data_6QPD # _model_server_result.job_id VEGPPxnKu_7EuMkg85wxTw _model_server_result.datetime_utc '2024-10-19 10:15:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6QPD # _exptl.entry_id 6QPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6QPD _cell.length_a 53.272 _cell.length_b 53.272 _cell.length_c 113.051 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6QPD _atom_sites.fract_transf_matrix[1][1] 0.018772 _atom_sites.fract_transf_matrix[1][2] 0.010838 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 2 GOL GOL . E 4 HOH A 1 301 121 HOH HOH . E 4 HOH A 2 302 23 HOH HOH . E 4 HOH A 3 303 31 HOH HOH . E 4 HOH A 4 304 8 HOH HOH . E 4 HOH A 5 305 131 HOH HOH . E 4 HOH A 6 306 34 HOH HOH . E 4 HOH A 7 307 13 HOH HOH . E 4 HOH A 8 308 117 HOH HOH . E 4 HOH A 9 309 130 HOH HOH . E 4 HOH A 10 310 17 HOH HOH . E 4 HOH A 11 311 42 HOH HOH . E 4 HOH A 12 312 152 HOH HOH . E 4 HOH A 13 313 33 HOH HOH . E 4 HOH A 14 314 21 HOH HOH . E 4 HOH A 15 315 8 HOH HOH . E 4 HOH A 16 316 74 HOH HOH . E 4 HOH A 17 317 8 HOH HOH . E 4 HOH A 18 318 41 HOH HOH . E 4 HOH A 19 319 78 HOH HOH . E 4 HOH A 20 320 11 HOH HOH . E 4 HOH A 21 321 2 HOH HOH . E 4 HOH A 22 322 20 HOH HOH . E 4 HOH A 23 323 3 HOH HOH . E 4 HOH A 24 324 7 HOH HOH . E 4 HOH A 25 325 137 HOH HOH . E 4 HOH A 26 326 196 HOH HOH . E 4 HOH A 27 327 1 HOH HOH . E 4 HOH A 28 328 7 HOH HOH . E 4 HOH A 29 329 5 HOH HOH . E 4 HOH A 30 330 18 HOH HOH . E 4 HOH A 31 331 85 HOH HOH . E 4 HOH A 32 332 4 HOH HOH . E 4 HOH A 33 333 42 HOH HOH . E 4 HOH A 34 334 110 HOH HOH . E 4 HOH A 35 335 22 HOH HOH . E 4 HOH A 36 336 9 HOH HOH . E 4 HOH A 37 337 132 HOH HOH . E 4 HOH A 38 338 12 HOH HOH . E 4 HOH A 39 339 22 HOH HOH . E 4 HOH A 40 340 1 HOH HOH . E 4 HOH A 41 341 21 HOH HOH . E 4 HOH A 42 342 88 HOH HOH . E 4 HOH A 43 343 75 HOH HOH . E 4 HOH A 44 344 71 HOH HOH . E 4 HOH A 45 345 12 HOH HOH . E 4 HOH A 46 346 2 HOH HOH . E 4 HOH A 47 347 20 HOH HOH . E 4 HOH A 48 348 24 HOH HOH . E 4 HOH A 49 349 28 HOH HOH . E 4 HOH A 50 350 130 HOH HOH . E 4 HOH A 51 351 28 HOH HOH . E 4 HOH A 52 352 49 HOH HOH . E 4 HOH A 53 353 57 HOH HOH . E 4 HOH A 54 354 26 HOH HOH . E 4 HOH A 55 355 87 HOH HOH . E 4 HOH A 56 356 28 HOH HOH . E 4 HOH A 57 357 39 HOH HOH . E 4 HOH A 58 358 55 HOH HOH . E 4 HOH A 59 359 59 HOH HOH . E 4 HOH A 60 360 11 HOH HOH . E 4 HOH A 61 361 9 HOH HOH . E 4 HOH A 62 362 143 HOH HOH . E 4 HOH A 63 363 131 HOH HOH . E 4 HOH A 64 364 84 HOH HOH . E 4 HOH A 65 365 129 HOH HOH . E 4 HOH A 66 366 44 HOH HOH . E 4 HOH A 67 367 66 HOH HOH . E 4 HOH A 68 368 24 HOH HOH . E 4 HOH A 69 369 38 HOH HOH . E 4 HOH A 70 370 6 HOH HOH . E 4 HOH A 71 371 160 HOH HOH . E 4 HOH A 72 372 16 HOH HOH . E 4 HOH A 73 373 44 HOH HOH . E 4 HOH A 74 374 15 HOH HOH . E 4 HOH A 75 375 28 HOH HOH . E 4 HOH A 76 376 25 HOH HOH . E 4 HOH A 77 377 7 HOH HOH . E 4 HOH A 78 378 46 HOH HOH . E 4 HOH A 79 379 100 HOH HOH . E 4 HOH A 80 380 127 HOH HOH . E 4 HOH A 81 381 40 HOH HOH . E 4 HOH A 82 382 61 HOH HOH . E 4 HOH A 83 383 164 HOH HOH . E 4 HOH A 84 384 14 HOH HOH . E 4 HOH A 85 385 32 HOH HOH . E 4 HOH A 86 386 155 HOH HOH . E 4 HOH A 87 387 115 HOH HOH . E 4 HOH A 88 388 30 HOH HOH . E 4 HOH A 89 389 22 HOH HOH . E 4 HOH A 90 390 86 HOH HOH . E 4 HOH A 91 391 