data_6QQ6
#
_model_server_result.job_id            Lkv0BdAGbYHTM_Emo5CXPw 
_model_server_result.datetime_utc      '2024-12-18 17:44:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6qq6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":807}' 
#
_entry.id    6QQ6 
#
_exptl.entry_id    6QQ6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6QQ6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6QQ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 N N N 
? 6 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 76 A GLY 76 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc2 A OH TYR 78 A TYR 78 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc3 A NE2 HIS 331 A HIS 331 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc4 A OE1 GLU 407 A GLU 407 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? 
metalc ? metalc5 A OE2 GLU 407 A GLU 407 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc6 A ND1 HIS 486 A HIS 486 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc7 A NE2 HIS 537 A HIS 537 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc8 A NE2 HIS 538 A HIS 538 1_555 E FE FE . A FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc9 A NE2 HIS 629 A HIS 629 1_555 D FE HEM . A HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
metalc ? metalc10 A NE2 HIS 631 A HIS 631 1_555 C FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc11 C O1D HEM . A HEM 801 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc12 C O2D HEM . A HEM 801 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc13 D O1A HEM . A HEM 802 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc14 D O2A HEM . A HEM 802 1_555 F CA CA . A CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.019 ? 
metalc ? metalc15 D FE HEM . A HEM 802 1_555 P O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc16 E FE FE . A FE 803 1_555 P O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc17 B O GLY 76 B GLY 76 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc18 B OH TYR 78 B TYR 78 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc19 B NE2 HIS 331 B HIS 331 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc20 B OE1 GLU 407 B GLU 407 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? 
metalc ? metalc21 B OE2 GLU 407 B GLU 407 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc22 B ND1 HIS 486 B HIS 486 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc23 B NE2 HIS 537 B HIS 537 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc24 B NE2 HIS 538 B HIS 538 1_555 J FE FE . B FE 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc25 B NE2 HIS 629 B HIS 629 1_555 I FE HEM . B HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? 
metalc ? metalc26 B NE2 HIS 631 B HIS 631 1_555 H FE HEM . B HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc27 H O1D HEM . B HEM 801 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc28 H O2D HEM . B HEM 801 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc29 I O1A HEM . B HEM 802 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc30 I O2A HEM . B HEM 802 1_555 K CA CA . B CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
metalc ? metalc31 I FE HEM . B HEM 802 1_555 Q O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
metalc ? metalc32 J FE FE . B FE 803 1_555 Q O HOH . B HOH 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 276 n n 
C1B O1B LMT sing 277 n n 
C1B O5B LMT sing 278 n n 
C1B H1B LMT sing 279 n n 
C2B C3B LMT sing 280 n n 
C2B O2B LMT sing 281 n n 
C2B H2B LMT sing 282 n n 
C3B C4B LMT sing 283 n n 
C3B O3B LMT sing 284 n n 
C3B H3B LMT sing 285 n n 
C4B C5B LMT sing 286 n n 
C4B O4' LMT sing 287 n n 
C4B H4B LMT sing 288 n n 
C5B C6B LMT sing 289 n n 
C5B O5B LMT sing 290 n n 
C5B H5B LMT sing 291 n n 
C6B O6B LMT sing 292 n n 
C6B "H6'2" LMT sing 293 n n 
C6B "H6'1" LMT sing 294 n n 
O1B C4' LMT sing 295 n n 
O2B H2O1 LMT sing 296 n n 
O3B H3O1 LMT sing 297 n n 
O4' H4O1 LMT sing 298 n n 
O6B H6B LMT sing 299 n n 
C1' C2' LMT sing 300 n n 
C1' O1' LMT sing 301 n n 
C1' O5' LMT sing 302 n n 
C1' H1' LMT sing 303 n n 
C2' C3' LMT sing 304 n n 
C2' O2' LMT sing 305 n n 
C2' H2' LMT sing 306 n n 
C3' C4' LMT sing 307 n n 
C3' O3' LMT sing 308 n n 
C3' H3' LMT sing 309 n n 
C4' C5' LMT sing 310 n n 
C4' H4' LMT sing 311 n n 
C5' C6' LMT sing 312 n n 
C5' O5' LMT sing 313 n n 
C5' H5' LMT sing 314 n n 
C6' O6' LMT sing 315 n n 
C6' H6D LMT sing 316 n n 
C6' H6E LMT sing 317 n n 
O1' C1 LMT sing 318 n n 
O2' H2O2 LMT sing 319 n n 
O3' H3O2 LMT sing 320 n n 
O6' H6' LMT sing 321 n n 
C1 C2 LMT sing 322 n n 
C1 H12 LMT sing 323 n n 
C1 H11 LMT sing 324 n n 
C2 C3 LMT sing 325 n n 
C2 H22 LMT sing 326 n n 
C2 H21 LMT sing 327 n n 
C3 C4 LMT sing 328 n n 
C3 H32 LMT sing 329 n n 
C3 H31 LMT sing 330 n n 
C4 C5 LMT sing 331 n n 
C4 H42 LMT sing 332 n n 
C4 H41 LMT sing 333 n n 
C5 C6 LMT sing 334 n n 
C5 H52 LMT sing 335 n n 
C5 H51 LMT sing 336 n n 
C6 C7 LMT sing 337 n n 
C6 H62 LMT sing 338 n n 
C6 H61 LMT sing 339 n n 
C7 C8 LMT sing 340 n n 
C7 H72 LMT sing 341 n n 
C7 H71 LMT sing 342 n n 
C8 C9 LMT sing 343 n n 
C8 H82 LMT sing 344 n n 
C8 H81 LMT sing 345 n n 
C9 C10 LMT sing 346 n n 
C9 H92 LMT sing 347 n n 
C9 H91 LMT sing 348 n n 
C10 C11 LMT sing 349 n n 
C10 H102 LMT sing 350 n n 
C10 H101 LMT sing 351 n n 
C11 C12 LMT sing 352 n n 
C11 H112 LMT sing 353 n n 
C11 H111 LMT sing 354 n n 
C12 H123 LMT sing 355 n n 
C12 H122 LMT sing 356 n n 
C12 H121 LMT sing 357 n n 
#
_atom_sites.entry_id                     6QQ6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 801 744 HEM HEM . 
D 2 HEM A 1 802 745 HEM HEM . 
E 3 FE A 1 803 746 FE FE . 
F 4 CA A 1 804 747 CA CA . 
G 5 LOP A 1 805 3 LOP LOP . 
H 2 HEM B 1 801 744 HEM HEM . 
I 2 HEM B 1 802 745 HEM HEM . 
J 3 FE B 1 803 746 FE FE . 
K 4 CA B 1 804 747 CA CA . 
L 5 LOP B 1 805 1 LOP LOP . 
M 5 LOP B 1 806 2 LOP LOP . 
N 6 LMT B 1 807 4 LMT LMT . 
O 6 LMT B 1 808 5 LMT LMT . 
P 7 HOH A 1 901 15 HOH HOH . 
P 7 HOH A 2 902 18 HOH HOH . 
P 7 HOH A 3 903 10 HOH HOH . 
P 7 HOH A 4 904 11 HOH HOH . 
P 7 HOH A 5 905 3 HOH HOH . 
P 7 HOH A 6 906 2 HOH HOH . 
P 7 HOH A 7 907 14 HOH HOH . 
P 7 HOH A 8 908 1 HOH HOH . 
P 7 HOH A 9 909 16 HOH HOH . 
Q 7 HOH B 1 901 6 HOH HOH . 
Q 7 HOH B 2 902 17 HOH HOH . 
Q 7 HOH B 3 903 12 HOH HOH . 
Q 7 HOH B 4 904 8 HOH HOH . 
Q 7 HOH B 5 905 7 HOH HOH . 
Q 7 HOH B 6 906 9 HOH HOH . 
Q 7 HOH B 7 907 13 HOH HOH . 
Q 7 HOH B 8 908 5 HOH HOH . 
Q 7 HOH B 9 909 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . N 6 103.548 100.588 78.9 1 35.81 ? C1B LMT 807 B 1 
HETATM 2 C C2B LMT . . . N 6 103.454 99.274 78.136 1 35.81 ? C2B LMT 807 B 1 
HETATM 3 C C3B LMT . . . N 6 104.44 99.221 77.02 1 35.81 ? C3B LMT 807 B 1 
HETATM 4 C C4B LMT . . . N 6 104.364 100.394 76.086 1 35.81 ? C4B LMT 807 B 1 
HETATM 5 C C5B LMT . . . N 6 104.348 101.734 76.83 1 35.81 ? C5B LMT 807 B 1 
HETATM 6 C C6B LMT . . . N 6 104.002 102.828 75.861 1 35.81 ? C6B LMT 807 B 1 
HETATM 7 O O1B LMT . . . N 6 104.8 100.652 79.489 1 35.81 ? O1B LMT 807 B 1 
HETATM 8 O O2B LMT . . . N 6 103.712 98.168 79.019 1 35.81 ? O2B LMT 807 B 1 
HETATM 9 O O3B LMT . . . N 6 104.215 98 76.258 1 35.81 ? O3B LMT 807 B 1 
HETATM 10 O O4' LMT . . . N 6 105.501 100.365 75.22 1 35.81 ? O4' LMT 807 B 1 
HETATM 11 O O5B LMT . . . N 6 103.366 101.733 77.935 1 35.81 ? O5B LMT 807 B 1 
HETATM 12 O O6B LMT . . . N 6 104.8 103.953 76.113 1 35.81 ? O6B LMT 807 B 1 
HETATM 13 C C1' LMT . . . N 6 104.287 102.199 83.539 1 35.81 ? C1' LMT 807 B 1 
HETATM 14 C C2' LMT . . . N 6 104.127 103.144 82.348 1 35.81 ? C2' LMT 807 B 1 
HETATM 15 C C3' LMT . . . N 6 104.161 102.548 80.975 1 35.81 ? C3' LMT 807 B 1 
HETATM 16 C C4' LMT . . . N 6 104.907 101.255 80.832 1 35.81 ? C4' LMT 807 B 1 
HETATM 17 C C5' LMT . . . N 6 104.533 100.282 81.951 1 35.81 ? C5' LMT 807 B 1 
HETATM 18 C C6' LMT . . . N 6 105.249 98.994 81.782 1 35.81 ? C6' LMT 807 B 1 
HETATM 19 O O1' LMT . . . N 6 105.056 102.877 84.438 1 35.81 ? O1' LMT 807 B 1 
HETATM 20 O O2' LMT . . . N 6 102.862 103.82 82.495 1 35.81 ? O2' LMT 807 B 1 
HETATM 21 O O3' LMT . . . N 6 104.776 103.518 80.084 1 35.81 ? O3' LMT 807 B 1 
HETATM 22 O O5' LMT . . . N 6 104.927 100.875 83.248 1 35.81 ? O5' LMT 807 B 1 
HETATM 23 O O6' LMT . . . N 6 105.703 98.545 83.031 1 35.81 ? O6' LMT 807 B 1 
HETATM 24 C C1 LMT . . . N 6 105.082 102.34 85.731 1 35.81 ? C1 LMT 807 B 1 
HETATM 25 C C2 LMT . . . N 6 103.742 102.559 86.46 1 35.81 ? C2 LMT 807 B 1 
HETATM 26 C C3 LMT . . . N 6 104.005 103.263 87.789 1 35.81 ? C3 LMT 807 B 1 
HETATM 27 C C4 LMT . . . N 6 102.914 102.965 88.85 1 35.81 ? C4 LMT 807 B 1 
HETATM 28 C C5 LMT . . . N 6 103.567 103.13 90.239 1 35.81 ? C5 LMT 807 B 1 
HETATM 29 C C6 LMT . . . N 6 102.705 102.44 91.345 1 35.81 ? C6 LMT 807 B 1 
HETATM 30 C C7 LMT . . . N 6 103.406 102.648 92.712 1 35.81 ? C7 LMT 807 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#