data_6QPC # _model_server_result.job_id JI6qu7hN4cQ3gERl_eYVCw _model_server_result.datetime_utc '2024-11-21 14:37:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qpc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1003}' # _entry.id 6QPC # _exptl.entry_id 6QPC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 566.728 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 331 A CYS 331 1_555 A SG CYS 372 A CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 338 A CYS 338 1_555 A SG CYS 365 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 349 A CYS 349 1_555 A SG CYS 807 A CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 352 A CYS 352 1_555 A SG CYS 356 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 596 A CYS 596 1_555 A SG CYS 601 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 B SG CYS 331 B CYS 331 1_555 B SG CYS 372 B CYS 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 338 B CYS 338 1_555 B SG CYS 365 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 B SG CYS 349 B CYS 349 1_555 B SG CYS 807 B CYS 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 B SG CYS 352 B CYS 352 1_555 B SG CYS 356 B CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 B SG CYS 596 B CYS 596 1_555 B SG CYS 601 B CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A OD1 ASN 621 A ASN 621 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc2 A OE2 GLU 624 A GLU 624 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc3 A OE1 GLU 667 A GLU 667 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc4 A OE1 GLU 670 A GLU 670 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc5 A OE2 GLU 670 A GLU 670 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc6 A OE2 GLU 670 A GLU 670 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc7 A OE1 GLU 699 A GLU 699 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc8 A OE2 GLU 699 A GLU 699 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc9 A OE2 GLU 699 A GLU 699 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc10 A OD1 ASP 703 A ASP 703 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc11 A OD2 ASP 703 A ASP 703 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? covale ? covale1 A OD1 ASP 811 A ASP 811 1_555 E C4 P1O . A P1O 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? metalc ? metalc12 B OD1 ASN 621 B ASN 621 1_555 F CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc13 B OE2 GLU 624 B GLU 624 1_555 G CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc14 B OE1 GLU 667 B GLU 667 1_555 G CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? metalc ? metalc15 B OE1 GLU 670 B GLU 670 1_555 F CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc16 B OE2 GLU 670 B GLU 670 1_555 F CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc17 B OE2 GLU 670 B GLU 670 1_555 G CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc18 B OE1 GLU 699 B GLU 699 1_555 F CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc19 B OE2 GLU 699 B GLU 699 1_555 F CA CA . B CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc20 B OE2 GLU 699 B GLU 699 1_555 G CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc21 B OD1 ASP 703 B ASP 703 1_555 G CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc22 B OD2 ASP 703 B ASP 703 1_555 G CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? covale ? covale2 B OD1 ASP 811 B ASP 811 1_555 H C4 P1O . B P1O 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? # _chem_comp.formula 'C28 H57 N O8 P 1' _chem_comp.formula_weight 566.728 _chem_comp.id P1O _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QPC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 1001 901 CA CA . D 2 CA A 1 1002 902 CA CA . E 3 P1O A 1 1003 1001 P1O 1 . F 2 CA B 1 1001 901 CA CA . G 2 CA B 1 1002 902 CA CA . H 3 P1O B 1 1003 1001 P1O 1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P1O . . . H 3 123.798 140.88 154.715 1 63.92 ? O1 P1O 1003 B 1 HETATM 2 O O2 P1O . . . H 3 124.307 139.393 156.802 1 63.92 ? O2 P1O 1003 B 1 HETATM 3 P P1 P1O . . . H 3 124.729 140.079 155.552 1 63.92 ? P1 P1O 1003 B 1 HETATM 4 O O3 P1O . . . H 3 125.914 141.261 156.129 1 63.92 ? O3 P1O 1003 B 1 HETATM 5 C C1 P1O . . . H 3 125.699 141.816 157.342 1 63.92 ? C1 P1O 1003 B 1 HETATM 6 C C2 P1O . . . H 3 124.511 142.868 157.255 1 63.92 ? C2 P1O 1003 B 1 HETATM 7 N N1 P1O . . . H 3 123.635 142.972 158.552 1 63.92 ? N1 P1O 1003 B 1 HETATM 8 C C3 P1O . . . H 3 123.35 144.422 158.842 1 63.92 ? C3 P1O 1003 B 1 HETATM 9 C C4 P1O . . . H 3 124.324 142.375 159.755 1 63.92 ? C4 P1O 1003 B 1 HETATM 10 C C5 P1O . . . H 3 122.316 142.255 158.359 1 63.92 ? C5 P1O 1003 B 1 HETATM 11 O O4 P1O . . . H 3 125.688 139.167 154.513 1 63.92 ? O4 P1O 1003 B 1 HETATM 12 C C6 P1O . . . H 3 126.279 139.663 153.369 1 63.92 ? C6 P1O 1003 B 1 HETATM 13 C C7 P1O . . . H 3 127.812 139.755 153.521 1 63.92 ? C7 P1O 1003 B 1 HETATM 14 C C8 P1O . . . H 3 128.344 141.041 152.863 1 63.92 ? C8 P1O 1003 B 1 HETATM 15 O O5 P1O . . . H 3 127.579 141.319 151.686 1 63.92 ? O5 P1O 1003 B 1 HETATM 16 C C9 P1O . . . H 3 128.116 140.863 150.497 1 63.92 ? C9 P1O 1003 B 1 HETATM 17 O O6 P1O . . . H 3 129.24 140.455 150.48 1 63.92 ? O6 P1O 1003 B 1 HETATM 18 C C10 P1O . . . H 3 127.237 140.907 149.222 1 63.92 ? C10 P1O 1003 B 1 HETATM 19 C C11 P1O . . . H 3 128.052 141.269 147.96 1 63.92 ? C11 P1O 1003 B 1 HETATM 20 C C12 P1O . . . H 3 127.828 140.354 146.746 1 63.92 ? C12 P1O 1003 B 1 HETATM 21 C C13 P1O . . . H 3 128.094 140.976 145.352 1 63.92 ? C13 P1O 1003 B 1 HETATM 22 C C14 P1O . . . H 3 127.355 140.284 144.172 1 63.92 ? C14 P1O 1003 B 1 HETATM 23 C C15 P1O . . . H 3 127.913 140.54 142.744 1 63.92 ? C15 P1O 1003 B 1 HETATM 24 C C16 P1O . . . H 3 126.944 140.205 141.577 1 63.92 ? C16 P1O 1003 B 1 HETATM 25 C C17 P1O . . . H 3 127.431 140.574 140.163 1 63.92 ? C17 P1O 1003 B 1 HETATM 26 C C18 P1O . . . H 3 128.499 139.631 139.58 1 63.92 ? C18 P1O 1003 B 1 HETATM 27 O O7 P1O . . . H 3 128.428 138.647 152.812 1 63.92 ? O7 P1O 1003 B 1 HETATM 28 C C19 P1O . . . H 3 129.662 138.16 153.268 1 63.92 ? C19 P1O 1003 B 1 HETATM 29 O O8 P1O . . . H 3 130.143 138.598 154.269 1 63.92 ? O8 P1O 1003 B 1 HETATM 30 C C20 P1O . . . H 3 130.373 137.025 152.424 1 63.92 ? C20 P1O 1003 B 1 HETATM 31 C C21 P1O . . . H 3 131.266 137.553 151.264 1 63.92 ? C21 P1O 1003 B 1 HETATM 32 C C22 P1O . . . H 3 131.308 136.705 149.95 1 63.92 ? C22 P1O 1003 B 1 HETATM 33 C C23 P1O . . . H 3 130.702 137.403 148.699 1 63.92 ? C23 P1O 1003 B 1 HETATM 34 C C24 P1O . . . H 3 131.173 136.919 147.301 1 63.92 ? C24 P1O 1003 B 1 HETATM 35 C C25 P1O . . . H 3 130.098 136.989 146.18 1 63.92 ? C25 P1O 1003 B 1 HETATM 36 C C26 P1O . . . H 3 130.572 137.261 144.722 1 63.92 ? C26 P1O 1003 B 1 HETATM 37 C C27 P1O . . . H 3 132.023 137.765 144.572 1 63.92 ? C27 P1O 1003 B 1 HETATM 38 C C28 P1O . . . H 3 132.378 138.312 143.177 1 63.92 ? C28 P1O 1003 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #