data_6QP6 # _model_server_result.job_id 4-frNNRoabxP-TF5wylsLA _model_server_result.datetime_utc '2025-08-31 23:03:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 6QP6 # _exptl.entry_id 6QP6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 566.728 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 331 A CYS 331 1_555 A SG CYS 372 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 338 A CYS 338 1_555 A SG CYS 365 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf3 A SG CYS 349 A CYS 349 1_555 A SG CYS 807 A CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 596 A CYS 596 1_555 A SG CYS 601 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 331 B CYS 331 1_555 B SG CYS 372 B CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 B SG CYS 338 B CYS 338 1_555 B SG CYS 365 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf7 B SG CYS 349 B CYS 349 1_555 B SG CYS 807 B CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 B SG CYS 596 B CYS 596 1_555 B SG CYS 601 B CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A OE1 GLU 395 A GLU 395 1_555 F CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc2 A OD1 ASN 621 A ASN 621 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 A OE1 GLU 624 A GLU 624 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 A OE2 GLU 624 A GLU 624 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc5 A OE1 GLU 667 A GLU 667 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc6 A OE2 GLU 670 A GLU 670 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc7 A OE1 GLU 670 A GLU 670 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 A OE1 GLU 699 A GLU 699 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc9 A OE2 GLU 699 A GLU 699 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc10 A OE2 GLU 699 A GLU 699 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc11 A OD1 ASP 703 A ASP 703 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc12 A OD2 ASP 703 A ASP 703 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc13 A O SER 854 A SER 854 1_555 F CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc14 A O ILE 857 A ILE 857 1_555 F CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc15 A OD1 ASP 859 A ASP 859 1_555 F CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc16 B OE1 GLU 395 B GLU 395 1_555 J CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc17 B OD1 ASN 621 B ASN 621 1_555 G CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc18 B OE1 GLU 624 B GLU 624 1_555 G CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc19 B OE2 GLU 624 B GLU 624 1_555 H CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc20 B OE1 GLU 667 B GLU 667 1_555 H CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc21 B OE2 GLU 670 B GLU 670 1_555 G CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc22 B OE1 GLU 670 B GLU 670 1_555 H CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc23 B OE1 GLU 699 B GLU 699 1_555 G CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc24 B OE2 GLU 699 B GLU 699 1_555 G CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc25 B OE2 GLU 699 B GLU 699 1_555 H CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc26 B OD1 ASP 703 B ASP 703 1_555 H CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc27 B OD2 ASP 703 B ASP 703 1_555 H CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc28 B O SER 854 B SER 854 1_555 J CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc29 B O ILE 857 B ILE 857 1_555 J CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc30 B OD1 ASP 859 B ASP 859 1_555 J CA CA . B CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? # _chem_comp.formula 'C28 H57 N O8 P 1' _chem_comp.formula_weight 566.728 _chem_comp.id P1O _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 P1O sing 235 n n O1 H1P P1O sing 236 n n O2 P1 P1O doub 237 n n P1 O3 P1O sing 238 n n P1 O4 P1O sing 239 n n O3 C1 P1O sing 240 n n C1 C2 P1O sing 241 n n C1 H1 P1O sing 242 n n C1 H2 P1O sing 243 n n C2 N1 P1O sing 244 n n C2 H3 P1O sing 245 n n C2 H4 P1O sing 246 n n N1 C3 P1O sing 247 n n N1 C4 P1O sing 248 n n N1 C5 P1O sing 249 n n C3 H5 P1O sing 250 n n C3 H6 P1O sing 251 n n C3 H7 P1O sing 252 n n C4 H8 P1O sing 253 n n C4 H9 P1O sing 254 n n C4 H10 P1O sing 255 n n C5 H11 P1O sing 256 n n C5 H12 P1O sing 257 n n C5 H13 P1O sing 258 n n O4 C6 P1O sing 259 n n C6 C7 P1O sing 260 n n C6 H14 P1O sing 261 n n C6 H15 P1O sing 262 n n C7 C8 P1O sing 263 n n C7 O7 P1O sing 264 n n C7 H16 P1O sing 265 n n C8 O5 P1O sing 266 n n C8 H17 P1O sing 267 n n C8 H18 P1O sing 268 n n O5 C9 P1O sing 269 n n C9 O6 P1O doub 270 n n C9 C10 P1O sing 271 n n C10 C11 P1O sing 272 n n C10 H19 P1O sing 273 n n C10 H20 P1O sing 274 n n C11 C12 P1O sing 275 n n C11 H21 P1O sing 276 n n C11 H22 P1O sing 277 n n C12 C13 P1O sing 278 n n C12 H23 P1O sing 279 n n C12 H24 P1O sing 280 n n C13 C14 P1O sing 281 n n C13 H25 P1O sing 282 n n C13 H26 P1O sing 283 n n C14 C15 P1O sing 284 n n C14 H27 P1O sing 285 n n C14 H28 P1O sing 286 n n C15 C16 P1O sing 287 n n C15 H29 P1O sing 288 n n C15 H30 P1O sing 289 n n C16 C17 P1O sing 290 n n C16 H31 P1O sing 291 n n C16 H32 P1O sing 292 n n C17 C18 P1O sing 293 n n C17 H33 P1O sing 294 n n C17 H34 P1O sing 295 n n C18 H35 P1O sing 296 n n C18 H36 P1O sing 297 n n C18 H37 P1O sing 298 n n O7 C19 P1O sing 299 n n C19 O8 P1O doub 300 n n C19 C20 P1O sing 301 n n C20 C21 P1O sing 302 n n C20 H38 P1O sing 303 n n C20 H39 P1O sing 304 n n C21 C22 P1O sing 305 n n C21 H40 P1O sing 306 n n C21 H41 P1O sing 307 n n C22 C23 P1O sing 308 n n C22 H42 P1O sing 309 n n C22 H43 P1O sing 310 n n C23 C24 P1O sing 311 n n C23 H44 P1O sing 312 n n C23 H45 P1O sing 313 n n C24 C25 P1O sing 314 n n C24 H46 P1O sing 315 n n C24 H47 P1O sing 316 n n C25 C26 P1O sing 317 n n C25 H48 P1O sing 318 n n C25 H49 P1O sing 319 n n C26 C27 P1O sing 320 n n C26 H50 P1O sing 321 n n C26 H51 P1O sing 322 n n C27 C28 P1O sing 323 n n C27 H52 P1O sing 324 n n C27 H53 P1O sing 325 n n C28 H54 P1O sing 326 n n C28 H55 P1O sing 327 n n C28 H56 P1O sing 328 n n # _atom_sites.entry_id 6QP6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 1001 901 CA CA . D 2 CA A 1 1002 902 CA CA . E 3 P1O A 1 1003 1001 P1O 1 . F 2 CA A 1 1004 1 CA CA . G 2 CA B 1 1001 901 CA CA . H 2 CA B 1 1002 902 CA CA . I 3 P1O B 1 1003 1001 P1O 1 . J 2 CA B 1 1004 2 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P1O . . . E 3 115.31 99.912 136.07 1 34.79 ? O1 P1O 1003 A 1 HETATM 2 O O2 P1O . . . E 3 114.841 101.214 138.271 1 34.79 ? O2 P1O 1003 A 1 HETATM 3 P P1 P1O . . . E 3 114.368 100.514 137.05 1 34.79 ? P1 P1O 1003 A 1 HETATM 4 O O3 P1O . . . E 3 113.465 99.133 137.707 1 34.79 ? O3 P1O 1003 A 1 HETATM 5 C C1 P1O . . . E 3 113.969 98.483 138.785 1 34.79 ? C1 P1O 1003 A 1 HETATM 6 C C2 P1O . . . E 3 115.157 97.535 138.353 1 34.79 ? C2 P1O 1003 A 1 HETATM 7 N N1 P1O . . . E 3 115.944 97.012 139.573 1 34.79 ? N1 P1O 1003 A 1 HETATM 8 C C3 P1O . . . E 3 114.988 96.373 140.556 1 34.79 ? C3 P1O 1003 A 1 HETATM 9 C C4 P1O . . . E 3 116.687 98.15 140.207 1 34.79 ? C4 P1O 1003 A 1 HETATM 10 C C5 P1O . . . E 3 116.958 95.995 139.192 1 34.79 ? C5 P1O 1003 A 1 HETATM 11 O O4 P1O . . . E 3 113.157 101.3 136.177 1 34.79 ? O4 P1O 1003 A 1 HETATM 12 C C6 P1O . . . E 3 112.704 100.898 134.938 1 34.79 ? C6 P1O 1003 A 1 HETATM 13 C C7 P1O . . . E 3 111.183 101.147 134.761 1 34.79 ? C7 P1O 1003 A 1 HETATM 14 C C8 P1O . . . E 3 110.549 100.116 133.755 1 34.79 ? C8 P1O 1003 A 1 HETATM 15 O O5 P1O . . . E 3 111.498 99.703 132.742 1 34.79 ? O5 P1O 1003 A 1 HETATM 16 C C9 P1O . . . E 3 111.227 100.145 131.46 1 34.79 ? C9 P1O 1003 A 1 HETATM 17 O O6 P1O . . . E 3 110.492 101.075 131.314 1 34.79 ? O6 P1O 1003 A 1 HETATM 18 C C10 P1O . . . E 3 111.879 99.423 130.252 1 34.79 ? C10 P1O 1003 A 1 HETATM 19 C C11 P1O . . . E 3 111.018 99.553 128.955 1 34.79 ? C11 P1O 1003 A 1 HETATM 20 C C12 P1O . . . E 3 111.761 100.04 127.676 1 34.79 ? C12 P1O 1003 A 1 HETATM 21 C C13 P1O . . . E 3 110.932 100.055 126.354 1 34.79 ? C13 P1O 1003 A 1 HETATM 22 C C14 P1O . . . E 3 111.693 99.637 125.062 1 34.79 ? C14 P1O 1003 A 1 HETATM 23 C C15 P1O . . . E 3 111.105 100.135 123.706 1 34.79 ? C15 P1O 1003 A 1 HETATM 24 C C16 P1O . . . E 3 112.122 100.281 122.526 1 34.79 ? C16 P1O 1003 A 1 HETATM 25 C C17 P1O . . . E 3 111.539 100.739 121.16 1 34.79 ? C17 P1O 1003 A 1 HETATM 26 C C18 P1O . . . E 3 110.128 101.363 121.193 1 34.79 ? C18 P1O 1003 A 1 HETATM 27 O O7 P1O . . . E 3 110.96 102.488 134.21 1 34.79 ? O7 P1O 1003 A 1 HETATM 28 C C19 P1O . . . E 3 109.792 103.196 134.555 1 34.79 ? C19 P1O 1003 A 1 HETATM 29 O O8 P1O . . . E 3 109.12 102.834 135.473 1 34.79 ? O8 P1O 1003 A 1 HETATM 30 C C20 P1O . . . E 3 109.402 104.468 133.698 1 34.79 ? C20 P1O 1003 A 1 HETATM 31 C C21 P1O . . . E 3 108.494 104.161 132.468 1 34.79 ? C21 P1O 1003 A 1 HETATM 32 C C22 P1O . . . E 3 108.849 104.849 131.113 1 34.79 ? C22 P1O 1003 A 1 HETATM 33 C C23 P1O . . . E 3 109.049 103.89 129.904 1 34.79 ? C23 P1O 1003 A 1 HETATM 34 C C24 P1O . . . E 3 108.632 104.402 128.487 1 34.79 ? C24 P1O 1003 A 1 HETATM 35 C C25 P1O . . . E 3 109.546 103.943 127.314 1 34.79 ? C25 P1O 1003 A 1 HETATM 36 C C26 P1O . . . E 3 108.897 103.468 125.964 1 34.79 ? C26 P1O 1003 A 1 HETATM 37 C C27 P1O . . . E 3 107.371 103.628 125.813 1 34.79 ? C27 P1O 1003 A 1 HETATM 38 C C28 P1O . . . E 3 106.858 103.476 124.37 1 34.79 ? C28 P1O 1003 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 668 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #