data_6QPB
#
_model_server_result.job_id            yraZ9Lb2zjRJQFFtbhl26w 
_model_server_result.datetime_utc      '2024-12-24 12:46:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    6QPB 
#
_exptl.entry_id    6QPB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              566.728 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 338 A CYS 338 1_555 A SG CYS 365 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 349 A CYS 349 1_555 A SG CYS 807 A CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 596 A CYS 596 1_555 A SG CYS 601 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 338 B CYS 338 1_555 B SG CYS 365 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 B SG CYS 349 B CYS 349 1_555 B SG CYS 807 B CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 B SG CYS 596 B CYS 596 1_555 B SG CYS 601 B CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C28 H57 N O8 P 1' 
_chem_comp.formula_weight    566.728 
_chem_comp.id                P1O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 P1O sing 235 n n 
O1 H1P P1O sing 236 n n 
O2 P1 P1O doub 237 n n 
P1 O3 P1O sing 238 n n 
P1 O4 P1O sing 239 n n 
O3 C1 P1O sing 240 n n 
C1 C2 P1O sing 241 n n 
C1 H1 P1O sing 242 n n 
C1 H2 P1O sing 243 n n 
C2 N1 P1O sing 244 n n 
C2 H3 P1O sing 245 n n 
C2 H4 P1O sing 246 n n 
N1 C3 P1O sing 247 n n 
N1 C4 P1O sing 248 n n 
N1 C5 P1O sing 249 n n 
C3 H5 P1O sing 250 n n 
C3 H6 P1O sing 251 n n 
C3 H7 P1O sing 252 n n 
C4 H8 P1O sing 253 n n 
C4 H9 P1O sing 254 n n 
C4 H10 P1O sing 255 n n 
C5 H11 P1O sing 256 n n 
C5 H12 P1O sing 257 n n 
C5 H13 P1O sing 258 n n 
O4 C6 P1O sing 259 n n 
C6 C7 P1O sing 260 n n 
C6 H14 P1O sing 261 n n 
C6 H15 P1O sing 262 n n 
C7 C8 P1O sing 263 n n 
C7 O7 P1O sing 264 n n 
C7 H16 P1O sing 265 n n 
C8 O5 P1O sing 266 n n 
C8 H17 P1O sing 267 n n 
C8 H18 P1O sing 268 n n 
O5 C9 P1O sing 269 n n 
C9 O6 P1O doub 270 n n 
C9 C10 P1O sing 271 n n 
C10 C11 P1O sing 272 n n 
C10 H19 P1O sing 273 n n 
C10 H20 P1O sing 274 n n 
C11 C12 P1O sing 275 n n 
C11 H21 P1O sing 276 n n 
C11 H22 P1O sing 277 n n 
C12 C13 P1O sing 278 n n 
C12 H23 P1O sing 279 n n 
C12 H24 P1O sing 280 n n 
C13 C14 P1O sing 281 n n 
C13 H25 P1O sing 282 n n 
C13 H26 P1O sing 283 n n 
C14 C15 P1O sing 284 n n 
C14 H27 P1O sing 285 n n 
C14 H28 P1O sing 286 n n 
C15 C16 P1O sing 287 n n 
C15 H29 P1O sing 288 n n 
C15 H30 P1O sing 289 n n 
C16 C17 P1O sing 290 n n 
C16 H31 P1O sing 291 n n 
C16 H32 P1O sing 292 n n 
C17 C18 P1O sing 293 n n 
C17 H33 P1O sing 294 n n 
C17 H34 P1O sing 295 n n 
C18 H35 P1O sing 296 n n 
C18 H36 P1O sing 297 n n 
C18 H37 P1O sing 298 n n 
O7 C19 P1O sing 299 n n 
C19 O8 P1O doub 300 n n 
C19 C20 P1O sing 301 n n 
C20 C21 P1O sing 302 n n 
C20 H38 P1O sing 303 n n 
C20 H39 P1O sing 304 n n 
C21 C22 P1O sing 305 n n 
C21 H40 P1O sing 306 n n 
C21 H41 P1O sing 307 n n 
C22 C23 P1O sing 308 n n 
C22 H42 P1O sing 309 n n 
C22 H43 P1O sing 310 n n 
C23 C24 P1O sing 311 n n 
C23 H44 P1O sing 312 n n 
C23 H45 P1O sing 313 n n 
C24 C25 P1O sing 314 n n 
C24 H46 P1O sing 315 n n 
C24 H47 P1O sing 316 n n 
C25 C26 P1O sing 317 n n 
C25 H48 P1O sing 318 n n 
C25 H49 P1O sing 319 n n 
C26 C27 P1O sing 320 n n 
C26 H50 P1O sing 321 n n 
C26 H51 P1O sing 322 n n 
C27 C28 P1O sing 323 n n 
C27 H52 P1O sing 324 n n 
C27 H53 P1O sing 325 n n 
C28 H54 P1O sing 326 n n 
C28 H55 P1O sing 327 n n 
C28 H56 P1O sing 328 n n 
#
_atom_sites.entry_id                     6QPB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 P1O A 1 1001 901 P1O 1 . 
D 2 P1O B 1 1001 901 P1O 1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P1O . . . D 2 108.275 122.734 135.635 1 49.88 ? O1 P1O 1001 B 1 
HETATM 2 O O2 P1O . . . D 2 107.571 120.651 137.02 1 49.88 ? O2 P1O 1001 B 1 
HETATM 3 P P1 P1O . . . D 2 108.583 121.661 136.614 1 49.88 ? P1 P1O 1001 B 1 
HETATM 4 O O3 P1O . . . D 2 108.91 122.551 138.117 1 49.88 ? O3 P1O 1001 B 1 
HETATM 5 C C1 P1O . . . D 2 108.318 123.755 138.293 1 49.88 ? C1 P1O 1001 B 1 
HETATM 6 C C2 P1O . . . D 2 106.802 123.548 138.591 1 49.88 ? C2 P1O 1001 B 1 
HETATM 7 N N1 P1O . . . D 2 106.441 123.987 140.016 1 49.88 ? N1 P1O 1001 B 1 
HETATM 8 C C3 P1O . . . D 2 106.709 125.468 140.18 1 49.88 ? C3 P1O 1001 B 1 
HETATM 9 C C4 P1O . . . D 2 107.279 123.213 141.009 1 49.88 ? C4 P1O 1001 B 1 
HETATM 10 C C5 P1O . . . D 2 104.984 123.716 140.305 1 49.88 ? C5 P1O 1001 B 1 
HETATM 11 O O4 P1O . . . D 2 110.139 121.079 136.285 1 49.88 ? O4 P1O 1001 B 1 
HETATM 12 C C6 P1O . . . D 2 111.281 121.87 136.299 1 49.88 ? C6 P1O 1001 B 1 
HETATM 13 C C7 P1O . . . D 2 112.371 121.36 135.312 1 49.88 ? C7 P1O 1001 B 1 
HETATM 14 C C8 P1O . . . D 2 112.532 122.288 134.033 1 49.88 ? C8 P1O 1001 B 1 
HETATM 15 O O5 P1O . . . D 2 111.352 122.291 133.187 1 49.88 ? O5 P1O 1001 B 1 
HETATM 16 C C9 P1O . . . D 2 111.46 123.027 132.006 1 49.88 ? C9 P1O 1001 B 1 
HETATM 17 O O6 P1O . . . D 2 112.03 124.08 132.022 1 49.88 ? O6 P1O 1001 B 1 
HETATM 18 C C10 P1O . . . D 2 110.849 122.44 130.692 1 49.88 ? C10 P1O 1001 B 1 
HETATM 19 C C11 P1O . . . D 2 111.568 122.942 129.389 1 49.88 ? C11 P1O 1001 B 1 
HETATM 20 C C12 P1O . . . D 2 110.82 122.666 128.047 1 49.88 ? C12 P1O 1001 B 1 
HETATM 21 C C13 P1O . . . D 2 111.609 122.948 126.727 1 49.88 ? C13 P1O 1001 B 1 
HETATM 22 C C14 P1O . . . D 2 110.735 123.213 125.455 1 49.88 ? C14 P1O 1001 B 1 
HETATM 23 C C15 P1O . . . D 2 111.269 122.635 124.102 1 49.88 ? C15 P1O 1001 B 1 
HETATM 24 C C16 P1O . . . D 2 110.331 122.806 122.864 1 49.88 ? C16 P1O 1001 B 1 
HETATM 25 C C17 P1O . . . D 2 110.84 122.206 121.524 1 49.88 ? C17 P1O 1001 B 1 
HETATM 26 C C18 P1O . . . D 2 111.937 121.128 121.646 1 49.88 ? C18 P1O 1001 B 1 
HETATM 27 O O7 P1O . . . D 2 112.035 120.028 134.837 1 49.88 ? O7 P1O 1001 B 1 
HETATM 28 C C19 P1O . . . D 2 113.063 119.08 134.76 1 49.88 ? C19 P1O 1001 B 1 
HETATM 29 O O8 P1O . . . D 2 113.899 119.034 135.612 1 49.88 ? O8 P1O 1001 B 1 
HETATM 30 C C20 P1O . . . D 2 113.079 118.096 133.526 1 49.88 ? C20 P1O 1001 B 1 
HETATM 31 C C21 P1O . . . D 2 113.954 118.578 132.321 1 49.88 ? C21 P1O 1001 B 1 
HETATM 32 C C22 P1O . . . D 2 113.584 118.02 130.903 1 49.88 ? C22 P1O 1001 B 1 
HETATM 33 C C23 P1O . . . D 2 113.773 119.014 129.714 1 49.88 ? C23 P1O 1001 B 1 
HETATM 34 C C24 P1O . . . D 2 113.541 118.454 128.273 1 49.88 ? C24 P1O 1001 B 1 
HETATM 35 C C25 P1O . . . D 2 113.601 119.499 127.109 1 49.88 ? C25 P1O 1001 B 1 
HETATM 36 C C26 P1O . . . D 2 114.151 119.015 125.731 1 49.88 ? C26 P1O 1001 B 1 
HETATM 37 C C27 P1O . . . D 2 115.43 119.748 125.247 1 49.88 ? C27 P1O 1001 B 1 
HETATM 38 C C28 P1O . . . D 2 115.933 119.34 123.855 1 49.88 ? C28 P1O 1001 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#