41 HOH HOH . E 4 HOH A 92 392 60 HOH HOH . E 4 HOH A 93 393 34 HOH HOH . E 4 HOH A 94 394 53 HOH HOH . E 4 HOH A 95 395 146 HOH HOH . E 4 HOH A 96 396 45 HOH HOH . E 4 HOH A 97 397 51 HOH HOH . E 4 HOH A 98 398 15 HOH HOH . E 4 HOH A 99 399 6 HOH HOH . E 4 HOH A 100 400 16 HOH HOH . E 4 HOH A 101 401 146 HOH HOH . E 4 HOH A 102 402 85 HOH HOH . E 4 HOH A 103 403 7 HOH HOH . E 4 HOH A 104 404 139 HOH HOH . E 4 HOH A 105 405 186 HOH HOH . E 4 HOH A 106 406 100 HOH HOH . E 4 HOH A 107 407 200 HOH HOH . E 4 HOH A 108 408 49 HOH HOH . E 4 HOH A 109 409 128 HOH HOH . E 4 HOH A 110 410 27 HOH HOH . E 4 HOH A 111 411 147 HOH HOH . E 4 HOH A 112 412 52 HOH HOH . E 4 HOH A 113 413 182 HOH HOH . E 4 HOH A 114 414 167 HOH HOH . E 4 HOH A 115 415 126 HOH HOH . E 4 HOH A 116 416 10 HOH HOH . E 4 HOH A 117 417 19 HOH HOH . E 4 HOH A 118 418 35 HOH HOH . E 4 HOH A 119 419 45 HOH HOH . E 4 HOH A 120 420 111 HOH HOH . E 4 HOH A 121 421 69 HOH HOH . E 4 HOH A 122 422 24 HOH HOH . E 4 HOH A 123 423 112 HOH HOH . E 4 HOH A 124 424 98 HOH HOH . E 4 HOH A 125 425 116 HOH HOH . E 4 HOH A 126 426 116 HOH HOH . E 4 HOH A 127 427 3 HOH HOH . E 4 HOH A 128 428 141 HOH HOH . E 4 HOH A 129 429 45 HOH HOH . E 4 HOH A 130 430 81 HOH HOH . E 4 HOH A 131 431 185 HOH HOH . E 4 HOH A 132 432 26 HOH HOH . E 4 HOH A 133 433 158 HOH HOH . E 4 HOH A 134 434 43 HOH HOH . E 4 HOH A 135 435 118 HOH HOH . E 4 HOH A 136 436 183 HOH HOH . E 4 HOH A 137 437 193 HOH HOH . E 4 HOH A 138 438 125 HOH HOH . E 4 HOH A 139 439 129 HOH HOH . E 4 HOH A 140 440 26 HOH HOH . E 4 HOH A 141 441 160 HOH HOH . E 4 HOH A 142 442 35 HOH HOH . E 4 HOH A 143 443 168 HOH HOH . E 4 HOH A 144 444 171 HOH HOH . E 4 HOH A 145 445 177 HOH HOH . E 4 HOH A 146 446 38 HOH HOH . E 4 HOH A 147 447 140 HOH HOH . E 4 HOH A 148 448 111 HOH HOH . E 4 HOH A 149 449 133 HOH HOH . E 4 HOH A 150 450 29 HOH HOH . E 4 HOH A 151 451 197 HOH HOH . E 4 HOH A 152 452 192 HOH HOH . E 4 HOH A 153 453 129 HOH HOH . E 4 HOH A 154 454 47 HOH HOH . E 4 HOH A 155 455 114 HOH HOH . E 4 HOH A 156 456 149 HOH HOH . E 4 HOH A 157 457 70 HOH HOH . E 4 HOH A 158 458 133 HOH HOH . E 4 HOH A 159 459 198 HOH HOH . E 4 HOH A 160 460 151 HOH HOH . E 4 HOH A 161 461 144 HOH HOH . E 4 HOH A 162 462 128 HOH HOH . E 4 HOH A 163 463 174 HOH HOH . E 4 HOH A 164 464 118 HOH HOH . E 4 HOH A 165 465 141 HOH HOH . E 4 HOH A 166 466 122 HOH HOH . E 4 HOH A 167 467 98 HOH HOH . E 4 HOH A 168 468 166 HOH HOH . E 4 HOH A 169 469 120 HOH HOH . E 4 HOH A 170 470 129 HOH HOH . E 4 HOH A 171 471 157 HOH HOH . E 4 HOH A 172 472 127 HOH HOH . E 4 HOH A 173 473 120 HOH HOH . E 4 HOH A 174 474 194 HOH HOH . E 4 HOH A 175 475 132 HOH HOH . E 4 HOH A 176 476 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -27.414 -17.48 -4.793 1 49.46 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 3 -26.363 -18.352 -5.258 1 50.13 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 3 -26.927 -16.03 -4.687 1 47.43 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 3 -26.344 -15.78 -3.396 1 46.74 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 3 -28.064 -15.032 -4.893 1 48.85 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 3 -27.595 -13.664 -4.893 1 47.54 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #