data_6QQH # _model_server_result.job_id E5cKYmORnm4wqqPgwENhKw _model_server_result.datetime_utc '2024-11-04 23:21:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6QQH # _exptl.entry_id 6QQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QQH _cell.length_a 40.148 _cell.length_b 40.148 _cell.length_c 131.575 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6QQH _atom_sites.fract_transf_matrix[1][1] 0.024908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1001 1001 FMN FMN . C 3 HOH A 1 1101 18 HOH HOH . C 3 HOH A 2 1102 102 HOH HOH . C 3 HOH A 3 1103 81 HOH HOH . C 3 HOH A 4 1104 93 HOH HOH . C 3 HOH A 5 1105 88 HOH HOH . C 3 HOH A 6 1106 21 HOH HOH . C 3 HOH A 7 1107 90 HOH HOH . C 3 HOH A 8 1108 91 HOH HOH . C 3 HOH A 9 1109 101 HOH HOH . C 3 HOH A 10 1110 112 HOH HOH . C 3 HOH A 11 1111 16 HOH HOH . C 3 HOH A 12 1112 43 HOH HOH . C 3 HOH A 13 1113 34 HOH HOH . C 3 HOH A 14 1114 20 HOH HOH . C 3 HOH A 15 1115 89 HOH HOH . C 3 HOH A 16 1116 56 HOH HOH . C 3 HOH A 17 1117 73 HOH HOH . C 3 HOH A 18 1118 13 HOH HOH . C 3 HOH A 19 1119 52 HOH HOH . C 3 HOH A 20 1120 45 HOH HOH . C 3 HOH A 21 1121 82 HOH HOH . C 3 HOH A 22 1122 58 HOH HOH . C 3 HOH A 23 1123 62 HOH HOH . C 3 HOH A 24 1124 96 HOH HOH . C 3 HOH A 25 1125 1 HOH HOH . C 3 HOH A 26 1126 49 HOH HOH . C 3 HOH A 27 1127 36 HOH HOH . C 3 HOH A 28 1128 42 HOH HOH . C 3 HOH A 29 1129 105 HOH HOH . C 3 HOH A 30 1130 54 HOH HOH . C 3 HOH A 31 1131 4 HOH HOH . C 3 HOH A 32 1132 86 HOH HOH . C 3 HOH A 33 1133 79 HOH HOH . C 3 HOH A 34 1134 68 HOH HOH . C 3 HOH A 35 1135 94 HOH HOH . C 3 HOH A 36 1136 41 HOH HOH . C 3 HOH A 37 1137 109 HOH HOH . C 3 HOH A 38 1138 33 HOH HOH . C 3 HOH A 39 1139 85 HOH HOH . C 3 HOH A 40 1140 59 HOH HOH . C 3 HOH A 41 1141 25 HOH HOH . C 3 HOH A 42 1142 65 HOH HOH . C 3 HOH A 43 1143 53 HOH HOH . C 3 HOH A 44 1144 31 HOH HOH . C 3 HOH A 45 1145 40 HOH HOH . C 3 HOH A 46 1146 6 HOH HOH . C 3 HOH A 47 1147 99 HOH HOH . C 3 HOH A 48 1148 26 HOH HOH . C 3 HOH A 49 1149 12 HOH HOH . C 3 HOH A 50 1150 66 HOH HOH . C 3 HOH A 51 1151 3 HOH HOH . C 3 HOH A 52 1152 35 HOH HOH . C 3 HOH A 53 1153 55 HOH HOH . C 3 HOH A 54 1154 28 HOH HOH . C 3 HOH A 55 1155 67 HOH HOH . C 3 HOH A 56 1156 51 HOH HOH . C 3 HOH A 57 1157 47 HOH HOH . C 3 HOH A 58 1158 76 HOH HOH . C 3 HOH A 59 1159 29 HOH HOH . C 3 HOH A 60 1160 8 HOH HOH . C 3 HOH A 61 1161 37 HOH HOH . C 3 HOH A 62 1162 38 HOH HOH . C 3 HOH A 63 1163 72 HOH HOH . C 3 HOH A 64 1164 30 HOH HOH . C 3 HOH A 65 1165 44 HOH HOH . C 3 HOH A 66 1166 69 HOH HOH . C 3 HOH A 67 1167 74 HOH HOH . C 3 HOH A 68 1168 111 HOH HOH . C 3 HOH A 69 1169 48 HOH HOH . C 3 HOH A 70 1170 108 HOH HOH . C 3 HOH A 71 1171 17 HOH HOH . C 3 HOH A 72 1172 15 HOH HOH . C 3 HOH A 73 1173 84 HOH HOH . C 3 HOH A 74 1174 95 HOH HOH . C 3 HOH A 75 1175 71 HOH HOH . C 3 HOH A 76 1176 97 HOH HOH . C 3 HOH A 77 1177 87 HOH HOH . C 3 HOH A 78 1178 32 HOH HOH . C 3 HOH A 79 1179 24 HOH HOH . C 3 HOH A 80 1180 64 HOH HOH . C 3 HOH A 81 1181 22 HOH HOH . C 3 HOH A 82 1182 23 HOH HOH . C 3 HOH A 83 1183 5 HOH HOH . C 3 HOH A 84 1184 19 HOH HOH . C 3 HOH A 85 1185 61 HOH HOH . C 3 HOH A 86 1186 98 HOH HOH . C 3 HOH A 87 1187 46 HOH HOH . C 3 HOH A 88 1188 60 HOH HOH . C 3 HOH A 89 1189 57 HOH HOH . C 3 HOH A 90 1190 7 HOH HOH . C 3 HOH A 91 1191 10 HOH HOH . C 3 HOH A 92 1192 100 HOH HOH . C 3 HOH A 93 1193 106 HOH HOH . C 3 HOH A 94 1194 50 HOH HOH . C 3 HOH A 95 1195 39 HOH HOH . C 3 HOH A 96 1196 78 HOH HOH . C 3 HOH A 97 1197 83 HOH HOH . C 3 HOH A 98 1198 27 HOH HOH . C 3 HOH A 99 1199 110 HOH HOH . C 3 HOH A 100 1200 107 HOH HOH . C 3 HOH A 101 1201 103 HOH HOH . C 3 HOH A 102 1202 92 HOH HOH . C 3 HOH A 103 1203 63 HOH HOH . C 3 HOH A 104 1204 75 HOH HOH . C 3 HOH A 105 1205 9 HOH HOH . C 3 HOH A 106 1206 104 HOH HOH . C 3 HOH A 107 1207 77 HOH HOH . C 3 HOH A 108 1208 80 HOH HOH . C 3 HOH A 109 1209 14 HOH HOH . C 3 HOH A 110 1210 70 HOH HOH . C 3 HOH A 111 1211 11 HOH HOH . C 3 HOH A 112 1212 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 7.059 1.568 12.845 1 11.63 ? N1 FMN 1001 A 1 HETATM 2 C C2 FMN . . . B 2 7.707 1.771 14.01 1 11.8 ? C2 FMN 1001 A 1 HETATM 3 O O2 FMN . . . B 2 8.45 2.776 14.124 1 12.89 ? O2 FMN 1001 A 1 HETATM 4 N N3 FMN . . . B 2 7.561 0.915 15.041 1 11.46 ? N3 FMN 1001 A 1 HETATM 5 C C4 FMN . . . B 2 6.767 -0.176 15.018 1 11.63 ? C4 FMN 1001 A 1 HETATM 6 O O4 FMN . . . B 2 6.678 -0.973 15.984 1 12.56 ? O4 FMN 1001 A 1 HETATM 7 C C4A FMN . . . B 2 6.021 -0.449 13.797 1 11.56 ? C4A FMN 1001 A 1 HETATM 8 N N5 FMN . . . B 2 5.208 -1.52 13.661 1 11.84 ? N5 FMN 1001 A 1 HETATM 9 C C5A FMN . . . B 2 4.549 -1.749 12.494 1 11.41 ? C5A FMN 1001 A 1 HETATM 10 C C6 FMN . . . B 2 3.699 -2.846 12.38 1 12.59 ? C6 FMN 1001 A 1 HETATM 11 C C7 FMN . . . B 2 3.024 -3.098 11.204 1 13.04 ? C7 FMN 1001 A 1 HETATM 12 C C7M FMN . . . B 2 2.116 -4.295 11.079 1 12.87 ? C7M FMN 1001 A 1 HETATM 13 C C8 FMN . . . B 2 3.216 -2.19 10.069 1 12.1 ? C8 FMN 1001 A 1 HETATM 14 C C8M FMN . . . B 2 2.485 -2.434 8.78 1 12.87 ? C8M FMN 1001 A 1 HETATM 15 C C9 FMN . . . B 2 4.043 -1.076 10.189 1 12.08 ? C9 FMN 1001 A 1 HETATM 16 C C9A FMN . . . B 2 4.725 -0.824 11.365 1 11.61 ? C9A FMN 1001 A 1 HETATM 17 N N10 FMN . . . B 2 5.566 0.3 11.51 1 10.94 ? N10 FMN 1001 A 1 HETATM 18 C C10 FMN . . . B 2 6.244 0.5 12.702 1 11.39 ? C10 FMN 1001 A 1 HETATM 19 C C1' FMN . . . B 2 5.872 1.207 10.396 1 11.17 ? C1' FMN 1001 A 1 HETATM 20 C C2' FMN . . . B 2 4.964 2.377 10.169 1 11.63 ? C2' FMN 1001 A 1 HETATM 21 O O2' FMN . . . B 2 3.614 1.958 10.375 1 12.31 ? O2' FMN 1001 A 1 HETATM 22 C C3' FMN . . . B 2 5.154 2.901 8.742 1 12.09 ? C3' FMN 1001 A 1 HETATM 23 O O3' FMN . . . B 2 4.887 1.842 7.815 1 13.84 ? O3' FMN 1001 A 1 HETATM 24 C C4' FMN . . . B 2 6.56 3.444 8.477 1 12.35 ? C4' FMN 1001 A 1 HETATM 25 O O4' FMN . . . B 2 6.77 4.584 9.314 1 12.74 ? O4' FMN 1001 A 1 HETATM 26 C C5' FMN . . . B 2 6.807 3.793 7.002 1 13.32 ? C5' FMN 1001 A 1 HETATM 27 O O5' FMN . . . B 2 5.749 4.546 6.437 1 14.59 ? O5' FMN 1001 A 1 HETATM 28 P P FMN . . . B 2 5.615 6.14 6.533 1 15.77 ? P FMN 1001 A 1 HETATM 29 O O1P FMN . . . B 2 4.291 6.36 5.828 1 16.15 ? O1P FMN 1001 A 1 HETATM 30 O O2P FMN . . . B 2 5.553 6.489 8.006 1 15.86 ? O2P FMN 1001 A 1 HETATM 31 O O3P FMN . . . B 2 6.813 6.746 5.827 1 17.21 ? O3P FMN 1001 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #