data_6QPL # _model_server_result.job_id Q400NhbJXMLjm2-f2MhmIw _model_server_result.datetime_utc '2024-11-16 03:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qpl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6QPL # _exptl.entry_id 6QPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QPL _cell.length_a 115.3 _cell.length_b 115.3 _cell.length_c 43.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 313 n n C1 H11 MPD sing 314 n n C1 H12 MPD sing 315 n n C1 H13 MPD sing 316 n n C2 O2 MPD sing 317 n n C2 CM MPD sing 318 n n C2 C3 MPD sing 319 n n O2 HO2 MPD sing 320 n n CM HM1 MPD sing 321 n n CM HM2 MPD sing 322 n n CM HM3 MPD sing 323 n n C3 C4 MPD sing 324 n n C3 H31 MPD sing 325 n n C3 H32 MPD sing 326 n n C4 O4 MPD sing 327 n n C4 C5 MPD sing 328 n n C4 H4 MPD sing 329 n n O4 HO4 MPD sing 330 n n C5 H51 MPD sing 331 n n C5 H52 MPD sing 332 n n C5 H53 MPD sing 333 n n # _atom_sites.entry_id 6QPL _atom_sites.fract_transf_matrix[1][1] 0.008673 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD B 1 301 2 MPD MPD . C 2 MPD B 1 302 3 MPD MPD . D 3 DMS B 1 303 1 DMS DMS . E 3 DMS B 1 304 2 DMS DMS . F 4 JC5 B 1 305 1 JC5 LIG . G 5 GLY B 1 306 2 GLY GLY . H 6 PO4 B 1 307 1 PO4 PO4 . I 7 GOL B 1 308 1 GOL GOL . J 8 HOH B 1 401 174 HOH HOH . J 8 HOH B 2 402 175 HOH HOH . J 8 HOH B 3 403 58 HOH HOH . J 8 HOH B 4 404 52 HOH HOH . J 8 HOH B 5 405 82 HOH HOH . J 8 HOH B 6 406 71 HOH HOH . J 8 HOH B 7 407 5 HOH HOH . J 8 HOH B 8 408 103 HOH HOH . J 8 HOH B 9 409 49 HOH HOH . J 8 HOH B 10 410 18 HOH HOH . J 8 HOH B 11 411 90 HOH HOH . J 8 HOH B 12 412 19 HOH HOH . J 8 HOH B 13 413 24 HOH HOH . J 8 HOH B 14 414 12 HOH HOH . J 8 HOH B 15 415 73 HOH HOH . J 8 HOH B 16 416 40 HOH HOH . J 8 HOH B 17 417 36 HOH HOH . J 8 HOH B 18 418 123 HOH HOH . J 8 HOH B 19 419 32 HOH HOH . J 8 HOH B 20 420 3 HOH HOH . J 8 HOH B 21 421 92 HOH HOH . J 8 HOH B 22 422 1 HOH HOH . J 8 HOH B 23 423 46 HOH HOH . J 8 HOH B 24 424 69 HOH HOH . J 8 HOH B 25 425 17 HOH HOH . J 8 HOH B 26 426 70 HOH HOH . J 8 HOH B 27 427 101 HOH HOH . J 8 HOH B 28 428 10 HOH HOH . J 8 HOH B 29 429 21 HOH HOH . J 8 HOH B 30 430 9 HOH HOH . J 8 HOH B 31 431 14 HOH HOH . J 8 HOH B 32 432 63 HOH HOH . J 8 HOH B 33 433 112 HOH HOH . J 8 HOH B 34 434 55 HOH HOH . J 8 HOH B 35 435 87 HOH HOH . J 8 HOH B 36 436 7 HOH HOH . J 8 HOH B 37 437 39 HOH HOH . J 8 HOH B 38 438 30 HOH HOH . J 8 HOH B 39 439 79 HOH HOH . J 8 HOH B 40 440 67 HOH HOH . J 8 HOH B 41 441 26 HOH HOH . J 8 HOH B 42 442 33 HOH HOH . J 8 HOH B 43 443 2 HOH HOH . J 8 HOH B 44 444 23 HOH HOH . J 8 HOH B 45 445 22 HOH HOH . J 8 HOH B 46 446 56 HOH HOH . J 8 HOH B 47 447 51 HOH HOH . J 8 HOH B 48 448 72 HOH HOH . J 8 HOH B 49 449 66 HOH HOH . J 8 HOH B 50 450 68 HOH HOH . J 8 HOH B 51 451 35 HOH HOH . J 8 HOH B 52 452 57 HOH HOH . J 8 HOH B 53 453 106 HOH HOH . J 8 HOH B 54 454 99 HOH HOH . J 8 HOH B 55 455 8 HOH HOH . J 8 HOH B 56 456 6 HOH HOH . J 8 HOH B 57 457 37 HOH HOH . J 8 HOH B 58 458 43 HOH HOH . J 8 HOH B 59 459 65 HOH HOH . J 8 HOH B 60 460 42 HOH HOH . J 8 HOH B 61 461 27 HOH HOH . J 8 HOH B 62 462 74 HOH HOH . J 8 HOH B 63 463 75 HOH HOH . J 8 HOH B 64 464 130 HOH HOH . J 8 HOH B 65 465 45 HOH HOH . J 8 HOH B 66 466 89 HOH HOH . J 8 HOH B 67 467 47 HOH HOH . J 8 HOH B 68 468 64 HOH HOH . J 8 HOH B 69 469 176 HOH HOH . J 8 HOH B 70 470 28 HOH HOH . J 8 HOH B 71 471 25 HOH HOH . J 8 HOH B 72 472 96 HOH HOH . J 8 HOH B 73 473 53 HOH HOH . J 8 HOH B 74 474 77 HOH HOH . J 8 HOH B 75 475 13 HOH HOH . J 8 HOH B 76 476 41 HOH HOH . J 8 HOH B 77 477 76 HOH HOH . J 8 HOH B 78 478 118 HOH HOH . J 8 HOH B 79 479 16 HOH HOH . J 8 HOH B 80 480 50 HOH HOH . J 8 HOH B 81 481 11 HOH HOH . J 8 HOH B 82 482 116 HOH HOH . J 8 HOH B 83 483 61 HOH HOH . J 8 HOH B 84 484 120 HOH HOH . J 8 HOH B 85 485 81 HOH HOH . J 8 HOH B 86 486 169 HOH HOH . J 8 HOH B 87 487 60 HOH HOH . J 8 HOH B 88 488 98 HOH HOH . J 8 HOH B 89 489 115 HOH HOH . J 8 HOH B 90 490 177 HOH HOH . J 8 HOH B 91 491 171 HOH HOH . J 8 HOH B 92 492 84 HOH HOH . J 8 HOH B 93 493 4 HOH HOH . J 8 HOH B 94 494 29 HOH HOH . J 8 HOH B 95 495 172 HOH HOH . J 8 HOH B 96 496 44 HOH HOH . J 8 HOH B 97 497 38 HOH HOH . J 8 HOH B 98 498 34 HOH HOH . J 8 HOH B 99 499 20 HOH HOH . J 8 HOH B 100 500 54 HOH HOH . J 8 HOH B 101 501 31 HOH HOH . J 8 HOH B 102 502 170 HOH HOH . J 8 HOH B 103 503 62 HOH HOH . J 8 HOH B 104 504 117 HOH HOH . J 8 HOH B 105 505 59 HOH HOH . J 8 HOH B 106 506 48 HOH HOH . J 8 HOH B 107 507 78 HOH HOH . J 8 HOH B 108 508 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 -10.872 -45.829 10.448 1 19.99 ? C1 MPD 302 B 1 HETATM 2 C C2 MPD . . . C 2 -9.584 -45.126 10.089 1 24.33 ? C2 MPD 302 B 1 HETATM 3 O O2 MPD . . . C 2 -9.574 -43.819 10.752 1 33.83 ? O2 MPD 302 B 1 HETATM 4 C CM MPD . . . C 2 -8.397 -45.903 10.671 1 21.88 ? CM MPD 302 B 1 HETATM 5 C C3 MPD . . . C 2 -9.382 -44.997 8.582 1 26.01 ? C3 MPD 302 B 1 HETATM 6 C C4 MPD . . . C 2 -10.314 -44.056 7.824 1 28.19 ? C4 MPD 302 B 1 HETATM 7 O O4 MPD . . . C 2 -9.909 -44.015 6.457 1 33.2 ? O4 MPD 302 B 1 HETATM 8 C C5 MPD . . . C 2 -11.784 -44.424 7.783 1 25.02 ? C5 MPD 302 B 1 HETATM 9 H H11 MPD . . . C 2 -11.402 -46.104 9.536 1 23.99 ? H11 MPD 302 B 1 HETATM 10 H H12 MPD . . . C 2 -10.648 -46.728 11.022 1 23.99 ? H12 MPD 302 B 1 HETATM 11 H H13 MPD . . . C 2 -11.496 -45.163 11.043 1 23.99 ? H13 MPD 302 B 1 HETATM 12 H HO2 MPD . . . C 2 -9.437 -43.115 10.085 1 40.6 ? HO2 MPD 302 B 1 HETATM 13 H HM1 MPD . . . C 2 -7.707 -46.168 9.87 1 26.26 ? HM1 MPD 302 B 1 HETATM 14 H HM2 MPD . . . C 2 -8.758 -46.811 11.155 1 26.26 ? HM2 MPD 302 B 1 HETATM 15 H HM3 MPD . . . C 2 -7.881 -45.282 11.404 1 26.26 ? HM3 MPD 302 B 1 HETATM 16 H H31 MPD . . . C 2 -8.357 -44.671 8.406 1 31.21 ? H31 MPD 302 B 1 HETATM 17 H H32 MPD . . . C 2 -9.474 -45.99 8.143 1 31.21 ? H32 MPD 302 B 1 HETATM 18 H H4 MPD . . . C 2 -10.222 -43.061 8.258 1 33.82 ? H4 MPD 302 B 1 HETATM 19 H HO4 MPD . . . C 2 -9.296 -43.263 6.32 1 39.84 ? HO4 MPD 302 B 1 HETATM 20 H H51 MPD . . . C 2 -12.099 -44.548 6.747 1 30.02 ? H51 MPD 302 B 1 HETATM 21 H H52 MPD . . . C 2 -11.94 -45.357 8.324 1 30.02 ? H52 MPD 302 B 1 HETATM 22 H H53 MPD . . . C 2 -12.37 -43.632 8.248 1 30.02 ? H53 MPD 302 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #