data_6QQ2 # _model_server_result.job_id U_BeUi6NDxnijKicmTuEqQ _model_server_result.datetime_utc '2024-11-05 16:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6QQ2 # _exptl.entry_id 6QQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRITE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QQ2 _cell.length_a 180.975 _cell.length_b 180.975 _cell.length_c 180.975 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 94 A HIS 94 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A NE2 HIS 99 A HIS 99 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 A NE2 HIS 134 A HIS 134 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc4 A SG CYS 135 A CYS 135 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 A ND1 HIS 143 A HIS 143 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc6 A SD MET 148 A MET 148 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? covale ? covale1 A SG CYS 364 A CYS 364 1_555 E CAB HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? covale ? covale2 A SG CYS 367 A CYS 367 1_555 E CAC HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc7 A NE2 HIS 368 A HIS 368 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 A SD MET 418 A MET 418 1_555 E FE HEC . A HEC 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc9 C CU CU . A CU 502 1_555 D O1 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc10 C CU CU . A CU 502 1_555 D N NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc11 C CU CU . A CU 502 1_555 D O2 NO2 . A NO2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc12 A NE2 HIS 289 A HIS 289 1_555 C CU CU . A CU 502 9_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? # _chem_comp.formula 'N O2 -1' _chem_comp.formula_weight 46.005 _chem_comp.id NO2 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRITE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QQ2 _atom_sites.fract_transf_matrix[1][1] 0.005526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 2 CU A 1 502 502 CU CU . D 3 NO2 A 1 503 503 NO2 NO2 . E 4 HEC A 1 504 600 HEC HEM . F 5 HOH A 1 601 55 HOH HOH . F 5 HOH A 2 602 141 HOH HOH . F 5 HOH A 3 603 24 HOH HOH . F 5 HOH A 4 604 109 HOH HOH . F 5 HOH A 5 605 152 HOH HOH . F 5 HOH A 6 606 192 HOH HOH . F 5 HOH A 7 607 95 HOH HOH . F 5 HOH A 8 608 169 HOH HOH . F 5 HOH A 9 609 57 HOH HOH . F 5 HOH A 10 610 77 HOH HOH . F 5 HOH A 11 611 113 HOH HOH . F 5 HOH A 12 612 186 HOH HOH . F 5 HOH A 13 613 190 HOH HOH . F 5 HOH A 14 614 144 HOH HOH . F 5 HOH A 15 615 140 HOH HOH . F 5 HOH A 16 616 106 HOH HOH . F 5 HOH A 17 617 201 HOH HOH . F 5 HOH A 18 618 15 HOH HOH . F 5 HOH A 19 619 143 HOH HOH . F 5 HOH A 20 620 6 HOH HOH . F 5 HOH A 21 621 137 HOH HOH . F 5 HOH A 22 622 145 HOH HOH . F 5 HOH A 23 623 191 HOH HOH . F 5 HOH A 24 624 96 HOH HOH . F 5 HOH A 25 625 131 HOH HOH . F 5 HOH A 26 626 67 HOH HOH . F 5 HOH A 27 627 193 HOH HOH . F 5 HOH A 28 628 207 HOH HOH . F 5 HOH A 29 629 182 HOH HOH . F 5 HOH A 30 630 99 HOH HOH . F 5 HOH A 31 631 70 HOH HOH . F 5 HOH A 32 632 90 HOH HOH . F 5 HOH A 33 633 92 HOH HOH . F 5 HOH A 34 634 199 HOH HOH . F 5 HOH A 35 635 12 HOH HOH . F 5 HOH A 36 636 117 HOH HOH . F 5 HOH A 37 637 123 HOH HOH . F 5 HOH A 38 638 58 HOH HOH . F 5 HOH A 39 639 174 HOH HOH . F 5 HOH A 40 640 147 HOH HOH . F 5 HOH A 41 641 160 HOH HOH . F 5 HOH A 42 642 188 HOH HOH . F 5 HOH A 43 643 31 HOH HOH . F 5 HOH A 44 644 136 HOH HOH . F 5 HOH A 45 645 118 HOH HOH . F 5 HOH A 46 646 104 HOH HOH . F 5 HOH A 47 647 153 HOH HOH . F 5 HOH A 48 648 225 HOH HOH . F 5 HOH A 49 649 230 HOH HOH . F 5 HOH A 50 650 43 HOH HOH . F 5 HOH A 51 651 30 HOH HOH . F 5 HOH A 52 652 185 HOH HOH . F 5 HOH A 53 653 197 HOH HOH . F 5 HOH A 54 654 56 HOH HOH . F 5 HOH A 55 655 170 HOH HOH . F 5 HOH A 56 656 115 HOH HOH . F 5 HOH A 57 657 179 HOH HOH . F 5 HOH A 58 658 163 HOH HOH . F 5 HOH A 59 659 19 HOH HOH . F 5 HOH A 60 660 194 HOH HOH . F 5 HOH A 61 661 202 HOH HOH . F 5 HOH A 62 662 203 HOH HOH . F 5 HOH A 63 663 224 HOH HOH . F 5 HOH A 64 664 34 HOH HOH . F 5 HOH A 65 665 110 HOH HOH . F 5 HOH A 66 666 16 HOH HOH . F 5 HOH A 67 667 13 HOH HOH . F 5 HOH A 68 668 196 HOH HOH . F 5 HOH A 69 669 88 HOH HOH . F 5 HOH A 70 670 125 HOH HOH . F 5 HOH A 71 671 206 HOH HOH . F 5 HOH A 72 672 173 HOH HOH . F 5 HOH A 73 673 216 HOH HOH . F 5 HOH A 74 674 184 HOH HOH . F 5 HOH A 75 675 132 HOH HOH . F 5 HOH A 76 676 177 HOH HOH . F 5 HOH A 77 677 195 HOH HOH . F 5 HOH A 78 678 83 HOH HOH . F 5 HOH A 79 679 87 HOH HOH . F 5 HOH A 80 680 97 HOH HOH . F 5 HOH A 81 681 218 HOH HOH . F 5 HOH A 82 682 204 HOH HOH . F 5 HOH A 83 683 45 HOH HOH . F 5 HOH A 84 684 69 HOH HOH . F 5 HOH A 85 685 68 HOH HOH . F 5 HOH A 86 686 78 HOH HOH . F 5 HOH A 87 687 175 HOH HOH . F 5 HOH A 88 688 187 HOH HOH . F 5 HOH A 89 689 74 HOH HOH . F 5 HOH A 90 690 142 HOH HOH . F 5 HOH A 91 691 23 HOH HOH . F 5 HOH A 92 692 89 HOH HOH . F 5 HOH A 93 693 178 HOH HOH . F 5 HOH A 94 694 200 HOH HOH . F 5 HOH A 95 695 27 HOH HOH . F 5 HOH A 96 696 18 HOH HOH . F 5 HOH A 97 697 76 HOH HOH . F 5 HOH A 98 698 134 HOH HOH . F 5 HOH A 99 699 205 HOH HOH . F 5 HOH A 100 700 146 HOH HOH . F 5 HOH A 101 701 121 HOH HOH . F 5 HOH A 102 702 49 HOH HOH . F 5 HOH A 103 703 64 HOH HOH . F 5 HOH A 104 704 176 HOH HOH . F 5 HOH A 105 705 81 HOH HOH . F 5 HOH A 106 706 167 HOH HOH . F 5 HOH A 107 707 135 HOH HOH . F 5 HOH A 108 708 11 HOH HOH . F 5 HOH A 109 709 127 HOH HOH . F 5 HOH A 110 710 166 HOH HOH . F 5 HOH A 111 711 181 HOH HOH . F 5 HOH A 112 712 198 HOH HOH . F 5 HOH A 113 713 59 HOH HOH . F 5 HOH A 114 714 155 HOH HOH . F 5 HOH A 115 715 112 HOH HOH . F 5 HOH A 116 716 231 HOH HOH . F 5 HOH A 117 717 48 HOH HOH . F 5 HOH A 118 718 86 HOH HOH . F 5 HOH A 119 719 93 HOH HOH . F 5 HOH A 120 720 79 HOH HOH . F 5 HOH A 121 721 65 HOH HOH . F 5 HOH A 122 722 82 HOH HOH . F 5 HOH A 123 723 5 HOH HOH . F 5 HOH A 124 724 71 HOH HOH . F 5 HOH A 125 725 158 HOH HOH . F 5 HOH A 126 726 139 HOH HOH . F 5 HOH A 127 727 73 HOH HOH . F 5 HOH A 128 728 156 HOH HOH . F 5 HOH A 129 729 164 HOH HOH . F 5 HOH A 130 730 9 HOH HOH . F 5 HOH A 131 731 180 HOH HOH . F 5 HOH A 132 732 61 HOH HOH . F 5 HOH A 133 733 227 HOH HOH . F 5 HOH A 134 734 14 HOH HOH . F 5 HOH A 135 735 33 HOH HOH . F 5 HOH A 136 736 42 HOH HOH . F 5 HOH A 137 737 29 HOH HOH . F 5 HOH A 138 738 51 HOH HOH . F 5 HOH A 139 739 21 HOH HOH . F 5 HOH A 140 740 228 HOH HOH . F 5 HOH A 141 741 189 HOH HOH . F 5 HOH A 142 742 101 HOH HOH . F 5 HOH A 143 743 157 HOH HOH . F 5 HOH A 144 744 102 HOH HOH . F 5 HOH A 145 745 39 HOH HOH . F 5 HOH A 146 746 165 HOH HOH . F 5 HOH A 147 747 91 HOH HOH . F 5 HOH A 148 748 94 HOH HOH . F 5 HOH A 149 749 100 HOH HOH . F 5 HOH A 150 750 226 HOH HOH . F 5 HOH A 151 751 66 HOH HOH . F 5 HOH A 152 752 138 HOH HOH . F 5 HOH A 153 753 85 HOH HOH . F 5 HOH A 154 754 161 HOH HOH . F 5 HOH A 155 755 129 HOH HOH . F 5 HOH A 156 756 62 HOH HOH . F 5 HOH A 157 757 159 HOH HOH . F 5 HOH A 158 758 4 HOH HOH . F 5 HOH A 159 759 41 HOH HOH . F 5 HOH A 160 760 108 HOH HOH . F 5 HOH A 161 761 37 HOH HOH . F 5 HOH A 162 762 75 HOH HOH . F 5 HOH A 163 763 8 HOH HOH . F 5 HOH A 164 764 40 HOH HOH . F 5 HOH A 165 765 2 HOH HOH . F 5 HOH A 166 766 72 HOH HOH . F 5 HOH A 167 767 183 HOH HOH . F 5 HOH A 168 768 119 HOH HOH . F 5 HOH A 169 769 46 HOH HOH . F 5 HOH A 170 770 168 HOH HOH . F 5 HOH A 171 771 84 HOH HOH . F 5 HOH A 172 772 124 HOH HOH . F 5 HOH A 173 773 162 HOH HOH . F 5 HOH A 174 774 212 HOH HOH . F 5 HOH A 175 775 52 HOH HOH . F 5 HOH A 176 776 214 HOH HOH . F 5 HOH A 177 777 221 HOH HOH . F 5 HOH A 178 778 50 HOH HOH . F 5 HOH A 179 779 105 HOH HOH . F 5 HOH A 180 780 103 HOH HOH . F 5 HOH A 181 781 98 HOH HOH . F 5 HOH A 182 782 128 HOH HOH . F 5 HOH A 183 783 122 HOH HOH . F 5 HOH A 184 784 215 HOH HOH . F 5 HOH A 185 785 47 HOH HOH . F 5 HOH A 186 786 20 HOH HOH . F 5 HOH A 187 787 114 HOH HOH . F 5 HOH A 188 788 222 HOH HOH . F 5 HOH A 189 789 26 HOH HOH . F 5 HOH A 190 790 35 HOH HOH . F 5 HOH A 191 791 172 HOH HOH . F 5 HOH A 192 792 3 HOH HOH . F 5 HOH A 193 793 151 HOH HOH . F 5 HOH A 194 794 150 HOH HOH . F 5 HOH A 195 795 44 HOH HOH . F 5 HOH A 196 796 63 HOH HOH . F 5 HOH A 197 797 149 HOH HOH . F 5 HOH A 198 798 148 HOH HOH . F 5 HOH A 199 799 211 HOH HOH . F 5 HOH A 200 800 1 HOH HOH . F 5 HOH A 201 801 53 HOH HOH . F 5 HOH A 202 802 220 HOH HOH . F 5 HOH A 203 803 130 HOH HOH . F 5 HOH A 204 804 32 HOH HOH . F 5 HOH A 205 805 171 HOH HOH . F 5 HOH A 206 806 28 HOH HOH . F 5 HOH A 207 807 120 HOH HOH . F 5 HOH A 208 808 154 HOH HOH . F 5 HOH A 209 809 223 HOH HOH . F 5 HOH A 210 810 219 HOH HOH . F 5 HOH A 211 811 38 HOH HOH . F 5 HOH A 212 812 229 HOH HOH . F 5 HOH A 213 813 10 HOH HOH . F 5 HOH A 214 814 60 HOH HOH . F 5 HOH A 215 815 107 HOH HOH . F 5 HOH A 216 816 80 HOH HOH . F 5 HOH A 217 817 133 HOH HOH . F 5 HOH A 218 818 116 HOH HOH . F 5 HOH A 219 819 111 HOH HOH . F 5 HOH A 220 820 213 HOH HOH . F 5 HOH A 221 821 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO2 . . . D 3 32.381 6.914 17.749 1 59.11 ? N NO2 503 A 1 HETATM 2 O O1 NO2 . . . D 3 31.22 6.763 17.224 1 49.12 ? O1 NO2 503 A 1 HETATM 3 O O2 NO2 . . . D 3 32.975 7.487 18.749 1 51.14 ? O2 NO2 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 3 #