data_6QPB # _model_server_result.job_id bvhj1WHTpxlp2cAs_YEeug _model_server_result.datetime_utc '2024-12-24 13:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 6QPB # _exptl.entry_id 6QPB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 566.728 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 338 A CYS 338 1_555 A SG CYS 365 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 349 A CYS 349 1_555 A SG CYS 807 A CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 596 A CYS 596 1_555 A SG CYS 601 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 338 B CYS 338 1_555 B SG CYS 365 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 B SG CYS 349 B CYS 349 1_555 B SG CYS 807 B CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 B SG CYS 596 B CYS 596 1_555 B SG CYS 601 B CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C28 H57 N O8 P 1' _chem_comp.formula_weight 566.728 _chem_comp.id P1O _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 P1O sing 235 n n O1 H1P P1O sing 236 n n O2 P1 P1O doub 237 n n P1 O3 P1O sing 238 n n P1 O4 P1O sing 239 n n O3 C1 P1O sing 240 n n C1 C2 P1O sing 241 n n C1 H1 P1O sing 242 n n C1 H2 P1O sing 243 n n C2 N1 P1O sing 244 n n C2 H3 P1O sing 245 n n C2 H4 P1O sing 246 n n N1 C3 P1O sing 247 n n N1 C4 P1O sing 248 n n N1 C5 P1O sing 249 n n C3 H5 P1O sing 250 n n C3 H6 P1O sing 251 n n C3 H7 P1O sing 252 n n C4 H8 P1O sing 253 n n C4 H9 P1O sing 254 n n C4 H10 P1O sing 255 n n C5 H11 P1O sing 256 n n C5 H12 P1O sing 257 n n C5 H13 P1O sing 258 n n O4 C6 P1O sing 259 n n C6 C7 P1O sing 260 n n C6 H14 P1O sing 261 n n C6 H15 P1O sing 262 n n C7 C8 P1O sing 263 n n C7 O7 P1O sing 264 n n C7 H16 P1O sing 265 n n C8 O5 P1O sing 266 n n C8 H17 P1O sing 267 n n C8 H18 P1O sing 268 n n O5 C9 P1O sing 269 n n C9 O6 P1O doub 270 n n C9 C10 P1O sing 271 n n C10 C11 P1O sing 272 n n C10 H19 P1O sing 273 n n C10 H20 P1O sing 274 n n C11 C12 P1O sing 275 n n C11 H21 P1O sing 276 n n C11 H22 P1O sing 277 n n C12 C13 P1O sing 278 n n C12 H23 P1O sing 279 n n C12 H24 P1O sing 280 n n C13 C14 P1O sing 281 n n C13 H25 P1O sing 282 n n C13 H26 P1O sing 283 n n C14 C15 P1O sing 284 n n C14 H27 P1O sing 285 n n C14 H28 P1O sing 286 n n C15 C16 P1O sing 287 n n C15 H29 P1O sing 288 n n C15 H30 P1O sing 289 n n C16 C17 P1O sing 290 n n C16 H31 P1O sing 291 n n C16 H32 P1O sing 292 n n C17 C18 P1O sing 293 n n C17 H33 P1O sing 294 n n C17 H34 P1O sing 295 n n C18 H35 P1O sing 296 n n C18 H36 P1O sing 297 n n C18 H37 P1O sing 298 n n O7 C19 P1O sing 299 n n C19 O8 P1O doub 300 n n C19 C20 P1O sing 301 n n C20 C21 P1O sing 302 n n C20 H38 P1O sing 303 n n C20 H39 P1O sing 304 n n C21 C22 P1O sing 305 n n C21 H40 P1O sing 306 n n C21 H41 P1O sing 307 n n C22 C23 P1O sing 308 n n C22 H42 P1O sing 309 n n C22 H43 P1O sing 310 n n C23 C24 P1O sing 311 n n C23 H44 P1O sing 312 n n C23 H45 P1O sing 313 n n C24 C25 P1O sing 314 n n C24 H46 P1O sing 315 n n C24 H47 P1O sing 316 n n C25 C26 P1O sing 317 n n C25 H48 P1O sing 318 n n C25 H49 P1O sing 319 n n C26 C27 P1O sing 320 n n C26 H50 P1O sing 321 n n C26 H51 P1O sing 322 n n C27 C28 P1O sing 323 n n C27 H52 P1O sing 324 n n C27 H53 P1O sing 325 n n C28 H54 P1O sing 326 n n C28 H55 P1O sing 327 n n C28 H56 P1O sing 328 n n # _atom_sites.entry_id 6QPB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P1O A 1 1001 901 P1O 1 . D 2 P1O B 1 1001 901 P1O 1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P1O . . . C 2 114.36 99.927 135.598 1 49.88 ? O1 P1O 1001 A 1 HETATM 2 O O2 P1O . . . C 2 115.066 102.009 136.982 1 49.88 ? O2 P1O 1001 A 1 HETATM 3 P P1 P1O . . . C 2 114.052 101 136.577 1 49.88 ? P1 P1O 1001 A 1 HETATM 4 O O3 P1O . . . C 2 113.723 100.112 138.08 1 49.88 ? O3 P1O 1001 A 1 HETATM 5 C C1 P1O . . . C 2 114.313 98.908 138.257 1 49.88 ? C1 P1O 1001 A 1 HETATM 6 C C2 P1O . . . C 2 115.829 99.113 138.555 1 49.88 ? C2 P1O 1001 A 1 HETATM 7 N N1 P1O . . . C 2 116.188 98.673 139.981 1 49.88 ? N1 P1O 1001 A 1 HETATM 8 C C3 P1O . . . C 2 115.919 97.193 140.145 1 49.88 ? C3 P1O 1001 A 1 HETATM 9 C C4 P1O . . . C 2 115.351 99.449 140.973 1 49.88 ? C4 P1O 1001 A 1 HETATM 10 C C5 P1O . . . C 2 117.645 98.943 140.271 1 49.88 ? C5 P1O 1001 A 1 HETATM 11 O O4 P1O . . . C 2 112.497 101.584 136.246 1 49.88 ? O4 P1O 1001 A 1 HETATM 12 C C6 P1O . . . C 2 111.353 100.795 136.259 1 49.88 ? C6 P1O 1001 A 1 HETATM 13 C C7 P1O . . . C 2 110.265 101.307 135.272 1 49.88 ? C7 P1O 1001 A 1 HETATM 14 C C8 P1O . . . C 2 110.104 100.379 133.993 1 49.88 ? C8 P1O 1001 A 1 HETATM 15 O O5 P1O . . . C 2 111.284 100.373 133.147 1 49.88 ? O5 P1O 1001 A 1 HETATM 16 C C9 P1O . . . C 2 111.175 99.637 131.967 1 49.88 ? C9 P1O 1001 A 1 HETATM 17 O O6 P1O . . . C 2 110.605 98.584 131.983 1 49.88 ? O6 P1O 1001 A 1 HETATM 18 C C10 P1O . . . C 2 111.79 100.221 130.654 1 49.88 ? C10 P1O 1001 A 1 HETATM 19 C C11 P1O . . . C 2 111.07 99.719 129.35 1 49.88 ? C11 P1O 1001 A 1 HETATM 20 C C12 P1O . . . C 2 111.82 99.995 128.009 1 49.88 ? C12 P1O 1001 A 1 HETATM 21 C C13 P1O . . . C 2 111.031 99.713 126.688 1 49.88 ? C13 P1O 1001 A 1 HETATM 22 C C14 P1O . . . C 2 111.905 99.446 125.417 1 49.88 ? C14 P1O 1001 A 1 HETATM 23 C C15 P1O . . . C 2 111.373 100.024 124.063 1 49.88 ? C15 P1O 1001 A 1 HETATM 24 C C16 P1O . . . C 2 112.312 99.851 122.826 1 49.88 ? C16 P1O 1001 A 1 HETATM 25 C C17 P1O . . . C 2 111.804 100.451 121.485 1 49.88 ? C17 P1O 1001 A 1 HETATM 26 C C18 P1O . . . C 2 110.709 101.53 121.605 1 49.88 ? C18 P1O 1001 A 1 HETATM 27 O O7 P1O . . . C 2 110.603 102.638 134.796 1 49.88 ? O7 P1O 1001 A 1 HETATM 28 C C19 P1O . . . C 2 109.578 103.588 134.718 1 49.88 ? C19 P1O 1001 A 1 HETATM 29 O O8 P1O . . . C 2 108.741 103.635 135.57 1 49.88 ? O8 P1O 1001 A 1 HETATM 30 C C20 P1O . . . C 2 109.563 104.571 133.483 1 49.88 ? C20 P1O 1001 A 1 HETATM 31 C C21 P1O . . . C 2 108.688 104.09 132.279 1 49.88 ? C21 P1O 1001 A 1 HETATM 32 C C22 P1O . . . C 2 109.06 104.646 130.86 1 49.88 ? C22 P1O 1001 A 1 HETATM 33 C C23 P1O . . . C 2 108.87 103.652 129.672 1 49.88 ? C23 P1O 1001 A 1 HETATM 34 C C24 P1O . . . C 2 109.104 104.211 128.231 1 49.88 ? C24 P1O 1001 A 1 HETATM 35 C C25 P1O . . . C 2 109.044 103.165 127.067 1 49.88 ? C25 P1O 1001 A 1 HETATM 36 C C26 P1O . . . C 2 108.495 103.649 125.689 1 49.88 ? C26 P1O 1001 A 1 HETATM 37 C C27 P1O . . . C 2 107.215 102.918 125.204 1 49.88 ? C27 P1O 1001 A 1 HETATM 38 C C28 P1O . . . C 2 106.714 103.326 123.811 1 49.88 ? C28 P1O 1001 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #