data_6QQ3 # _model_server_result.job_id OHX74gnMqKPIra-QFdxSgA _model_server_result.datetime_utc '2024-12-23 09:58:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6QQ3 # _exptl.entry_id 6QQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QQ3 _cell.length_a 79.448 _cell.length_b 79.448 _cell.length_c 37.882 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 B CYS 6 1_555 A SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf2 A SG CYS 30 B CYS 30 1_555 A SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 64 B CYS 64 1_555 A SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 76 B CYS 76 1_555 A SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc1 A OG SER 24 B SER 24 1_555 E NA NA . B NA 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc2 A OG SER 24 B SER 24 1_555 E NA NA . B NA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A OD1 ASN 44 B ASN 44 1_555 G NA NA . B NA 206 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc4 A O SER 60 B SER 60 1_555 B NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 A O CYS 64 B CYS 64 1_555 B NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 A OG SER 72 B SER 72 1_555 B NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc7 A O ARG 73 B ARG 73 1_555 B NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc8 B NA NA . B NA 201 1_555 I O HOH . B HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc9 B NA NA . B NA 201 1_555 I O HOH . B HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc10 E NA NA . B NA 204 1_555 I O HOH . B HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc11 E NA NA . B NA 204 1_555 I O HOH . B HOH 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc12 F NA NA . B NA 205 1_555 I O HOH . B HOH 335 7_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QQ3 _atom_sites.fract_transf_matrix[1][1] 0.012587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA B 1 201 201 NA NA . C 3 ACT B 1 202 1 ACT ACT . D 4 CL B 1 203 1 CL CL . E 2 NA B 1 204 1 NA NA . F 2 NA B 1 205 2 NA NA . G 2 NA B 1 206 3 NA NA . H 2 NA B 1 207 4 NA NA . I 5 HOH B 1 301 55 HOH HOH . I 5 HOH B 2 302 68 HOH HOH . I 5 HOH B 3 303 26 HOH HOH . I 5 HOH B 4 304 83 HOH HOH . I 5 HOH B 5 305 65 HOH HOH . I 5 HOH B 6 306 90 HOH HOH . I 5 HOH B 7 307 58 HOH HOH . I 5 HOH B 8 308 39 HOH HOH . I 5 HOH B 9 309 72 HOH HOH . I 5 HOH B 10 310 11 HOH HOH . I 5 HOH B 11 311 21 HOH HOH . I 5 HOH B 12 312 43 HOH HOH . I 5 HOH B 13 313 12 HOH HOH . I 5 HOH B 14 314 34 HOH HOH . I 5 HOH B 15 315 6 HOH HOH . I 5 HOH B 16 316 54 HOH HOH . I 5 HOH B 17 317 23 HOH HOH . I 5 HOH B 18 318 7 HOH HOH . I 5 HOH B 19 319 3 HOH HOH . I 5 HOH B 20 320 31 HOH HOH . I 5 HOH B 21 321 50 HOH HOH . I 5 HOH B 22 322 17 HOH HOH . I 5 HOH B 23 323 38 HOH HOH . I 5 HOH B 24 324 25 HOH HOH . I 5 HOH B 25 325 28 HOH HOH . I 5 HOH B 26 326 84 HOH HOH . I 5 HOH B 27 327 44 HOH HOH . I 5 HOH B 28 328 32 HOH HOH . I 5 HOH B 29 329 60 HOH HOH . I 5 HOH B 30 330 91 HOH HOH . I 5 HOH B 31 331 4 HOH HOH . I 5 HOH B 32 332 2 HOH HOH . I 5 HOH B 33 333 86 HOH HOH . I 5 HOH B 34 334 27 HOH HOH . I 5 HOH B 35 335 64 HOH HOH . I 5 HOH B 36 336 30 HOH HOH . I 5 HOH B 37 337 57 HOH HOH . I 5 HOH B 38 338 35 HOH HOH . I 5 HOH B 39 339 36 HOH HOH . I 5 HOH B 40 340 15 HOH HOH . I 5 HOH B 41 341 20 HOH HOH . I 5 HOH B 42 342 69 HOH HOH . I 5 HOH B 43 343 33 HOH HOH . I 5 HOH B 44 344 29 HOH HOH . I 5 HOH B 45 345 45 HOH HOH . I 5 HOH B 46 346 47 HOH HOH . I 5 HOH B 47 347 67 HOH HOH . I 5 HOH B 48 348 18 HOH HOH . I 5 HOH B 49 349 13 HOH HOH . I 5 HOH B 50 350 9 HOH HOH . I 5 HOH B 51 351 24 HOH HOH . I 5 HOH B 52 352 61 HOH HOH . I 5 HOH B 53 353 42 HOH HOH . I 5 HOH B 54 354 56 HOH HOH . I 5 HOH B 55 355 63 HOH HOH . I 5 HOH B 56 356 16 HOH HOH . I 5 HOH B 57 357 49 HOH HOH . I 5 HOH B 58 358 71 HOH HOH . I 5 HOH B 59 359 89 HOH HOH . I 5 HOH B 60 360 22 HOH HOH . I 5 HOH B 61 361 62 HOH HOH . I 5 HOH B 62 362 19 HOH HOH . I 5 HOH B 63 363 85 HOH HOH . I 5 HOH B 64 364 48 HOH HOH . I 5 HOH B 65 365 52 HOH HOH . I 5 HOH B 66 366 46 HOH HOH . I 5 HOH B 67 367 79 HOH HOH . I 5 HOH B 68 368 74 HOH HOH . I 5 HOH B 69 369 81 HOH HOH . I 5 HOH B 70 370 40 HOH HOH . I 5 HOH B 71 371 10 HOH HOH . I 5 HOH B 72 372 5 HOH HOH . I 5 HOH B 73 373 88 HOH HOH . I 5 HOH B 74 374 51 HOH HOH . I 5 HOH B 75 375 59 HOH HOH . I 5 HOH B 76 376 80 HOH HOH . I 5 HOH B 77 377 87 HOH HOH . I 5 HOH B 78 378 73 HOH HOH . I 5 HOH B 79 379 76 HOH HOH . I 5 HOH B 80 380 53 HOH HOH . I 5 HOH B 81 381 92 HOH HOH . I 5 HOH B 82 382 37 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.047 _atom_site.Cartn_y 14.745 _atom_site.Cartn_z 31.743 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #