data_6QPP # _model_server_result.job_id r6uQC7N1JJzw4Qo_pWxpAg _model_server_result.datetime_utc '2024-12-02 15:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qpp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 6QPP # _exptl.entry_id 6QPP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.97 _cell.angle_gamma 90 _cell.entry_id 6QPP _cell.length_a 98.04 _cell.length_b 61.02 _cell.length_c 62.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QPP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 123 1_555 A SG CYS 362 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 134 A CYS 134 1_555 A SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? disulf ? disulf3 A SG CYS 329 A CYS 329 1_555 A SG CYS 338 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? covale ? covale1 A ND2 ASN 82 A ASN 82 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6QPP _atom_sites.fract_transf_matrix[1][1] 0.0102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 501 NAG NAG . C 3 EDO A 1 502 601 EDO EDO . D 4 HOH A 1 601 155 HOH HOH . D 4 HOH A 2 602 99 HOH HOH . D 4 HOH A 3 603 6 HOH HOH . D 4 HOH A 4 604 89 HOH HOH . D 4 HOH A 5 605 61 HOH HOH . D 4 HOH A 6 606 135 HOH HOH . D 4 HOH A 7 607 39 HOH HOH . D 4 HOH A 8 608 21 HOH HOH . D 4 HOH A 9 609 132 HOH HOH . D 4 HOH A 10 610 31 HOH HOH . D 4 HOH A 11 611 2 HOH HOH . D 4 HOH A 12 612 96 HOH HOH . D 4 HOH A 13 613 35 HOH HOH . D 4 HOH A 14 614 112 HOH HOH . D 4 HOH A 15 615 127 HOH HOH . D 4 HOH A 16 616 137 HOH HOH . D 4 HOH A 17 617 105 HOH HOH . D 4 HOH A 18 618 59 HOH HOH . D 4 HOH A 19 619 128 HOH HOH . D 4 HOH A 20 620 37 HOH HOH . D 4 HOH A 21 621 118 HOH HOH . D 4 HOH A 22 622 23 HOH HOH . D 4 HOH A 23 623 38 HOH HOH . D 4 HOH A 24 624 72 HOH HOH . D 4 HOH A 25 625 109 HOH HOH . D 4 HOH A 26 626 69 HOH HOH . D 4 HOH A 27 627 13 HOH HOH . D 4 HOH A 28 628 78 HOH HOH . D 4 HOH A 29 629 32 HOH HOH . D 4 HOH A 30 630 124 HOH HOH . D 4 HOH A 31 631 12 HOH HOH . D 4 HOH A 32 632 94 HOH HOH . D 4 HOH A 33 633 136 HOH HOH . D 4 HOH A 34 634 66 HOH HOH . D 4 HOH A 35 635 74 HOH HOH . D 4 HOH A 36 636 120 HOH HOH . D 4 HOH A 37 637 115 HOH HOH . D 4 HOH A 38 638 44 HOH HOH . D 4 HOH A 39 639 30 HOH HOH . D 4 HOH A 40 640 149 HOH HOH . D 4 HOH A 41 641 104 HOH HOH . D 4 HOH A 42 642 26 HOH HOH . D 4 HOH A 43 643 152 HOH HOH . D 4 HOH A 44 644 16 HOH HOH . D 4 HOH A 45 645 134 HOH HOH . D 4 HOH A 46 646 101 HOH HOH . D 4 HOH A 47 647 110 HOH HOH . D 4 HOH A 48 648 3 HOH HOH . D 4 HOH A 49 649 143 HOH HOH . D 4 HOH A 50 650 8 HOH HOH . D 4 HOH A 51 651 58 HOH HOH . D 4 HOH A 52 652 121 HOH HOH . D 4 HOH A 53 653 28 HOH HOH . D 4 HOH A 54 654 14 HOH HOH . D 4 HOH A 55 655 33 HOH HOH . D 4 HOH A 56 656 147 HOH HOH . D 4 HOH A 57 657 18 HOH HOH . D 4 HOH A 58 658 129 HOH HOH . D 4 HOH A 59 659 25 HOH HOH . D 4 HOH A 60 660 10 HOH HOH . D 4 HOH A 61 661 43 HOH HOH . D 4 HOH A 62 662 130 HOH HOH . D 4 HOH A 63 663 47 HOH HOH . D 4 HOH A 64 664 133 HOH HOH . D 4 HOH A 65 665 34 HOH HOH . D 4 HOH A 66 666 76 HOH HOH . D 4 HOH A 67 667 75 HOH HOH . D 4 HOH A 68 668 131 HOH HOH . D 4 HOH A 69 669 116 HOH HOH . D 4 HOH A 70 670 100 HOH HOH . D 4 HOH A 71 671 146 HOH HOH . D 4 HOH A 72 672 97 HOH HOH . D 4 HOH A 73 673 7 HOH HOH . D 4 HOH A 74 674 17 HOH HOH . D 4 HOH A 75 675 144 HOH HOH . D 4 HOH A 76 676 63 HOH HOH . D 4 HOH A 77 677 24 HOH HOH . D 4 HOH A 78 678 67 HOH HOH . D 4 HOH A 79 679 102 HOH HOH . D 4 HOH A 80 680 11 HOH HOH . D 4 HOH A 81 681 70 HOH HOH . D 4 HOH A 82 682 65 HOH HOH . D 4 HOH A 83 683 5 HOH HOH . D 4 HOH A 84 684 45 HOH HOH . D 4 HOH A 85 685 126 HOH HOH . D 4 HOH A 86 686 71 HOH HOH . D 4 HOH A 87 687 1 HOH HOH . D 4 HOH A 88 688 85 HOH HOH . D 4 HOH A 89 689 125 HOH HOH . D 4 HOH A 90 690 114 HOH HOH . D 4 HOH A 91 691 79 HOH HOH . D 4 HOH A 92 692 142 HOH HOH . D 4 HOH A 93 693 111 HOH HOH . D 4 HOH A 94 694 20 HOH HOH . D 4 HOH A 95 695 22 HOH HOH . D 4 HOH A 96 696 98 HOH HOH . D 4 HOH A 97 697 150 HOH HOH . D 4 HOH A 98 698 81 HOH HOH . D 4 HOH A 99 699 117 HOH HOH . D 4 HOH A 100 700 15 HOH HOH . D 4 HOH A 101 701 148 HOH HOH . D 4 HOH A 102 702 55 HOH HOH . D 4 HOH A 103 703 83 HOH HOH . D 4 HOH A 104 704 4 HOH HOH . D 4 HOH A 105 705 84 HOH HOH . D 4 HOH A 106 706 41 HOH HOH . D 4 HOH A 107 707 9 HOH HOH . D 4 HOH A 108 708 51 HOH HOH . D 4 HOH A 109 709 42 HOH HOH . D 4 HOH A 110 710 140 HOH HOH . D 4 HOH A 111 711 53 HOH HOH . D 4 HOH A 112 712 119 HOH HOH . D 4 HOH A 113 713 52 HOH HOH . D 4 HOH A 114 714 57 HOH HOH . D 4 HOH A 115 715 48 HOH HOH . D 4 HOH A 116 716 29 HOH HOH . D 4 HOH A 117 717 80 HOH HOH . D 4 HOH A 118 718 91 HOH HOH . D 4 HOH A 119 719 106 HOH HOH . D 4 HOH A 120 720 46 HOH HOH . D 4 HOH A 121 721 27 HOH HOH . D 4 HOH A 122 722 54 HOH HOH . D 4 HOH A 123 723 73 HOH HOH . D 4 HOH A 124 724 157 HOH HOH . D 4 HOH A 125 725 122 HOH HOH . D 4 HOH A 126 726 87 HOH HOH . D 4 HOH A 127 727 49 HOH HOH . D 4 HOH A 128 728 40 HOH HOH . D 4 HOH A 129 729 60 HOH HOH . D 4 HOH A 130 730 77 HOH HOH . D 4 HOH A 131 731 93 HOH HOH . D 4 HOH A 132 732 88 HOH HOH . D 4 HOH A 133 733 108 HOH HOH . D 4 HOH A 134 734 141 HOH HOH . D 4 HOH A 135 735 123 HOH HOH . D 4 HOH A 136 736 90 HOH HOH . D 4 HOH A 137 737 107 HOH HOH . D 4 HOH A 138 738 92 HOH HOH . D 4 HOH A 139 739 68 HOH HOH . D 4 HOH A 140 740 19 HOH HOH . D 4 HOH A 141 741 151 HOH HOH . D 4 HOH A 142 742 145 HOH HOH . D 4 HOH A 143 743 86 HOH HOH . D 4 HOH A 144 744 95 HOH HOH . D 4 HOH A 145 745 64 HOH HOH . D 4 HOH A 146 746 154 HOH HOH . D 4 HOH A 147 747 156 HOH HOH . D 4 HOH A 148 748 138 HOH HOH . D 4 HOH A 149 749 113 HOH HOH . D 4 HOH A 150 750 158 HOH HOH . D 4 HOH A 151 751 139 HOH HOH . D 4 HOH A 152 752 36 HOH HOH . D 4 HOH A 153 753 50 HOH HOH . D 4 HOH A 154 754 62 HOH HOH . D 4 HOH A 155 755 103 HOH HOH . D 4 HOH A 156 756 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 29.208 62.352 25.656 1 18.3 ? C1 EDO 502 A 1 HETATM 2 O O1 EDO . . . C 3 29.181 61.504 26.821 1 20.33 ? O1 EDO 502 A 1 HETATM 3 C C2 EDO . . . C 3 30.241 63.47 25.769 1 17.09 ? C2 EDO 502 A 1 HETATM 4 O O2 EDO . . . C 3 30.001 64.271 26.915 1 18.84 ? O2 EDO 502 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 518 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #