data_6QQ6 # _model_server_result.job_id GsbVM8jfcy7qZg5etaqH1g _model_server_result.datetime_utc '2024-12-18 17:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 6QQ6 # _exptl.entry_id 6QQ6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QQ6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 76 A GLY 76 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc2 A OH TYR 78 A TYR 78 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc3 A NE2 HIS 331 A HIS 331 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc4 A OE1 GLU 407 A GLU 407 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc5 A OE2 GLU 407 A GLU 407 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 A ND1 HIS 486 A HIS 486 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 A NE2 HIS 537 A HIS 537 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 A NE2 HIS 538 A HIS 538 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc9 A NE2 HIS 629 A HIS 629 1_555 D FE HEM . A HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc10 A NE2 HIS 631 A HIS 631 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc11 C O1D HEM . A HEM 801 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc12 C O2D HEM . A HEM 801 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc13 D O1A HEM . A HEM 802 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc14 D O2A HEM . A HEM 802 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc15 D FE HEM . A HEM 802 1_555 P O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc16 E FE FE . A FE 803 1_555 P O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc17 B O GLY 76 B GLY 76 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc18 B OH TYR 78 B TYR 78 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc19 B NE2 HIS 331 B HIS 331 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc20 B OE1 GLU 407 B GLU 407 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc21 B OE2 GLU 407 B GLU 407 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc22 B ND1 HIS 486 B HIS 486 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc23 B NE2 HIS 537 B HIS 537 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc24 B NE2 HIS 538 B HIS 538 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc25 B NE2 HIS 629 B HIS 629 1_555 I FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc26 B NE2 HIS 631 B HIS 631 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc27 H O1D HEM . B HEM 801 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc28 H O2D HEM . B HEM 801 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc29 I O1A HEM . B HEM 802 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc30 I O2A HEM . B HEM 802 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc31 I FE HEM . B HEM 802 1_555 Q O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc32 J FE FE . B FE 803 1_555 Q O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6QQ6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 744 HEM HEM . D 2 HEM A 1 802 745 HEM HEM . E 3 FE A 1 803 746 FE FE . F 4 CA A 1 804 747 CA CA . G 5 LOP A 1 805 3 LOP LOP . H 2 HEM B 1 801 744 HEM HEM . I 2 HEM B 1 802 745 HEM HEM . J 3 FE B 1 803 746 FE FE . K 4 CA B 1 804 747 CA CA . L 5 LOP B 1 805 1 LOP LOP . M 5 LOP B 1 806 2 LOP LOP . N 6 LMT B 1 807 4 LMT LMT . O 6 LMT B 1 808 5 LMT LMT . P 7 HOH A 1 901 15 HOH HOH . P 7 HOH A 2 902 18 HOH HOH . P 7 HOH A 3 903 10 HOH HOH . P 7 HOH A 4 904 11 HOH HOH . P 7 HOH A 5 905 3 HOH HOH . P 7 HOH A 6 906 2 HOH HOH . P 7 HOH A 7 907 14 HOH HOH . P 7 HOH A 8 908 1 HOH HOH . P 7 HOH A 9 909 16 HOH HOH . Q 7 HOH B 1 901 6 HOH HOH . Q 7 HOH B 2 902 17 HOH HOH . Q 7 HOH B 3 903 12 HOH HOH . Q 7 HOH B 4 904 8 HOH HOH . Q 7 HOH B 5 905 7 HOH HOH . Q 7 HOH B 6 906 9 HOH HOH . Q 7 HOH B 7 907 13 HOH HOH . Q 7 HOH B 8 908 5 HOH HOH . Q 7 HOH B 9 909 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 128.409 115.551 97.66 1 43.37 ? CHA HEM 801 A 1 HETATM 2 C CHB HEM . . . C 2 128.256 120.237 98.836 1 43.37 ? CHB HEM 801 A 1 HETATM 3 C CHC HEM . . . C 2 128.802 119.089 103.487 1 43.37 ? CHC HEM 801 A 1 HETATM 4 C CHD HEM . . . C 2 128.919 114.378 102.339 1 43.37 ? CHD HEM 801 A 1 HETATM 5 C C1A HEM . . . C 2 128.363 116.919 97.566 1 43.37 ? C1A HEM 801 A 1 HETATM 6 C C2A HEM . . . C 2 128.333 117.688 96.345 1 43.37 ? C2A HEM 801 A 1 HETATM 7 C C3A HEM . . . C 2 128.297 118.976 96.668 1 43.37 ? C3A HEM 801 A 1 HETATM 8 C C4A HEM . . . C 2 128.295 119.074 98.109 1 43.37 ? C4A HEM 801 A 1 HETATM 9 C CMA HEM . . . C 2 128.258 120.162 95.685 1 43.37 ? CMA HEM 801 A 1 HETATM 10 C CAA HEM . . . C 2 128.359 117.112 94.921 1 43.37 ? CAA HEM 801 A 1 HETATM 11 C CBA HEM . . . C 2 126.96 117.008 94.334 1 43.37 ? CBA HEM 801 A 1 HETATM 12 C CGA HEM . . . C 2 127.124 116.429 92.962 1 43.37 ? CGA HEM 801 A 1 HETATM 13 O O1A HEM . . . C 2 127.703 115.322 92.86 1 43.37 ? O1A HEM 801 A 1 HETATM 14 O O2A HEM . . . C 2 126.692 117.072 91.975 1 43.37 ? O2A HEM 801 A 1 HETATM 15 C C1B HEM . . . C 2 128.395 120.331 100.198 1 43.37 ? C1B HEM 801 A 1 HETATM 16 C C2B HEM . . . C 2 128.411 121.564 100.946 1 43.37 ? C2B HEM 801 A 1 HETATM 17 C C3B HEM . . . C 2 128.566 121.259 102.251 1 43.37 ? C3B HEM 801 A 1 HETATM 18 C C4B HEM . . . C 2 128.647 119.817 102.336 1 43.37 ? C4B HEM 801 A 1 HETATM 19 C CMB HEM . . . C 2 128.267 122.92 100.227 1 43.37 ? CMB HEM 801 A 1 HETATM 20 C CAB HEM . . . C 2 128.657 122.137 103.529 1 43.37 ? CAB HEM 801 A 1 HETATM 21 C CBB HEM . . . C 2 128.571 123.471 103.628 1 43.37 ? CBB HEM 801 A 1 HETATM 22 C C1C HEM . . . C 2 128.874 117.719 103.576 1 43.37 ? C1C HEM 801 A 1 HETATM 23 C C2C HEM . . . C 2 129.021 116.986 104.802 1 43.37 ? C2C HEM 801 A 1 HETATM 24 C C3C HEM . . . C 2 129.058 115.684 104.536 1 43.37 ? C3C HEM 801 A 1 HETATM 25 C C4C HEM . . . C 2 128.931 115.534 103.091 1 43.37 ? C4C HEM 801 A 1 HETATM 26 C CMC HEM . . . C 2 129.127 117.63 106.194 1 43.37 ? CMC HEM 801 A 1 HETATM 27 C CAC HEM . . . C 2 129.22 114.631 105.658 1 43.37 ? CAC HEM 801 A 1 HETATM 28 C CBC HEM . . . C 2 129.502 113.339 105.474 1 43.37 ? CBC HEM 801 A 1 HETATM 29 C C1D HEM . . . C 2 128.748 114.294 100.978 1 43.37 ? C1D HEM 801 A 1 HETATM 30 C C2D HEM . . . C 2 128.575 113.08 100.22 1 43.37 ? C2D HEM 801 A 1 HETATM 31 C C3D HEM . . . C 2 128.432 113.405 98.945 1 43.37 ? C3D HEM 801 A 1 HETATM 32 C C4D HEM . . . C 2 128.51 114.837 98.829 1 43.37 ? C4D HEM 801 A 1 HETATM 33 C CMD HEM . . . C 2 128.553 111.648 100.774 1 43.37 ? CMD HEM 801 A 1 HETATM 34 C CAD HEM . . . C 2 128.225 112.419 97.787 1 43.37 ? CAD HEM 801 A 1 HETATM 35 C CBD HEM . . . C 2 126.749 112.35 97.426 1 43.37 ? CBD HEM 801 A 1 HETATM 36 C CGD HEM . . . C 2 126.609 111.513 96.188 1 43.37 ? CGD HEM 801 A 1 HETATM 37 O O1D HEM . . . C 2 127.635 111.243 95.522 1 43.37 ? O1D HEM 801 A 1 HETATM 38 O O2D HEM . . . C 2 125.474 111.108 95.856 1 43.37 ? O2D HEM 801 A 1 HETATM 39 N NA HEM . . . C 2 128.337 117.797 98.628 1 43.37 ? NA HEM 801 A 1 HETATM 40 N NB HEM . . . C 2 128.541 119.281 101.074 1 43.37 ? NB HEM 801 A 1 HETATM 41 N NC HEM . . . C 2 128.822 116.802 102.547 1 43.37 ? NC HEM 801 A 1 HETATM 42 N ND HEM . . . C 2 128.702 115.353 100.095 1 43.37 ? ND HEM 801 A 1 HETATM 43 FE FE HEM . . . C 2 128.679 117.314 100.581 1 43.37 ? FE HEM 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #