4 HOH A 1 901 29 HOH HOH . 
M 4 HOH A 2 902 24 HOH HOH . 
M 4 HOH A 3 903 38 HOH HOH . 
M 4 HOH A 4 904 20 HOH HOH . 
M 4 HOH A 5 905 36 HOH HOH . 
M 4 HOH A 6 906 71 HOH HOH . 
M 4 HOH A 7 907 21 HOH HOH . 
M 4 HOH A 8 908 41 HOH HOH . 
M 4 HOH A 9 909 80 HOH HOH . 
M 4 HOH A 10 910 51 HOH HOH . 
M 4 HOH A 11 911 79 HOH HOH . 
M 4 HOH A 12 912 39 HOH HOH . 
M 4 HOH A 13 913 57 HOH HOH . 
M 4 HOH A 14 914 60 HOH HOH . 
M 4 HOH A 15 915 12 HOH HOH . 
M 4 HOH A 16 916 8 HOH HOH . 
M 4 HOH A 17 917 3 HOH HOH . 
N 4 HOH B 1 901 61 HOH HOH . 
N 4 HOH B 2 902 55 HOH HOH . 
N 4 HOH B 3 903 76 HOH HOH . 
N 4 HOH B 4 904 56 HOH HOH . 
N 4 HOH B 5 905 19 HOH HOH . 
N 4 HOH B 6 906 40 HOH HOH . 
N 4 HOH B 7 907 81 HOH HOH . 
N 4 HOH B 8 908 49 HOH HOH . 
N 4 HOH B 9 909 68 HOH HOH . 
N 4 HOH B 10 910 34 HOH HOH . 
N 4 HOH B 11 911 70 HOH HOH . 
N 4 HOH B 12 912 2 HOH HOH . 
N 4 HOH B 13 913 84 HOH HOH . 
N 4 HOH B 14 914 22 HOH HOH . 
N 4 HOH B 15 915 63 HOH HOH . 
N 4 HOH B 16 916 59 HOH HOH . 
N 4 HOH B 17 917 45 HOH HOH . 
N 4 HOH B 18 918 30 HOH HOH . 
N 4 HOH B 19 919 6 HOH HOH . 
N 4 HOH B 20 920 52 HOH HOH . 
N 4 HOH B 21 921 46 HOH HOH . 
N 4 HOH B 22 922 62 HOH HOH . 
N 4 HOH B 23 923 74 HOH HOH . 
N 4 HOH B 24 924 65 HOH HOH . 
N 4 HOH B 25 925 4 HOH HOH . 
N 4 HOH B 26 926 7 HOH HOH . 
N 4 HOH B 27 927 1 HOH HOH . 
N 4 HOH B 28 928 83 HOH HOH . 
N 4 HOH B 29 929 67 HOH HOH . 
N 4 HOH B 30 930 69 HOH HOH . 
O 4 HOH C 1 901 72 HOH HOH . 
O 4 HOH C 2 902 28 HOH HOH . 
O 4 HOH C 3 903 35 HOH HOH . 
O 4 HOH C 4 904 75 HOH HOH . 
O 4 HOH C 5 905 64 HOH HOH . 
O 4 HOH C 6 906 26 HOH HOH . 
O 4 HOH C 7 907 82 HOH HOH . 
O 4 HOH C 8 908 25 HOH HOH . 
O 4 HOH C 9 909 43 HOH HOH . 
O 4 HOH C 10 910 73 HOH HOH . 
O 4 HOH C 11 911 33 HOH HOH . 
O 4 HOH C 12 912 11 HOH HOH . 
O 4 HOH C 13 913 23 HOH HOH . 
O 4 HOH C 14 914 14 HOH HOH . 
O 4 HOH C 15 915 37 HOH HOH . 
O 4 HOH C 16 916 50 HOH HOH . 
O 4 HOH C 17 917 15 HOH HOH . 
P 4 HOH D 1 901 18 HOH HOH . 
P 4 HOH D 2 902 32 HOH HOH . 
P 4 HOH D 3 903 53 HOH HOH . 
P 4 HOH D 4 904 54 HOH HOH . 
P 4 HOH D 5 905 78 HOH HOH . 
P 4 HOH D 6 906 27 HOH HOH . 
P 4 HOH D 7 907 44 HOH HOH . 
P 4 HOH D 8 908 47 HOH HOH . 
P 4 HOH D 9 909 77 HOH HOH . 
P 4 HOH D 10 910 31 HOH HOH . 
P 4 HOH D 11 911 16 HOH HOH . 
P 4 HOH D 12 912 66 HOH HOH . 
P 4 HOH D 13 913 17 HOH HOH . 
P 4 HOH D 14 914 58 HOH HOH . 
P 4 HOH D 15 915 10 HOH HOH . 
P 4 HOH D 16 916 5 HOH HOH . 
P 4 HOH D 17 917 9 HOH HOH . 
P 4 HOH D 18 918 48 HOH HOH . 
P 4 HOH D 19 919 13 HOH HOH . 
P 4 HOH D 20 920 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . F 3 -20.504 -10.385 14.531 1 20 ? N1 PLP 802 A 1 
HETATM 2 C C2 PLP . . . F 3 -20.35 -9.883 13.319 1 20 ? C2 PLP 802 A 1 
HETATM 3 C C2A PLP . . . F 3 -20.14 -8.416 13.16 1 20 ? C2A PLP 802 A 1 
HETATM 4 C C3 PLP . . . F 3 -20.392 -10.707 12.21 1 20 ? C3 PLP 802 A 1 
HETATM 5 O O3 PLP . . . F 3 -20.229 -10.149 11.012 1 20 ? O3 PLP 802 A 1 
HETATM 6 C C4 PLP . . . F 3 -20.571 -12.077 12.371 1 20 ? C4 PLP 802 A 1 
HETATM 7 C C4A PLP . . . F 3 -20.644 -12.928 11.202 1 20 ? C4A PLP 802 A 1 
HETATM 8 C C5 PLP . . . F 3 -20.738 -12.586 13.665 1 20 ? C5 PLP 802 A 1 
HETATM 9 C C6 PLP . . . F 3 -20.693 -11.7 14.695 1 20 ? C6 PLP 802 A 1 
HETATM 10 C C5A PLP . . . F 3 -20.958 -14.049 13.931 1 20 ? C5A PLP 802 A 1 
HETATM 11 O O4P PLP . . . F 3 -20.516 -14.519 15.241 1 20 ? O4P PLP 802 A 1 
HETATM 12 P P PLP . . . F 3 -20.456 -16.061 15.578 1 20 ? P PLP 802 A 1 
HETATM 13 O O1P PLP . . . F 3 -20.316 -16.714 14.292 1 20 ? O1P PLP 802 A 1 
HETATM 14 O O2P PLP . . . F 3 -19.278 -16.288 16.377 1 20 ? O2P PLP 802 A 1 
HETATM 15 O O3P PLP . . . F 3 -21.704 -16.332 16.265 1 20 ? O3P PLP 802 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#