data_6QPP
#
_model_server_result.job_id            1eg2iV5X_BlLsv3UW_5bXw 
_model_server_result.datetime_utc      '2024-12-02 15:58:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qpp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    6QPP 
#
_exptl.entry_id    6QPP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.97 
_cell.angle_gamma         90 
_cell.entry_id            6QPP 
_cell.length_a            98.04 
_cell.length_b            61.02 
_cell.length_c            62.65 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QPP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 123 A CYS 123 1_555 A SG CYS 362 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
disulf ? disulf3 A SG CYS 329 A CYS 329 1_555 A SG CYS 338 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
covale ? covale1 A ND2 ASN 82 A ASN 82 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 246 n n 
C1 O1 NAG sing 247 n n 
C1 O5 NAG sing 248 n n 
C1 H1 NAG sing 249 n n 
C2 C3 NAG sing 250 n n 
C2 N2 NAG sing 251 n n 
C2 H2 NAG sing 252 n n 
C3 C4 NAG sing 253 n n 
C3 O3 NAG sing 254 n n 
C3 H3 NAG sing 255 n n 
C4 C5 NAG sing 256 n n 
C4 O4 NAG sing 257 n n 
C4 H4 NAG sing 258 n n 
C5 C6 NAG sing 259 n n 
C5 O5 NAG sing 260 n n 
C5 H5 NAG sing 261 n n 
C6 O6 NAG sing 262 n n 
C6 H61 NAG sing 263 n n 
C6 H62 NAG sing 264 n n 
C7 C8 NAG sing 265 n n 
C7 N2 NAG sing 266 n n 
C7 O7 NAG doub 267 n n 
C8 H81 NAG sing 268 n n 
C8 H82 NAG sing 269 n n 
C8 H83 NAG sing 270 n n 
N2 HN2 NAG sing 271 n n 
O1 HO1 NAG sing 272 n n 
O3 HO3 NAG sing 273 n n 
O4 HO4 NAG sing 274 n n 
O6 HO6 NAG sing 275 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6QPP 
_atom_sites.fract_transf_matrix[1][1]    0.0102 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004115 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016388 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 501 NAG NAG . 
C 3 EDO A 1 502 601 EDO EDO . 
D 4 HOH A 1 601 155 HOH HOH . 
D 4 HOH A 2 602 99 HOH HOH . 
D 4 HOH A 3 603 6 HOH HOH . 
D 4 HOH A 4 604 89 HOH HOH . 
D 4 HOH A 5 605 61 HOH HOH . 
D 4 HOH A 6 606 135 HOH HOH . 
D 4 HOH A 7 607 39 HOH HOH . 
D 4 HOH A 8 608 21 HOH HOH . 
D 4 HOH A 9 609 132 HOH HOH . 
D 4 HOH A 10 610 31 HOH HOH . 
D 4 HOH A 11 611 2 HOH HOH . 
D 4 HOH A 12 612 96 HOH HOH . 
D 4 HOH A 13 613 35 HOH HOH . 
D 4 HOH A 14 614 112 HOH HOH . 
D 4 HOH A 15 615 127 HOH HOH . 
D 4 HOH A 16 616 137 HOH HOH . 
D 4 HOH A 17 617 105 HOH HOH . 
D 4 HOH A 18 618 59 HOH HOH . 
D 4 HOH A 19 619 128 HOH HOH . 
D 4 HOH A 20 620 37 HOH HOH . 
D 4 HOH A 21 621 118 HOH HOH . 
D 4 HOH A 22 622 23 HOH HOH . 
D 4 HOH A 23 623 38 HOH HOH . 
D 4 HOH A 24 624 72 HOH HOH . 
D 4 HOH A 25 625 109 HOH HOH . 
D 4 HOH A 26 626 69 HOH HOH . 
D 4 HOH A 27 627 13 HOH HOH . 
D 4 HOH A 28 628 78 HOH HOH . 
D 4 HOH A 29 629 32 HOH HOH . 
D 4 HOH A 30 630 124 HOH HOH . 
D 4 HOH A 31 631 12 HOH HOH . 
D 4 HOH A 32 632 94 HOH HOH . 
D 4 HOH A 33 633 136 HOH HOH . 
D 4 HOH A 34 634 66 HOH HOH . 
D 4 HOH A 35 635 74 HOH HOH . 
D 4 HOH A 36 636 120 HOH HOH . 
D 4 HOH A 37 637 115 HOH HOH . 
D 4 HOH A 38 638 44 HOH HOH . 
D 4 HOH A 39 639 30 HOH HOH . 
D 4 HOH A 40 640 149 HOH HOH . 
D 4 HOH A 41 641 104 HOH HOH . 
D 4 HOH A 42 642 26 HOH HOH . 
D 4 HOH A 43 643 152 HOH HOH . 
D 4 HOH A 44 644 16 HOH HOH . 
D 4 HOH A 45 645 134 HOH HOH . 
D 4 HOH A 46 646 101 HOH HOH . 
D 4 HOH A 47 647 110 HOH HOH . 
D 4 HOH A 48 648 3 HOH HOH . 
D 4 HOH A 49 649 143 HOH HOH . 
D 4 HOH A 50 650 8 HOH HOH . 
D 4 HOH A 51 651 58 HOH HOH . 
D 4 HOH A 52 652 121 HOH HOH . 
D 4 HOH A 53 653 28 HOH HOH . 
D 4 HOH A 54 654 14 HOH HOH . 
D 4 HOH A 55 655 33 HOH HOH . 
D 4 HOH A 56 656 147 HOH HOH . 
D 4 HOH A 57 657 18 HOH HOH . 
D 4 HOH A 58 658 129 HOH HOH . 
D 4 HOH A 59 659 25 HOH HOH . 
D 4 HOH A 60 660 10 HOH HOH . 
D 4 HOH A 61 661 43 HOH HOH . 
D 4 HOH A 62 662 130 HOH HOH . 
D 4 HOH A 63 663 47 HOH HOH . 
D 4 HOH A 64 664 133 HOH HOH . 
D 4 HOH A 65 665 34 HOH HOH . 
D 4 HOH A 66 666 76 HOH HOH . 
D 4 HOH A 67 667 75 HOH HOH . 
D 4 HOH A 68 668 131 HOH HOH . 
D 4 HOH A 69 669 116 HOH HOH . 
D 4 HOH A 70 670 100 HOH HOH . 
D 4 HOH A 71 671 146 HOH HOH . 
D 4 HOH A 72 672 97 HOH HOH . 
D 4 HOH A 73 673 7 HOH HOH . 
D 4 HOH A 74 674 17 HOH HOH . 
D 4 HOH A 75 675 144 HOH HOH . 
D 4 HOH A 76 676 63 HOH HOH . 
D 4 HOH A 77 677 24 HOH HOH . 
D 4 HOH A 78 678 67 HOH HOH . 
D 4 HOH A 79 679 102 HOH HOH . 
D 4 HOH A 80 680 11 HOH HOH . 
D 4 HOH A 81 681 70 HOH HOH . 
D 4 HOH A 82 682 65 HOH HOH . 
D 4 HOH A 83 683 5 HOH HOH . 
D 4 HOH A 84 684 45 HOH HOH . 
D 4 HOH A 85 685 126 HOH HOH . 
D 4 HOH A 86 686 71 HOH HOH . 
D 4 HOH A 87 687 1 HOH HOH . 
D 4 HOH A 88 688 85 HOH HOH . 
D 4 HOH A 89 689 125 HOH HOH . 
D 4 HOH A 90 690 114 HOH HOH . 
D 4 HOH A 91 691 79 HOH HOH . 
D 4 HOH A 92 692 142 HOH HOH . 
D 4 HOH A 93 693 111 HOH HOH . 
D 4 HOH A 94 694 20 HOH HOH . 
D 4 HOH A 95 695 22 HOH HOH . 
D 4 HOH A 96 696 98 HOH HOH . 
D 4 HOH A 97 697 150 HOH HOH . 
D 4 HOH A 98 698 81 HOH HOH . 
D 4 HOH A 99 699 117 HOH HOH . 
D 4 HOH A 100 700 15 HOH HOH . 
D 4 HOH A 101 701 148 HOH HOH . 
D 4 HOH A 102 702 55 HOH HOH . 
D 4 HOH A 103 703 83 HOH HOH . 
D 4 HOH A 104 704 4 HOH HOH . 
D 4 HOH A 105 705 84 HOH HOH . 
D 4 HOH A 106 706 41 HOH HOH . 
D 4 HOH A 107 707 9 HOH HOH . 
D 4 HOH A 108 708 51 HOH HOH . 
D 4 HOH A 109 709 42 HOH HOH . 
D 4 HOH A 110 710 140 HOH HOH . 
D 4 HOH A 111 711 53 HOH HOH . 
D 4 HOH A 112 712 119 HOH HOH . 
D 4 HOH A 113 713 52 HOH HOH . 
D 4 HOH A 114 714 57 HOH HOH . 
D 4 HOH A 115 715 48 HOH HOH . 
D 4 HOH A 116 716 29 HOH HOH . 
D 4 HOH A 117 717 80 HOH HOH . 
D 4 HOH A 118 718 91 HOH HOH . 
D 4 HOH A 119 719 106 HOH HOH . 
D 4 HOH A 120 720 46 HOH HOH . 
D 4 HOH A 121 721 27 HOH HOH . 
D 4 HOH A 122 722 54 HOH HOH . 
D 4 HOH A 123 723 73 HOH HOH . 
D 4 HOH A 124 724 157 HOH HOH . 
D 4 HOH A 125 725 122 HOH HOH . 
D 4 HOH A 126 726 87 HOH HOH . 
D 4 HOH A 127 727 49 HOH HOH . 
D 4 HOH A 128 728 40 HOH HOH . 
D 4 HOH A 129 729 60 HOH HOH . 
D 4 HOH A 130 730 77 HOH HOH . 
D 4 HOH A 131 731 93 HOH HOH . 
D 4 HOH A 132 732 88 HOH HOH . 
D 4 HOH A 133 733 108 HOH HOH . 
D 4 HOH A 134 734 141 HOH HOH . 
D 4 HOH A 135 735 123 HOH HOH . 
D 4 HOH A 136 736 90 HOH HOH . 
D 4 HOH A 137 737 107 HOH HOH . 
D 4 HOH A 138 738 92 HOH HOH . 
D 4 HOH A 139 739 68 HOH HOH . 
D 4 HOH A 140 740 19 HOH HOH . 
D 4 HOH A 141 741 151 HOH HOH . 
D 4 HOH A 142 742 145 HOH HOH . 
D 4 HOH A 143 743 86 HOH HOH . 
D 4 HOH A 144 744 95 HOH HOH . 
D 4 HOH A 145 745 64 HOH HOH . 
D 4 HOH A 146 746 154 HOH HOH . 
D 4 HOH A 147 747 156 HOH HOH . 
D 4 HOH A 148 748 138 HOH HOH . 
D 4 HOH A 149 749 113 HOH HOH . 
D 4 HOH A 150 750 158 HOH HOH . 
D 4 HOH A 151 751 139 HOH HOH . 
D 4 HOH A 152 752 36 HOH HOH . 
D 4 HOH A 153 753 50 HOH HOH . 
D 4 HOH A 154 754 62 HOH HOH . 
D 4 HOH A 155 755 103 HOH HOH . 
D 4 HOH A 156 756 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 9.133 69.561 -11.753 1 25.42 ? C1 NAG 501 A 1 
HETATM 2 C C2 NAG . . . B 2 8.69 69.021 -13.124 1 30 ? C2 NAG 501 A 1 
HETATM 3 C C3 NAG . . . B 2 8.455 70.169 -14.087 1 34.7 ? C3 NAG 501 A 1 
HETATM 4 C C4 NAG . . . B 2 7.613 71.34 -13.514 1 38.96 ? C4 NAG 501 A 1 
HETATM 5 C C5 NAG . . . B 2 8.123 71.698 -12.104 1 36.31 ? C5 NAG 501 A 1 
HETATM 6 C C6 NAG . . . B 2 7.343 72.767 -11.344 1 38.81 ? C6 NAG 501 A 1 
HETATM 7 C C7 NAG . . . B 2 9.531 66.667 -13.499 1 37.71 ? C7 NAG 501 A 1 
HETATM 8 C C8 NAG . . . B 2 10.677 65.912 -14.127 1 38.21 ? C8 NAG 501 A 1 
HETATM 9 N N2 NAG . . . B 2 9.623 68.025 -13.668 1 28.91 ? N2 NAG 501 A 1 
HETATM 10 O O3 NAG . . . B 2 7.808 69.477 -15.166 1 41.17 ? O3 NAG 501 A 1 
HETATM 11 O O4 NAG . . . B 2 7.664 72.503 -14.365 1 48.74 ? O4 NAG 501 A 1 
HETATM 12 O O5 NAG . . . B 2 8.226 70.541 -11.243 1 29.58 ? O5 NAG 501 A 1 
HETATM 13 O O6 NAG . . . B 2 6.11 72.324 -10.785 1 41.2 ? O6 NAG 501 A 1 
HETATM 14 O O7 NAG . . . B 2 8.66 66.042 -12.861 1 41.49 ? O7 NAG 501 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           14 
#