data_6QQ6 # _model_server_result.job_id 4qIu7N-3xYcEOg2eH6njmw _model_server_result.datetime_utc '2024-11-04 22:35:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":804}' # _entry.id 6QQ6 # _exptl.entry_id 6QQ6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QQ6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 76 A GLY 76 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc2 A OH TYR 78 A TYR 78 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc3 A NE2 HIS 331 A HIS 331 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc4 A OE1 GLU 407 A GLU 407 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc5 A OE2 GLU 407 A GLU 407 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 A ND1 HIS 486 A HIS 486 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 A NE2 HIS 537 A HIS 537 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 A NE2 HIS 538 A HIS 538 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc9 A NE2 HIS 629 A HIS 629 1_555 D FE HEM . A HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc10 A NE2 HIS 631 A HIS 631 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc11 C O1D HEM . A HEM 801 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc12 C O2D HEM . A HEM 801 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc13 D O1A HEM . A HEM 802 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc14 D O2A HEM . A HEM 802 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? metalc ? metalc15 D FE HEM . A HEM 802 1_555 P O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc16 E FE FE . A FE 803 1_555 P O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc17 B O GLY 76 B GLY 76 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc18 B OH TYR 78 B TYR 78 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc19 B NE2 HIS 331 B HIS 331 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc20 B OE1 GLU 407 B GLU 407 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc21 B OE2 GLU 407 B GLU 407 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc22 B ND1 HIS 486 B HIS 486 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc23 B NE2 HIS 537 B HIS 537 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc24 B NE2 HIS 538 B HIS 538 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc25 B NE2 HIS 629 B HIS 629 1_555 I FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc26 B NE2 HIS 631 B HIS 631 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc27 H O1D HEM . B HEM 801 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc28 H O2D HEM . B HEM 801 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc29 I O1A HEM . B HEM 802 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc30 I O2A HEM . B HEM 802 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc31 I FE HEM . B HEM 802 1_555 Q O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc32 J FE FE . B FE 803 1_555 Q O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6QQ6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 801 744 HEM HEM . D 2 HEM A 1 802 745 HEM HEM . E 3 FE A 1 803 746 FE FE . F 4 CA A 1 804 747 CA CA . G 5 LOP A 1 805 3 LOP LOP . H 2 HEM B 1 801 744 HEM HEM . I 2 HEM B 1 802 745 HEM HEM . J 3 FE B 1 803 746 FE FE . K 4 CA B 1 804 747 CA CA . L 5 LOP B 1 805 1 LOP LOP . M 5 LOP B 1 806 2 LOP LOP . N 6 LMT B 1 807 4 LMT LMT . O 6 LMT B 1 808 5 LMT LMT . P 7 HOH A 1 901 15 HOH HOH . P 7 HOH A 2 902 18 HOH HOH . P 7 HOH A 3 903 10 HOH HOH . P 7 HOH A 4 904 11 HOH HOH . P 7 HOH A 5 905 3 HOH HOH . P 7 HOH A 6 906 2 HOH HOH . P 7 HOH A 7 907 14 HOH HOH . P 7 HOH A 8 908 1 HOH HOH . P 7 HOH A 9 909 16 HOH HOH . Q 7 HOH B 1 901 6 HOH HOH . Q 7 HOH B 2 902 17 HOH HOH . Q 7 HOH B 3 903 12 HOH HOH . Q 7 HOH B 4 904 8 HOH HOH . Q 7 HOH B 5 905 7 HOH HOH . Q 7 HOH B 6 906 9 HOH HOH . Q 7 HOH B 7 907 13 HOH HOH . Q 7 HOH B 8 908 5 HOH HOH . Q 7 HOH B 9 909 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x 83.067 _atom_site.Cartn_y 100.141 _atom_site.Cartn_z 94.216 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 804 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #