data_6QQI # _model_server_result.job_id qfhsHJR8Tq6eRWtAdvHnQg _model_server_result.datetime_utc '2024-11-12 20:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6qqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6QQI # _exptl.entry_id 6QQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6QQI _cell.length_a 40.324 _cell.length_b 40.324 _cell.length_c 131.278 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6QQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 426 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id FMN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FMN _struct_conn.ptnr2_auth_seq_id 1001 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id C _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id C _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.81 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6QQI _atom_sites.fract_transf_matrix[1][1] 0.024799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1001 1001 FMN FMN . C 3 HOH A 1 1101 95 HOH HOH . C 3 HOH A 2 1102 78 HOH HOH . C 3 HOH A 3 1103 41 HOH HOH . C 3 HOH A 4 1104 40 HOH HOH . C 3 HOH A 5 1105 53 HOH HOH . C 3 HOH A 6 1106 5 HOH HOH . C 3 HOH A 7 1107 52 HOH HOH . C 3 HOH A 8 1108 19 HOH HOH . C 3 HOH A 9 1109 34 HOH HOH . C 3 HOH A 10 1110 46 HOH HOH . C 3 HOH A 11 1111 92 HOH HOH . C 3 HOH A 12 1112 89 HOH HOH . C 3 HOH A 13 1113 77 HOH HOH . C 3 HOH A 14 1114 54 HOH HOH . C 3 HOH A 15 1115 14 HOH HOH . C 3 HOH A 16 1116 50 HOH HOH . C 3 HOH A 17 1117 87 HOH HOH . C 3 HOH A 18 1118 33 HOH HOH . C 3 HOH A 19 1119 26 HOH HOH . C 3 HOH A 20 1120 22 HOH HOH . C 3 HOH A 21 1121 30 HOH HOH . C 3 HOH A 22 1122 4 HOH HOH . C 3 HOH A 23 1123 11 HOH HOH . C 3 HOH A 24 1124 44 HOH HOH . C 3 HOH A 25 1125 3 HOH HOH . C 3 HOH A 26 1126 21 HOH HOH . C 3 HOH A 27 1127 75 HOH HOH . C 3 HOH A 28 1128 20 HOH HOH . C 3 HOH A 29 1129 15 HOH HOH . C 3 HOH A 30 1130 10 HOH HOH . C 3 HOH A 31 1131 62 HOH HOH . C 3 HOH A 32 1132 49 HOH HOH . C 3 HOH A 33 1133 13 HOH HOH . C 3 HOH A 34 1134 59 HOH HOH . C 3 HOH A 35 1135 37 HOH HOH . C 3 HOH A 36 1136 84 HOH HOH . C 3 HOH A 37 1137 73 HOH HOH . C 3 HOH A 38 1138 57 HOH HOH . C 3 HOH A 39 1139 27 HOH HOH . C 3 HOH A 40 1140 76 HOH HOH . C 3 HOH A 41 1141 35 HOH HOH . C 3 HOH A 42 1142 70 HOH HOH . C 3 HOH A 43 1143 61 HOH HOH . C 3 HOH A 44 1144 9 HOH HOH . C 3 HOH A 45 1145 96 HOH HOH . C 3 HOH A 46 1146 66 HOH HOH . C 3 HOH A 47 1147 17 HOH HOH . C 3 HOH A 48 1148 28 HOH HOH . C 3 HOH A 49 1149 71 HOH HOH . C 3 HOH A 50 1150 2 HOH HOH . C 3 HOH A 51 1151 8 HOH HOH . C 3 HOH A 52 1152 58 HOH HOH . C 3 HOH A 53 1153 51 HOH HOH . C 3 HOH A 54 1154 97 HOH HOH . C 3 HOH A 55 1155 32 HOH HOH . C 3 HOH A 56 1156 6 HOH HOH . C 3 HOH A 57 1157 68 HOH HOH . C 3 HOH A 58 1158 67 HOH HOH . C 3 HOH A 59 1159 88 HOH HOH . C 3 HOH A 60 1160 48 HOH HOH . C 3 HOH A 61 1161 24 HOH HOH . C 3 HOH A 62 1162 36 HOH HOH . C 3 HOH A 63 1163 7 HOH HOH . C 3 HOH A 64 1164 69 HOH HOH . C 3 HOH A 65 1165 38 HOH HOH . C 3 HOH A 66 1166 1 HOH HOH . C 3 HOH A 67 1167 90 HOH HOH . C 3 HOH A 68 1168 60 HOH HOH . C 3 HOH A 69 1169 56 HOH HOH . C 3 HOH A 70 1170 16 HOH HOH . C 3 HOH A 71 1171 72 HOH HOH . C 3 HOH A 72 1172 12 HOH HOH . C 3 HOH A 73 1173 47 HOH HOH . C 3 HOH A 74 1174 18 HOH HOH . C 3 HOH A 75 1175 45 HOH HOH . C 3 HOH A 76 1176 81 HOH HOH . C 3 HOH A 77 1177 63 HOH HOH . C 3 HOH A 78 1178 83 HOH HOH . C 3 HOH A 79 1179 80 HOH HOH . C 3 HOH A 80 1180 42 HOH HOH . C 3 HOH A 81 1181 65 HOH HOH . C 3 HOH A 82 1182 91 HOH HOH . C 3 HOH A 83 1183 64 HOH HOH . C 3 HOH A 84 1184 43 HOH HOH . C 3 HOH A 85 1185 25 HOH HOH . C 3 HOH A 86 1186 55 HOH HOH . C 3 HOH A 87 1187 39 HOH HOH . C 3 HOH A 88 1188 94 HOH HOH . C 3 HOH A 89 1189 29 HOH HOH . C 3 HOH A 90 1190 74 HOH HOH . C 3 HOH A 91 1191 23 HOH HOH . C 3 HOH A 92 1192 85 HOH HOH . C 3 HOH A 93 1193 31 HOH HOH . C 3 HOH A 94 1194 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . A . B 2 7.25 1.523 12.738 0.5 15.24 ? N1 FMN 1001 A 1 HETATM 2 N N1 FMN . C . B 2 6.924 1.662 13.027 0.5 17.18 ? N1 FMN 1001 A 1 HETATM 3 C C2 FMN . A . B 2 7.883 1.747 13.916 0.5 15.37 ? C2 FMN 1001 A 1 HETATM 4 C C2 FMN . C . B 2 7.482 1.873 14.243 0.5 17.58 ? C2 FMN 1001 A 1 HETATM 5 O O2 FMN . A . B 2 8.593 2.775 13.975 0.5 14.96 ? O2 FMN 1001 A 1 HETATM 6 O O2 FMN . C . B 2 8.199 2.883 14.373 0.5 17.53 ? O2 FMN 1001 A 1 HETATM 7 N N3 FMN . A . B 2 7.775 0.922 14.986 0.5 15.15 ? N3 FMN 1001 A 1 HETATM 8 N N3 FMN . C . B 2 7.299 1.056 15.301 0.5 17.6 ? N3 FMN 1001 A 1 HETATM 9 C C4 FMN . A . B 2 7.007 -0.188 14.948 0.5 15.48 ? C4 FMN 1001 A 1 HETATM 10 C C4 FMN . C . B 2 6.563 -0.063 15.219 0.5 17.52 ? C4 FMN 1001 A 1 HETATM 11 O O4 FMN . A . B 2 6.887 -0.982 15.907 0.5 14.91 ? O4 FMN 1001 A 1 HETATM 12 O O4 FMN . C . B 2 6.376 -0.805 16.202 0.5 18.07 ? O4 FMN 1001 A 1 HETATM 13 C C4A FMN . A . B 2 6.296 -0.5 13.699 0.5 15.52 ? C4A FMN 1001 A 1 HETATM 14 C C4A FMN . C . B 2 5.815 -0.312 13.983 0.5 17.49 ? C4A FMN 1001 A 1 HETATM 15 N N5 FMN . A . B 2 5.533 -1.604 13.59 0.5 15.21 ? N5 FMN 1001 A 1 HETATM 16 N N5 FMN . C . B 2 5.091 -1.548 13.735 0.5 17.68 ? N5 FMN 1001 A 1 HETATM 17 C C5A FMN . A . B 2 4.885 -1.869 12.445 0.5 15.29 ? C5A FMN 1001 A 1 HETATM 18 C C5A FMN . C . B 2 4.52 -1.731 12.532 0.5 17.68 ? C5A FMN 1001 A 1 HETATM 19 C C6 FMN . A . B 2 4.094 -3.008 12.355 0.5 15.21 ? C6 FMN 1001 A 1 HETATM 20 C C6 FMN . C . B 2 3.72 -2.849 12.362 0.5 17.68 ? C6 FMN 1001 A 1 HETATM 21 C C7 FMN . A . B 2 3.428 -3.29 11.168 0.5 15.13 ? C7 FMN 1001 A 1 HETATM 22 C C7 FMN . C . B 2 3.137 -3.107 11.132 0.5 17.52 ? C7 FMN 1001 A 1 HETATM 23 C C7M FMN . A . B 2 2.565 -4.521 11.064 0.5 15.09 ? C7M FMN 1001 A 1 HETATM 24 C C7M FMN . C . B 2 2.269 -4.326 10.951 0.5 17.52 ? C7M FMN 1001 A 1 HETATM 25 C C8 FMN . A . B 2 3.562 -2.373 10.007 0.5 15.38 ? C8 FMN 1001 A 1 HETATM 26 C C8 FMN . C . B 2 3.369 -2.171 10.004 0.5 17.58 ? C8 FMN 1001 A 1 HETATM 27 C C8M FMN . A . B 2 2.843 -2.661 8.724 0.5 15.3 ? C8M FMN 1001 A 1 HETATM 28 C C8M FMN . C . B 2 2.745 -2.44 8.669 0.5 17.39 ? C8M FMN 1001 A 1 HETATM 29 C C9 FMN . A . B 2 4.355 -1.233 10.093 0.5 15.27 ? C9 FMN 1001 A 1 HETATM 30 C C9 FMN . C . B 2 4.175 -1.044 10.166 0.5 17.41 ? C9 FMN 1001 A 1 HETATM 31 C C9A FMN . A . B 2 5.017 -0.957 11.278 0.5 15.43 ? C9A FMN 1001 A 1 HETATM 32 C C9A FMN . C . B 2 4.759 -0.786 11.398 0.5 17.59 ? C9A FMN 1001 A 1 HETATM 33 N N10 FMN . A . B 2 5.801 0.203 11.375 0.5 15.19 ? N10 FMN 1001 A 1 HETATM 34 N N10 FMN . C . B 2 5.559 0.367 11.574 0.5 17.27 ? N10 FMN 1001 A 1 HETATM 35 C C10 FMN . A . B 2 6.467 0.444 12.577 0.5 15.49 ? C10 FMN 1001 A 1 HETATM 36 C C10 FMN . C . B 2 6.163 0.582 12.81 0.5 17.38 ? C10 FMN 1001 A 1 HETATM 37 C C1' FMN . A . B 2 5.997 1.071 10.214 0.5 15.29 ? C1' FMN 1001 A 1 HETATM 38 C C1' FMN . C . B 2 5.898 1.305 10.497 0.5 17.56 ? C1' FMN 1001 A 1 HETATM 39 C C2' FMN . A . B 2 5.2 2.344 10.098 0.5 15.23 ? C2' FMN 1001 A 1 HETATM 40 C C2' FMN . C . B 2 4.878 2.315 10.038 0.5 17.58 ? C2' FMN 1001 A 1 HETATM 41 O O2' FMN . A . B 2 3.833 2.039 10.362 0.5 15.12 ? O2' FMN 1001 A 1 HETATM 42 O O2' FMN . C . B 2 3.578 1.734 10.116 0.5 17.59 ? O2' FMN 1001 A 1 HETATM 43 C C3' FMN . A . B 2 5.396 2.846 8.666 0.5 15.45 ? C3' FMN 1001 A 1 HETATM 44 C C3' FMN . C . B 2 5.231 2.698 8.597 0.5 17.77 ? C3' FMN 1001 A 1 HETATM 45 O O3' FMN . A . B 2 5.1 1.786 7.747 0.5 15.47 ? O3' FMN 1001 A 1 HETATM 46 O O3' FMN . C . B 2 5.22 1.514 7.787 0.5 17.45 ? O3' FMN 1001 A 1 HETATM 47 C C4' FMN . A . B 2 6.834 3.293 8.394 0.5 15.6 ? C4' FMN 1001 A 1 HETATM 48 C C4' FMN . C . B 2 6.619 3.34 8.471 0.5 17.97 ? C4' FMN 1001 A 1 HETATM 49 O O4' FMN . A . B 2 7.166 4.407 9.233 0.5 15.26 ? O4' FMN 1001 A 1 HETATM 50 O O4' FMN . C . B 2 6.699 4.535 9.263 0.5 17.91 ? O4' FMN 1001 A 1 HETATM 51 C C5' FMN . A . B 2 7.073 3.652 6.924 0.5 15.98 ? C5' FMN 1001 A 1 HETATM 52 C C5' FMN . C . B 2 6.997 3.653 7.019 0.5 18.23 ? C5' FMN 1001 A 1 HETATM 53 O O5' FMN . A . B 2 6.003 4.417 6.37 0.5 16.27 ? O5' FMN 1001 A 1 HETATM 54 O O5' FMN . C . B 2 5.981 4.378 6.324 0.5 18.3 ? O5' FMN 1001 A 1 HETATM 55 P P FMN . A . B 2 5.927 6.025 6.459 0.5 17.18 ? P FMN 1001 A 1 HETATM 56 P P FMN . C . B 2 5.906 5.989 6.281 0.5 19.08 ? P FMN 1001 A 1 HETATM 57 O O1P FMN . A . B 2 7.204 6.525 5.82 0.5 16.89 ? O1P FMN 1001 A 1 HETATM 58 O O1P FMN . C . B 2 7.1 6.436 5.466 0.5 18.78 ? O1P FMN 1001 A 1 HETATM 59 O O2P FMN . A . B 2 4.665 6.336 5.689 0.5 17.21 ? O2P FMN 1001 A 1 HETATM 60 O O2P FMN . C . B 2 4.568 6.24 5.629 0.5 19.04 ? O2P FMN 1001 A 1 HETATM 61 O O3P FMN . A . B 2 5.8 6.318 7.936 0.5 16.72 ? O3P FMN 1001 A 1 HETATM 62 O O3P FMN . C . B 2 5.938 6.404 7.734 0.5 18.64 ? O3P FMN 1001 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 62 #